vOTU vOTU-010304

vOTU: vOTU-010304

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-010304
Number of genomes	6
Taxonomy (ICTV)	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Clostridium_AQ → Clostridium_AQ innocuum
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00799 → vGENUS-02360 → vSUBGEN-22230 → vOTU-010304
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Clostridium_AQ → Clostridium_AQ innocuum
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0146358
Biosample ID	SAMN05578585
Genome length (bp)	37,675 bps
CheckV completeness	92.27% (High-quality)
CDS count	58
CDS density	93.10%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Clostridium_AQ → Clostridium_AQ innocuum	Total connections	84	Host agreement	98.81
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Clostridium_AQ → Clostridium_AQ innocuum	Total connections	49	Host agreement	95.92

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 92.27)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0146358_1	K14059	204.7	0	int; integrase	N/A
PHROG	UHGV-0146358_1	phrog_1	188.8	0	integrase	integration and excision
UniRef90	UHGV-0146358_1	UniRef90_UPI001C37EA58	583.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0146358_1	908340.HMPREF9406_2610	273.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0146358_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0146358_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
Pfam	UHGV-0146358_1	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
COG	UHGV-0146358_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0146358_1	PF00589,PF13102,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0146358_2	1499683.CCFF01000014_gene3659	82.0	2.51e-16	N/A	N/A
KOfam	UHGV-0146358_4	K18830	59.2	9.6e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0146358_4	phrog_8	42.0	0.000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0146358_4	UniRef90_G1VRW4	239.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0146358_4	999413.HMPREF1094_02044	174.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0146358_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0146358_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0146358_4	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0146358_6	K07741	218.4	0	antB; anti-repressor protein	N/A
PHROG	UHGV-0146358_6	phrog_63	167.1	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0146358_6	UniRef90_UPI000E49576D	416.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0146358_6	1123263.AUKY01000076_gene1778	318.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0146358_6	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0146358_6	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0146358_6	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0146358_6	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-0146358_10	phrog_2113	56.4	4.5e-16	N/A	unknown function
UniRef90	UHGV-0146358_10	UniRef90_A0A847CHZ4	71.2	0.0000000000000708	HTH domain-containing protein	N/A
eggNOG-mapper	UHGV-0146358_10	1160721.RBI_I00213	59.7	0.00000000033	N/A	N/A
PHROG	UHGV-0146358_14	phrog_2760	187.9	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0146358_14	UniRef90_A0A3A6DAQ7	551.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0146358_14	86416.Clopa_4307	191.0	0	Phage recombination protein Bet	N/A
Pfam	UHGV-0146358_14	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0146358_14	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0146358_14	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0146358_14	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0146358_15	phrog_6244	68.9	8.9e-20	N/A	unknown function
eggNOG-mapper	UHGV-0146358_15	508419.F8J183_9CAUD	59.3	0.00000000109	N/A	N/A
structural_annotation	UHGV-0146358_16	PF16454,NF007974	N/A	N/A	N/A	N/A
PHROG	UHGV-0146358_17	phrog_190	130.7	9.6e-39	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0146358_17	UniRef90_UPI000E4EB16B	223.0	0	N/A	N/A
eggNOG-mapper	UHGV-0146358_17	445974.CLORAM_02947	134.0	3.98e-39	N/A	N/A
Pfam	UHGV-0146358_17	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0146358_17	PF06356,MF_04160,NF033179	N/A	N/A	N/A	N/A
PHROG	UHGV-0146358_19	phrog_2514	143.7	1.3999e-42	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0146358_19	UniRef90_UPI0004660BB2	129.0	3.03e-32	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0146358_19	411470.RUMGNA_02197	143.0	1.53e-38	phage replisome	N/A
structural_annotation	UHGV-0146358_19	PF10771,MF_01177,TIGR01714,COG0640	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0146358_20	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0146358_22	UniRef90_R6VZG6	106.0	3.51e-29	DNA methylase	N/A
KOfam	UHGV-0146358_23	K00571	120.2	2.4e-35	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0146358_23	phrog_67	94.8	1.8e-29	DNA methyltransferase	other
UniRef90	UHGV-0146358_23	UniRef90_G1VS51	509.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0146358_23	1123315.AUIP01000014_gene1936	354.0	0	DNA modification methylase DNA replication, recombination, and repair	N/A
PADLOC	UHGV-0146358_23	MTase_II_00157	94.3	5.7e-29	Type II methyltransferase	RM
Pfam	UHGV-0146358_23	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0146358_23	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0146358_23	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0146358_25	phrog_954	203.0	0	DNA methyltransferase	other
UniRef90	UHGV-0146358_25	UniRef90_A0A099I3S3	346.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0146358_25	908340.HMPREF9406_3501	276.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0146358_25	MTase_II_00074	196.3	0	Type II methyltransferase	RM
Pfam	UHGV-0146358_25	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0146358_25	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0146358_25	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
PHROG	UHGV-0146358_26	phrog_98	91.1	8.7e-27	N/A	unknown function
UniRef90	UHGV-0146358_26	UniRef90_G1VS54	255.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0146358_26	1499683.CCFF01000017_gene2588	129.0	6.08e-37	YopX protein	N/A
Pfam	UHGV-0146358_26	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0146358_26	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0146358_26	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-0146358_27	K03111	155.8	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0146358_27	phrog_44	153.7	1.4013e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0146358_27	UniRef90_A0A099I4V0	248.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0146358_27	658659.HMPREF0983_02345	260.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0146358_27	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0146358_27	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0146358_27	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0146358_27	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0146358_27	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0146358_28	phrog_4400	108.4	5.4e-32	N/A	unknown function
eggNOG-mapper	UHGV-0146358_28	886882.PPSC2_p0514	73.9	0.00000000000216	N/A	N/A
dbAPIS	UHGV-0146358_28	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A
PHROG	UHGV-0146358_29	phrog_2776	60.3	7.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0146358_29	697329.Rumal_3412	186.0	0	N/A	N/A
structural_annotation	UHGV-0146358_29	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0146358_31	PF05263,MF_00245,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0146358_33	K03427	163.1	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0146358_33	phrog_6380	398.0	0	DNA methyltransferase	other
UniRef90	UHGV-0146358_33	UniRef90_G1VRZ3	1088.0	0	N6_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-0146358_33	1444306.JFZC01000034_gene2643	352.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-0146358_33	MTase_I_00005	124.3	1.9e-37	Type I methyltransferase	RM
Pfam	UHGV-0146358_33	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0146358_33	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0146358_33	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0146358_35	phrog_1233	89.8	3.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-0146358_35	1232449.BAHV02000018_gene1535	146.0	7.9874e-44	N/A	N/A
KOfam	UHGV-0146358_36	K07474	94.1	2.8e-27	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0146358_36	phrog_2606	304.9	0	terminase small subunit	head and packaging
UniRef90	UHGV-0146358_36	UniRef90_UPI001C392722	558.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0146358_36	428127.EUBDOL_01230	239.0	0	terminase (Small subunit)	N/A
Pfam	UHGV-0146358_36	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
Pfam	UHGV-0146358_36	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0146358_36	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0146358_36	PF03592,PF10668,NF040601,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0146358_37	K06909	88.1	1.4e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0146358_37	phrog_2	71.8	1.5e-20	terminase large subunit	head and packaging
UniRef90	UHGV-0146358_37	UniRef90_U5F7S3	865.0	0	PBSX family phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0146358_37	552396.HMPREF0863_01628	865.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0146358_37	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0146358_37	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0146358_38	phrog_533	294.7	0	portal protein	head and packaging
UniRef90	UHGV-0146358_38	UniRef90_A0A1C6JYD4	518.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0146358_38	552396.HMPREF0863_01629	929.0	0	N/A	N/A
structural_annotation	UHGV-0146358_38	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0146358_39	phrog_581	302.9	0	minor head protein	head and packaging
UniRef90	UHGV-0146358_39	UniRef90_A0A6B1RQY7	1086.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0146358_39	552396.HMPREF0863_01630	872.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0146358_39	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
structural_annotation	UHGV-0146358_39	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0146358_42	phrog_2303	161.8	0	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0146358_42	552396.HMPREF0863_01634	340.0	0	N/A	N/A
PHROG	UHGV-0146358_43	phrog_422	322.3	0	major head protein	head and packaging
UniRef90	UHGV-0146358_43	UniRef90_A0A3E2WBR9	434.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0146358_43	552396.HMPREF0863_01635	589.0	0	N/A	N/A
structural_annotation	UHGV-0146358_43	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0146358_44	phrog_1378	79.4	3.5e-23	N/A	unknown function
eggNOG-mapper	UHGV-0146358_44	552396.HMPREF0863_01636	127.0	8.7e-38	N/A	N/A
PHROG	UHGV-0146358_45	phrog_541	83.1	3e-24	head-tail adaptor	connector
eggNOG-mapper	UHGV-0146358_45	552396.HMPREF0863_01637	229.0	0	N/A	N/A
PHROG	UHGV-0146358_46	phrog_8710	128.4	2.5e-38	N/A	unknown function
eggNOG-mapper	UHGV-0146358_46	552396.HMPREF0863_01638	204.0	0	N/A	N/A
structural_annotation	UHGV-0146358_46	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0146358_47	phrog_556	62.8	5.6e-18	minor head protein	head and packaging
UniRef90	UHGV-0146358_47	UniRef90_UPI001C3956D2	283.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0146358_47	552396.HMPREF0863_01639	190.0	0	N/A	N/A
PHROG	UHGV-0146358_48	phrog_2595	102.8	2.6e-30	head-tail connector protein	connector
UniRef90	UHGV-0146358_48	UniRef90_UPI001D0A149F	201.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0146358_48	552396.HMPREF0863_01640	229.0	0	N/A	N/A
Pfam	UHGV-0146358_48	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0146358_48	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0146358_49	phrog_820	123.9	8.7e-37	major tail protein	tail
eggNOG-mapper	UHGV-0146358_49	552396.HMPREF0863_01641	204.0	0	domain, Protein	N/A
COG	UHGV-0146358_49	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0146358_49	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0146358_50	phrog_8300	120.0	8.6e-36	N/A	unknown function
eggNOG-mapper	UHGV-0146358_50	1232449.BAHV02000018_gene1519	102.0	1.57e-26	N/A	N/A
structural_annotation	UHGV-0146358_50	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0146358_51	phrog_8355	131.4	1.5e-39	N/A	unknown function
UniRef90	UHGV-0146358_51	UniRef90_A0A4R3TDU8	117.0	1.59e-32	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0146358_51	552396.HMPREF0863_01643	116.0	7.64e-33	N/A	N/A
Pfam	UHGV-0146358_51	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
PHROG	UHGV-0146358_52	phrog_37487	476.7	0	N/A	unknown function
UniRef90	UHGV-0146358_52	UniRef90_A0A4R3TDI6	763.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0146358_52	552396.HMPREF0863_01644	516.0	0	phage tail tape measure protein	N/A
COG	UHGV-0146358_52	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0146358_53	phrog_1194	62.4	7.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0146358_53	552396.HMPREF0863_01645	179.0	0	N/A	N/A
structural_annotation	UHGV-0146358_53	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0146358_54	phrog_2566	48.4	0.00000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0146358_54	1294142.CINTURNW_1040	55.8	0.00000000362	N/A	N/A
PHROG	UHGV-0146358_55	phrog_1401	47.3	0.00000000000033	N/A	unknown function
UniRef90	UHGV-0146358_55	UniRef90_A0A7C6P910	55.8	0.000000171	N/A	N/A
eggNOG-mapper	UHGV-0146358_55	1262449.CP6013_3212	57.0	0.0000000105	N/A	N/A
structural_annotation	UHGV-0146358_55	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0146358_56	phrog_16267	128.7	2.94273e-44	N/A	unknown function
UniRef90	UHGV-0146358_56	UniRef90_UPI0008EB4AF8	2033.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0146358_56	552396.HMPREF0863_01647	893.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0146358_56	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-0146358_56	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0146358_56	PF05113,PF03944,NF033848,NF033675,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0146358_58	phrog_4105	71.8	9.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0146358_58	1121105.ATXL01000027_gene760	64.3	0.0000000000108	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0146358	Yes	37,675	41	92	1
UHGV-1868031	No	39,761	41	97	1
UHGV-0062964	No	38,729	41	95	1
UHGV-1542503	No	38,729	41	95	1
UHGV-1817318	No	12,028	43	30	1
UHGV-0384893	No	10,717	44	26	1