vOTU vOTU-010277

vOTU: vOTU-010277

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-010277
Number of genomes	7
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00079 → vGENUS-00223 → vSUBGEN-19825 → vOTU-010277
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1532066
Biosample ID	SAMEA3665291
Genome length (bp)	39,720 bps
CheckV completeness	97.48% (High-quality)
CDS count	60
CDS density	89.31%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	304	Host agreement	92.43
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	4	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 97.48)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1532066_1	K14059	163.5	0	int; integrase	N/A
PHROG	UHGV-1532066_1	phrog_1	157.6	0	integrase	integration and excision
UniRef90	UHGV-1532066_1	UniRef90_A0A1Y4T0F9	353.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1532066_1	748224.HMPREF9436_03382	273.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1532066_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1532066_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1532066_1	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1532066_2	1280664.AUIX01000005_gene2823	53.1	0.0000056	N/A	N/A
PHROG	UHGV-1532066_4	phrog_8	51.7	0.000000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-1532066_4	UniRef90_UPI001C009F10	83.6	7.55e-20	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1532066_4	665950.HMPREF1025_02561	60.1	0.0000000000196	sequence-specific DNA binding	N/A
Pfam	UHGV-1532066_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1532066_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1532066_4	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1532066_5	UniRef90_A0A367GIH6	105.0	1.25e-27	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1532066_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1532066_5	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1532066_5	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1532066_6	596152.DesU5LDRAFT_1910	83.6	4.21e-17	N/A	N/A
structural_annotation	UHGV-1532066_6	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-1532066_8	phrog_7964	221.0	0	N/A	unknown function
UniRef90	UHGV-1532066_8	UniRef90_A0A174CB23	110.0	2.58e-25	Predicted acyltransferase	N/A
eggNOG-mapper	UHGV-1532066_8	665950.HMPREF1025_02555	107.0	3.04e-25	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-1532066_8	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-1532066_8	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-1532066_8	NF040481,COG2171	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1532066_11	1041142.ATTP01000043_gene5324	59.3	0.000000108	N/A	N/A
PHROG	UHGV-1532066_12	phrog_72	46.8	0.00000000000026	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1532066_12	UniRef90_UPI000C7BF263	106.0	6.1e-26	recombination protein NinB	N/A
eggNOG-mapper	UHGV-1532066_12	445972.ANACOL_01825	123.0	3.14e-33	N/A	N/A
structural_annotation	UHGV-1532066_12	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1532066_13	phrog_7566	59.8	3.9e-17	N/A	unknown function
eggNOG-mapper	UHGV-1532066_13	693746.OBV_24070	71.6	0.0000000000000117	N/A	N/A
KOfam	UHGV-1532066_14	K03111	140.5	1.79997e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1532066_14	phrog_44	144.9	4.69435e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1532066_14	UniRef90_UPI00187432A3	179.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1532066_14	411471.SUBVAR_04646	173.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1532066_14	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1532066_14	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1532066_14	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1532066_14	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1532066_14	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
Pfam	UHGV-1532066_15	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1532066_15	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-1532066_16	phrog_186	51.2	0.00000000000002	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1532066_16	447909.A6M985_9VIRU	53.9	0.00000884	calcium ion binding	N/A
Pfam	UHGV-1532066_16	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-1532066_16	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1532066_16	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-1532066_16	PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-1532066_17	phrog_9804	41.3	0.00000000002	N/A	unknown function
Pfam	UHGV-1532066_17	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1532066_17	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1532066_21	phrog_9958	121.2	6e-36	N/A	unknown function
UniRef90	UHGV-1532066_21	UniRef90_UPI001D08A241	164.0	0	N/A	N/A
eggNOG-mapper	UHGV-1532066_21	1160721.RBI_I01591	136.0	6.03e-38	N/A	N/A
structural_annotation	UHGV-1532066_21	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1532066_23	phrog_111	151.9	2.8026e-45	DNA methyltransferase	other
UniRef90	UHGV-1532066_23	UniRef90_A0A1Q6T6T6	268.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-1532066_23	445972.ANACOL_03344	211.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-1532066_23	oMTase_00015	167.9	0	orphan methyltransferase	RM
Pfam	UHGV-1532066_23	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-1532066_23	PF05869,TIGR01712,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-1532066_25	phrog_11237	82.8	4.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-1532066_25	610130.Closa_0738	99.4	5.04e-25	N/A	N/A
structural_annotation	UHGV-1532066_25	NF009167	N/A	N/A	N/A	N/A
KOfam	UHGV-1532066_26	K00571	119.3	4.6e-35	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1532066_26	phrog_498	457.5	0	DNA methyltransferase	other
UniRef90	UHGV-1532066_26	UniRef90_A0A101WI32	489.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1532066_26	226185.EF_2114	441.0	0	DNA methylase	N/A
PADLOC	UHGV-1532066_26	MTase_II_00015	375.6	0	Type II methyltransferase	RM
Pfam	UHGV-1532066_26	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1532066_26	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1532066_26	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1532066_26	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-1532066_28	K06909	395.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1532066_28	phrog_3717	157.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1532066_28	UniRef90_UPI001C3B9235	629.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1532066_28	411471.SUBVAR_06507	575.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1532066_28	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1532066_28	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1532066_28	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1532066_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1532066_28	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1532066_29	phrog_64	174.5	0	portal protein	head and packaging
UniRef90	UHGV-1532066_29	UniRef90_UPI0018A8A301	609.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1532066_29	673376.F2VHW1_9CAUD	214.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1532066_29	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1532066_29	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1532066_30	phrog_2468	108.5	2.5e-33	head morphogenesis	head and packaging
UniRef90	UHGV-1532066_30	UniRef90_A0A810PSD3	454.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1532066_30	1504822.CCNO01000013_gene286	188.0	0	cell adhesion	N/A
Pfam	UHGV-1532066_30	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1532066_30	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1532066_30	PF06152,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1532066_31	phrog_5	80.0	4.5e-23	tail completion or Neck1 protein	connector
UniRef90	UHGV-1532066_31	UniRef90_A0A3A9EIF3	188.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1532066_31	1280685.AUKC01000004_gene1630	110.0	2.6e-29	N/A	N/A
Pfam	UHGV-1532066_31	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1532066_31	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1532066_31	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1532066_32	phrog_478	128.3	3.2e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1532066_32	UniRef90_A0A373Q857	168.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1532066_32	1111121.HMPREF1247_0834	97.8	2.11e-24	N/A	N/A
UniRef90	UHGV-1532066_33	UniRef90_A0A6B9SU02	119.0	3.01e-30	Fibronectin autolysin	N/A
structural_annotation	UHGV-1532066_33	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1532066_34	phrog_544	119.7	2.7e-35	major head protein	head and packaging
UniRef90	UHGV-1532066_34	UniRef90_A0A1C6B5R0	334.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1532066_34	476272.RUMHYD_01776	315.0	0	N/A	N/A
structural_annotation	UHGV-1532066_34	PF06673,PF13629,MF_04119,TIGR04387,NF005261,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1532066_36	phrog_17977	83.0	2.5e-24	N/A	unknown function
UniRef90	UHGV-1532066_36	UniRef90_A0A285PT57	90.9	2.93e-21	Phage head-tail joining protein	N/A
structural_annotation	UHGV-1532066_36	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1532066_37	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1532066_38	phrog_885	72.4	5.3e-21	major tail protein	tail
UniRef90	UHGV-1532066_38	UniRef90_A0A843J9F0	184.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1532066_38	1504822.CCNO01000012_gene492	214.0	0	N/A	N/A
structural_annotation	UHGV-1532066_38	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1532066_39	phrog_18646	50.3	0.000000000000038	N/A	unknown function
PHROG	UHGV-1532066_41	phrog_20920	99.3	2.7e-29	N/A	unknown function
eggNOG-mapper	UHGV-1532066_41	1121335.Clst_0399	97.4	1.42e-24	N/A	N/A
structural_annotation	UHGV-1532066_41	PF16674	N/A	N/A	N/A	N/A
PHROG	UHGV-1532066_42	phrog_6900	229.6	0	tail length tape measure protein	tail
UniRef90	UHGV-1532066_42	UniRef90_A0A0D0SGC8	324.0	0	Phage minor tail protein	N/A
eggNOG-mapper	UHGV-1532066_42	1437608.BBIA_2554	296.0	0	phage tail tape measure protein	N/A
COG	UHGV-1532066_42	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1532066_42	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1532066_43	phrog_33	51.4	0.000000000000024	distal tail protein Dit	tail
UniRef90	UHGV-1532066_43	UniRef90_UPI001C0FCFFA	263.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1532066_43	1033737.CAEV01000029_gene285	94.4	9.84e-20	Phage tail protein	N/A
COG	UHGV-1532066_43	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1532066_43	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1532066_44	phrog_538	110.4	1.6e-32	minor tail protein	tail
UniRef90	UHGV-1532066_44	UniRef90_UPI001C113FEF	225.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-1532066_44	665956.HMPREF1032_02940	97.4	5.59e-20	N/A	N/A
Pfam	UHGV-1532066_44	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1532066_44	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1532066_45	phrog_9534	126.9	1.8e-37	head protein	head and packaging
eggNOG-mapper	UHGV-1532066_45	864178.E2ELJ8_9CAUD	94.7	8.2e-19	cell adhesion	N/A
structural_annotation	UHGV-1532066_45	PF18463,PF20747	N/A	N/A	N/A	N/A
KOfam	UHGV-1532066_48	K02395	83.7	4.1e-24	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-1532066_48	phrog_7698	161.7	0	endolysin	lysis
UniRef90	UHGV-1532066_48	UniRef90_A0A1C5V282	238.0	0	Exo-glucosaminidase lytG	N/A
eggNOG-mapper	UHGV-1532066_48	877414.ATWA01000019_gene2055	236.0	0	Cpl-7 lysozyme C-terminal domain protein	N/A
Pfam	UHGV-1532066_48	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1532066_48	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
COG	UHGV-1532066_48	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1532066_48	PF01510,PF18342,MF_04111,NF008758,COG3023,COG4991	N/A	N/A	N/A	N/A
UniRef90	UHGV-1532066_49	UniRef90_UPI00102F4BEE	50.8	0.00000614	CTP synthase	N/A
eggNOG-mapper	UHGV-1532066_49	1042156.CXIVA_01580	62.0	0.0000000000949	N/A	N/A
PHROG	UHGV-1532066_50	phrog_13256	51.5	0.000000000000012	N/A	unknown function
eggNOG-mapper	UHGV-1532066_50	1226322.HMPREF1545_00166	53.9	0.0000000106	N/A	N/A
KOfam	UHGV-1532066_51	K07684	42.2	0.000000000014	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	N/A
Pfam	UHGV-1532066_51	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-1532066_51	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
PHROG	UHGV-1532066_52	phrog_3754	92.2	5.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-1532066_52	476272.RUMHYD_01764	145.0	1.49939e-43	N/A	N/A
PHROG	UHGV-1532066_53	phrog_21718	119.9	1.6e-35	N/A	unknown function
eggNOG-mapper	UHGV-1532066_53	397290.C810_05210	102.0	3.36e-25	N/A	N/A
PHROG	UHGV-1532066_54	phrog_22984	73.0	1.4e-22	N/A	unknown function
PHROG	UHGV-1532066_55	phrog_16490	176.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1532066_55	1408437.JNJN01000043_gene803	109.0	2.98e-26	N/A	N/A
PHROG	UHGV-1532066_56	phrog_20016	198.1	0	N/A	unknown function
UniRef90	UHGV-1532066_56	UniRef90_A0A285PT46	201.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1532066_56	1226322.HMPREF1545_00077	178.0	0	N/A	N/A
structural_annotation	UHGV-1532066_56	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1532066_57	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1532066_58	1226322.HMPREF1545_00079	66.6	0.00000000000128	N/A	N/A
UniRef90	UHGV-1532066_60	UniRef90_A0A1T4XQT6	446.0	0	TraX protein	N/A
eggNOG-mapper	UHGV-1532066_60	622312.ROSEINA2194_03263	234.0	0	N/A	N/A
Pfam	UHGV-1532066_60	PF05857	N/A	N/A	TraX protein	TraX
structural_annotation	UHGV-1532066_60	PF05857,MF_01949,NF010454	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1532066	Yes	39,720	52	97	1
UHGV-1556396	No	39,348	52	97	1
UHGV-1542664	No	38,445	52	94	1
UHGV-1426155	No	34,126	52	84	1
UHGV-1530394	No	33,260	52	82	1
UHGV-1764718	No	15,213	53	37	1
UHGV-1665971	No	11,149	51	27	1