vOTU vOTU-010368

vOTU: vOTU-010368

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-010368
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00408 → vGENUS-11941 → vSUBGEN-17588 → vOTU-010368
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Eubacterium_G → Eubacterium_G ventriosum
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2032976
Biosample ID	SAMEA2737699
Genome length (bp)	34,857 bps
CheckV completeness	98.42% (High-quality)
CDS count	48
CDS density	92.32%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Eubacterium_G → Eubacterium_G ventriosum	Total connections	55	Host agreement	98.18
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Eubacterium_G → Eubacterium_G ventriosum	Total connections	48	Host agreement	95.83

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.42)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2032976_1	K06400	279.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2032976_1	phrog_95	307.0	0	integrase	integration and excision
UniRef90	UHGV-2032976_1	UniRef90_A0A413S025	1037.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-2032976_1	697281.Mahau_2563	471.0	0	resolvase	N/A
Pfam	UHGV-2032976_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2032976_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-2032976_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-2032976_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2032976_1	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-2032976_2	phrog_27136	146.7	5.04467e-44	N/A	unknown function
UniRef90	UHGV-2032976_2	UniRef90_UPI001CED3949	233.0	0	zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-2032976_2	1411095.X5JB37_9CAUD	91.3	3.7e-19	Short C-terminal domain	N/A
PHROG	UHGV-2032976_3	phrog_87	86.4	2.5e-25	metallo-protease	other
UniRef90	UHGV-2032976_3	UniRef90_UPI001D0DE977	183.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-2032976_3	742765.HMPREF9457_02093	166.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-2032976_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-2032976_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-2032976_3	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-2032976_4	phrog_8	54.4	0.000000000000003	transcriptional regulator	transcription regulation
UniRef90	UHGV-2032976_4	UniRef90_A0A8G1WXC0	91.3	5.53e-21	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2032976_4	1235790.C805_00592	58.9	0.0000000108	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2032976_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2032976_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2032976_4	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-2032976_6	UniRef90_UPI00164C9F56	96.7	3.59e-25	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2032976_6	1347392.CCEZ01000005_gene1206	47.0	0.00000295	N/A	N/A
Pfam	UHGV-2032976_6	PF01466	N/A	N/A	Skp1 family, dimerisation domain	Skp1
structural_annotation	UHGV-2032976_6	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2032976_8	K10906	101.8	2.3e-38	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	N/A
PHROG	UHGV-2032976_8	phrog_412	260.6	0	exonuclease VIII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2032976_8	UniRef90_A0A1C6GFL6	282.0	0	Exodeoxyribonuclease 8	N/A
eggNOG-mapper	UHGV-2032976_8	1454004.AW11_02382	166.0	0	N/A	N/A
Pfam	UHGV-2032976_8	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-2032976_8	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-2032976_8	PF12684,MF_03030,TIGR01896,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-2032976_9	phrog_1499	273.4	0	N/A	unknown function
UniRef90	UHGV-2032976_9	UniRef90_A0A316M6R3	571.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-2032976_9	742733.HMPREF9469_01850	561.0	0	DNA recombination	N/A
Pfam	UHGV-2032976_9	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-2032976_9	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
structural_annotation	UHGV-2032976_9	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-2032976_10	phrog_3657	328.7	0	N/A	unknown function
eggNOG-mapper	UHGV-2032976_10	1121864.OMO_02139	211.0	0	N/A	N/A
KOfam	UHGV-2032976_11	K03111	119.2	5.8e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2032976_11	phrog_44	130.6	1.1e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2032976_11	UniRef90_A0A255IMH7	180.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2032976_11	411463.EUBVEN_00539	175.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-2032976_11	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2032976_11	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2032976_11	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2032976_11	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2032976_11	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2032976_12	phrog_3490	103.9	1.5e-30	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2032976_12	UniRef90_A0A2K3JBB6	159.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-2032976_12	1120998.AUFC01000030_gene2218	89.4	1.27e-20	N/A	N/A
Pfam	UHGV-2032976_12	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-2032976_12	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-2032976_13	K02316	73.4	3.2e-21	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-2032976_13	phrog_11992	140.2	1.40004e-41	N/A	unknown function
UniRef90	UHGV-2032976_13	UniRef90_UPI001D07B9F3	147.0	4.05956e-42	CHC2 zinc finger domain-containing protein	N/A
eggNOG-mapper	UHGV-2032976_13	411460.RUMTOR_02069	132.0	2.7e-37	CHC2 zinc finger	N/A
PADLOC	UHGV-2032976_13	drt-UG29	57.1	1.8e-16	DRT	DRT
Pfam	UHGV-2032976_13	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-2032976_13	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-2032976_13	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-2032976_14	phrog_8841	505.3	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2032976_14	UniRef90_A0A1H9YKF3	636.0	0	N/A	N/A
eggNOG-mapper	UHGV-2032976_14	357809.Cphy_2984	530.0	0	N/A	N/A
Pfam	UHGV-2032976_14	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-2032976_14	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-2032976_14	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2032976_14	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
PHROG	UHGV-2032976_17	phrog_17690	79.4	3.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-2032976_17	1235798.C817_03495	68.2	0.000000000000458	N/A	N/A
eggNOG-mapper	UHGV-2032976_19	665950.HMPREF1025_01377	157.0	0	N/A	N/A
eggNOG-mapper	UHGV-2032976_20	411461.DORFOR_01156	181.0	0	N/A	N/A
structural_annotation	UHGV-2032976_20	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
PHROG	UHGV-2032976_22	phrog_954	247.7	0	DNA methyltransferase	other
UniRef90	UHGV-2032976_22	UniRef90_A0A413RZZ9	318.0	0	Class I SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-2032976_22	1395513.P343_12775	245.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
PADLOC	UHGV-2032976_22	MTase_II_00074	230.1	0	Type II methyltransferase	RM
Pfam	UHGV-2032976_22	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-2032976_22	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-2032976_22	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
PHROG	UHGV-2032976_23	phrog_36	66.4	5.3e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-2032976_23	UniRef90_A0A7C6D6F2	87.0	3.2e-19	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-2032976_23	1111454.HMPREF1250_0009	70.9	0.000000000000108	N/A	N/A
structural_annotation	UHGV-2032976_23	PF07374,MF_00674,NF005248,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-2032976_24	K07474	92.9	7.3e-27	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-2032976_24	phrog_51	115.9	3.3e-34	terminase small subunit	head and packaging
UniRef90	UHGV-2032976_24	UniRef90_A0A413RCV1	336.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-2032976_24	1256908.HMPREF0373_00489	144.0	1.54998e-41	Terminase small subunit	N/A
Pfam	UHGV-2032976_24	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-2032976_24	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-2032976_24	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-2032976_25	K06909	86.9	2.7e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2032976_25	phrog_2	73.3	4.8e-21	terminase large subunit	head and packaging
UniRef90	UHGV-2032976_25	UniRef90_A0A413RCQ1	948.0	0	Terminase	N/A
eggNOG-mapper	UHGV-2032976_25	552396.HMPREF0863_01628	577.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2032976_25	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-2032976_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2032976_25	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2032976_26	phrog_533	290.7	0	portal protein	head and packaging
UniRef90	UHGV-2032976_26	UniRef90_A0A413RCQ7	1009.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2032976_26	33035.JPJF01000093_gene2257	569.0	0	N/A	N/A
Pfam	UHGV-2032976_26	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-2032976_26	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-2032976_27	phrog_25639	98.5	3.1e-29	N/A	unknown function
eggNOG-mapper	UHGV-2032976_27	483218.BACPEC_01160	76.6	1.17e-17	N/A	N/A
PHROG	UHGV-2032976_28	phrog_581	236.0	0	minor head protein	head and packaging
UniRef90	UHGV-2032976_28	UniRef90_A0A414EGE0	584.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-2032976_28	742740.HMPREF9474_03503	399.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-2032976_28	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2032976_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2032976_28	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-2032976_31	phrog_2303	159.7	0	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-2032976_31	483218.BACPEC_01156	141.0	3.29e-39	N/A	N/A
PHROG	UHGV-2032976_32	phrog_422	322.8	0	major head protein	head and packaging
UniRef90	UHGV-2032976_32	UniRef90_A0A413RCT9	590.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-2032976_32	552396.HMPREF0863_01635	394.0	0	N/A	N/A
structural_annotation	UHGV-2032976_32	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2032976_33	phrog_1378	74.0	1.2e-21	N/A	unknown function
PHROG	UHGV-2032976_34	phrog_541	68.3	1.1e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-2032976_34	742740.HMPREF9474_03507	144.0	5.49309e-43	N/A	N/A
PHROG	UHGV-2032976_35	phrog_8710	135.7	1.3e-40	N/A	unknown function
eggNOG-mapper	UHGV-2032976_35	1304866.K413DRAFT_0782	123.0	4.07e-35	N/A	N/A
structural_annotation	UHGV-2032976_35	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2032976_36	phrog_556	70.3	2.4e-20	minor head protein	head and packaging
eggNOG-mapper	UHGV-2032976_36	742740.HMPREF9474_03509	155.0	0	N/A	N/A
PHROG	UHGV-2032976_37	phrog_2595	99.8	1.8e-29	head-tail connector protein	connector
UniRef90	UHGV-2032976_37	UniRef90_UPI001D0627B3	151.0	1.12104e-44	minor capsid protein	N/A
eggNOG-mapper	UHGV-2032976_37	1282664.H354_06686	163.0	0	N/A	N/A
Pfam	UHGV-2032976_37	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-2032976_37	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-2032976_38	phrog_820	112.0	2.7e-33	major tail protein	tail
eggNOG-mapper	UHGV-2032976_38	33035.JPJF01000093_gene2246	207.0	0	N/A	N/A
structural_annotation	UHGV-2032976_38	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2032976_39	phrog_8300	87.8	9.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-2032976_39	33035.JPJF01000093_gene2245	87.8	2.35e-21	N/A	N/A
structural_annotation	UHGV-2032976_39	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2032976_40	phrog_8355	90.2	9.8e-27	N/A	unknown function
UniRef90	UHGV-2032976_40	UniRef90_UPI001D0684E3	79.7	1.72e-17	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-2032976_40	483218.BACPEC_01147	79.7	1.27e-18	Bacteriophage Gp15 protein	N/A
PHROG	UHGV-2032976_41	phrog_1535	320.8	0	tail length tape measure protein	tail
UniRef90	UHGV-2032976_41	UniRef90_A0A174WQ97	596.0	0	Phage-like protein	N/A
eggNOG-mapper	UHGV-2032976_41	33035.JPJF01000093_gene2243	593.0	0	phage tail tape measure protein	N/A
COG	UHGV-2032976_41	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-2032976_41	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-2032976_42	phrog_1194	66.5	3.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-2032976_42	397290.C810_05238	95.1	3.26e-23	N/A	N/A
Pfam	UHGV-2032976_42	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-2032976_42	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2032976_44	phrog_17180	60.6	2.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-2032976_44	457424.BFAG_02437	55.1	0.0000000621	N/A	N/A
Pfam	UHGV-2032976_45	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
Pfam	UHGV-2032976_46	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
NCBIFam	UHGV-2032976_46	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
COG	UHGV-2032976_46	COG4964	N/A	N/A	Flp pilus assembly protein, secretin CpaC	N/A
PHROG	UHGV-2032976_48	phrog_199	65.7	5.7e-19	holin	lysis
UniRef90	UHGV-2032976_48	UniRef90_A0A373VSF9	244.0	0	Holin	N/A
eggNOG-mapper	UHGV-2032976_48	411462.DORLON_00766	179.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-2032976_48	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-2032976_48	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-2032976_48	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-2032976_48	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2032976	Yes	34,857	36	98	1
UHGV-0117676	No	32,500	36	92	1
UHGV-0071604	No	32,153	36	91	1
UHGV-1874386	No	13,232	36	29	1