vOTU vOTU-010541

vOTU: vOTU-010541

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-010541
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00117 → vGENUS-00572 → vSUBGEN-24311 → vOTU-010541
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira
Host range breadth	Genus
Lifestyle	temperate (evidence: geNomad)

Representative genome
Genome ID	UHGV-0151219
Biosample ID	SAMN06111954
Genome length (bp)	35,372 bps
CheckV completeness	93.47% (High-quality)
CDS count	48
CDS density	92.17%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	626	Host agreement	99.04
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira sp000436475	Total connections	121	Host agreement	86.78

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 93.47)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0151219_1	K06400	360.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0151219_1	phrog_95	351.7	0	integrase	integration and excision
UniRef90	UHGV-0151219_1	UniRef90_A0A413YU13	816.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0151219_1	411462.DORLON_00823	442.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0151219_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0151219_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0151219_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0151219_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0151219_1	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0151219_2	K06218	80.6	4.5e-23	relE, stbE; mRNA interferase RelE/StbE	N/A
PHROG	UHGV-0151219_2	phrog_1213	76.3	3.9e-22	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0151219_2	UniRef90_R5AEV9	127.0	9.73e-37	Cytotoxic translational repressor of toxin-antitoxin stability system	N/A
eggNOG-mapper	UHGV-0151219_2	97139.C824_00468	116.0	4.32e-33	ParE toxin of type II toxin-antitoxin system, parDE	N/A
Pfam	UHGV-0151219_2	PF05016	N/A	N/A	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
COG	UHGV-0151219_2	COG2026	N/A	N/A	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	N/A
structural_annotation	UHGV-0151219_2	PF05016,TIGR00053,COG2026	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0151219_3	1235792.C808_02931	89.7	1.99e-22	N/A	N/A
PHROG	UHGV-0151219_4	phrog_1847	342.2	0	N/A	unknown function
UniRef90	UHGV-0151219_4	UniRef90_A0A174S171	673.0	0	Membrane-bound metallopeptidase	N/A
eggNOG-mapper	UHGV-0151219_4	483218.BACPEC_01182	588.0	0	T5orf172	N/A
Pfam	UHGV-0151219_4	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-0151219_4	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0151219_4	PF13250,NF041454	N/A	N/A	N/A	N/A
PHROG	UHGV-0151219_5	phrog_3845	68.7	1.2e-19	N/A	unknown function
UniRef90	UHGV-0151219_5	UniRef90_UPI0019563C69	85.9	3.85e-16	PH domain-containing protein	N/A
eggNOG-mapper	UHGV-0151219_5	768710.DesyoDRAFT_5205	112.0	4.32e-28	PFAM Tellurite resistance protein TerB	N/A
COG	UHGV-0151219_5	COG3793	N/A	N/A	Tellurite resistance protein TerB	N/A
PHROG	UHGV-0151219_6	phrog_20886	47.1	0.0000000000003	N/A	unknown function
UniRef90	UHGV-0151219_6	UniRef90_A0A660M5N1	55.8	0.0000000122	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0151219_6	476272.RUMHYD_02825	58.5	0.000000000767	N/A	N/A
structural_annotation	UHGV-0151219_6	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0151219_7	K22300	53.2	0.0000000000000069	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0151219_7	phrog_2967	53.2	0.0000000000000031	transcriptional regulator	transcription regulation
UniRef90	UHGV-0151219_7	UniRef90_A0A3D5LQZ9	253.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0151219_7	1262914.BN533_01956	68.2	0.000000000000726	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0151219_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0151219_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0151219_7	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0151219_8	K18830	51.2	0.000000000000028	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0151219_8	phrog_8	45.5	0.0000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-0151219_8	UniRef90_A0A356C4L0	117.0	1.7e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0151219_8	1161413.HMPREF1510_1296	49.7	0.00000304	Transcriptional regulator	N/A
Pfam	UHGV-0151219_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0151219_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0151219_8	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0151219_15	phrog_3584	160.0	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0151219_15	1235800.C819_02258	275.0	0	N/A	N/A
structural_annotation	UHGV-0151219_15	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0151219_16	K03469	83.5	3.6e-24	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0151219_16	phrog_531	82.0	7.6e-24	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0151219_16	UniRef90_A0A350VVB3	123.0	3.46e-33	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0151219_16	1519464.HY22_13875	87.0	1.33e-19	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0151219_16	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0151219_16	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0151219_16	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0151219_17	483218.BACPEC_01167	198.0	0	N/A	N/A
PHROG	UHGV-0151219_18	phrog_8470	283.0	0	N/A	unknown function
UniRef90	UHGV-0151219_18	UniRef90_UPI001D08730A	181.0	5.60519e-45	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0151219_18	483218.BACPEC_01166	369.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0151219_18	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0151219_18	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0151219_19	phrog_15077	105.4	1.3e-31	N/A	unknown function
UniRef90	UHGV-0151219_19	UniRef90_A0A174WLY0	191.0	0	N/A	N/A
eggNOG-mapper	UHGV-0151219_19	483218.BACPEC_01165	190.0	0	N/A	N/A
structural_annotation	UHGV-0151219_19	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0151219_20	phrog_355	71.5	1e-20	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0151219_20	UniRef90_A0A1C5VVJ6	73.6	0.0000000000000291	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0151219_20	1116375.VEJY3_09830	63.2	0.0000000000502	N/A	N/A
Pfam	UHGV-0151219_20	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0151219_20	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0151219_20	PF14359,TIGR03646,COG3613	N/A	N/A	N/A	N/A
UniRef90	UHGV-0151219_21	UniRef90_A0A417WAJ1	109.0	2.76e-29	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0151219_21	1235800.C819_02254	99.0	9.28e-26	HNH nucleases	N/A
PHROG	UHGV-0151219_22	phrog_36	47.6	0.0000000000003	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0151219_22	397290.C810_01391	142.0	1.49995e-41	N/A	N/A
structural_annotation	UHGV-0151219_22	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0151219_23	phrog_2538	90.7	1.4e-26	terminase small subunit	head and packaging
UniRef90	UHGV-0151219_23	UniRef90_A0A1C5UE81	145.0	2.05991e-42	HTH_Tnp_1_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0151219_23	1139219.I569_01387	62.8	0.0000000000598	Helix-turn-helix of insertion element transposase	N/A
Pfam	UHGV-0151219_23	PF13022	N/A	N/A	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
structural_annotation	UHGV-0151219_23	PF13022	N/A	N/A	N/A	N/A
KOfam	UHGV-0151219_24	K06909	95.9	5.4e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0151219_24	phrog_2	66.2	7.4e-19	terminase large subunit	head and packaging
UniRef90	UHGV-0151219_24	UniRef90_A0A413YU24	900.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0151219_24	1415775.U729_2599	524.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0151219_24	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0151219_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0151219_24	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0151219_25	phrog_533	276.5	0	portal protein	head and packaging
UniRef90	UHGV-0151219_25	UniRef90_A0A3D5LTG9	953.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0151219_25	33035.JPJF01000093_gene2257	573.0	0	N/A	N/A
structural_annotation	UHGV-0151219_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0151219_26	phrog_581	198.9	0	minor head protein	head and packaging
UniRef90	UHGV-0151219_26	UniRef90_A0A3D5LQU4	489.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0151219_26	33035.JPJF01000093_gene2255	379.0	0	N/A	N/A
Pfam	UHGV-0151219_26	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0151219_26	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0151219_26	PF06152	N/A	N/A	N/A	N/A
UniRef90	UHGV-0151219_27	UniRef90_UPI00066D3680	132.0	1.72e-34	minor capsid protein	N/A
eggNOG-mapper	UHGV-0151219_27	1194526.A284_07065	114.0	7.65e-28	head morphogenesis protein, SPP1 gp7 family	N/A
COG	UHGV-0151219_27	COG2369	N/A	N/A	N/A	N/A
UniRef90	UHGV-0151219_29	UniRef90_A0A3A9HXZ9	67.0	0.000000000000142	CopG family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0151219_29	1235800.C819_00492	65.9	0.0000000000000698	N/A	N/A
structural_annotation	UHGV-0151219_29	PF01402,NF041793,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0151219_30	phrog_373	187.7	0	anti-repressor	transcription regulation
UniRef90	UHGV-0151219_30	UniRef90_A0A3D5LSU5	411.0	0	Phage regulatory protein	N/A
eggNOG-mapper	UHGV-0151219_30	1499683.CCFF01000014_gene3944	199.0	0	ORF6C domain	N/A
Pfam	UHGV-0151219_30	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0151219_30	PF10552	N/A	N/A	ORF6C domain	ORF6C
NCBIFam	UHGV-0151219_30	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0151219_30	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0151219_30	PF10552,PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0151219_32	phrog_2303	143.4	1.60028e-42	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0151219_32	483218.BACPEC_01156	145.0	1.20999e-40	N/A	N/A
PHROG	UHGV-0151219_33	phrog_422	263.2	0	major head protein	head and packaging
UniRef90	UHGV-0151219_33	UniRef90_A0A3D5M0U8	505.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0151219_33	663278.Ethha_1589	377.0	0	N/A	N/A
structural_annotation	UHGV-0151219_33	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0151219_34	phrog_541	69.3	5.7e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0151219_34	483218.BACPEC_01153	146.0	1.02295e-43	N/A	N/A
PHROG	UHGV-0151219_35	phrog_8710	127.6	4.3e-38	N/A	unknown function
eggNOG-mapper	UHGV-0151219_35	742740.HMPREF9474_03508	122.0	1.4e-34	N/A	N/A
structural_annotation	UHGV-0151219_35	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0151219_36	phrog_556	60.3	2.8e-17	minor head protein	head and packaging
eggNOG-mapper	UHGV-0151219_36	742740.HMPREF9474_03509	138.0	2.9e-40	N/A	N/A
structural_annotation	UHGV-0151219_36	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0151219_37	phrog_2595	92.5	3.9e-27	head-tail connector protein	connector
UniRef90	UHGV-0151219_37	UniRef90_UPI001D068DAC	140.0	3.06e-40	minor capsid protein	N/A
eggNOG-mapper	UHGV-0151219_37	742740.HMPREF9474_03510	127.0	5.26e-36	N/A	N/A
Pfam	UHGV-0151219_37	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0151219_37	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0151219_38	phrog_820	108.4	4.5e-32	major tail protein	tail
UniRef90	UHGV-0151219_38	UniRef90_T3DDR1	186.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-0151219_38	1151292.QEW_2426	186.0	0	N/A	N/A
structural_annotation	UHGV-0151219_38	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0151219_39	phrog_8300	69.8	3.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0151219_39	1151292.QEW_2425	70.1	0.0000000000000419	N/A	N/A
structural_annotation	UHGV-0151219_39	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0151219_40	phrog_8355	100.9	4.4e-30	N/A	unknown function
UniRef90	UHGV-0151219_40	UniRef90_UPI0006BBA9AA	132.0	1e-37	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0151219_40	1415775.U729_2613	110.0	4.87e-30	N/A	N/A
Pfam	UHGV-0151219_40	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0151219_40	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0151219_41	phrog_1535	235.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0151219_41	UniRef90_A0A1C5RRP4	325.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0151219_41	742733.HMPREF9469_01814	302.0	0	tape measure	N/A
COG	UHGV-0151219_41	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0151219_41	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0151219_42	phrog_1194	77.9	1.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0151219_42	33035.JPJF01000093_gene2242	157.0	0	N/A	N/A
structural_annotation	UHGV-0151219_42	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0151219_43	phrog_1401	47.1	0.00000000000038	N/A	unknown function
structural_annotation	UHGV-0151219_43	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0151219_44	phrog_6616	154.1	1.4013e-45	tail protein	tail
UniRef90	UHGV-0151219_44	UniRef90_A0A8D9PGP3	528.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-0151219_44	1294142.CINTURNW_1706	266.0	0	Phage minor structural protein	N/A
COG	UHGV-0151219_44	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0151219_44	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
KOfam	UHGV-0151219_48	K04763	232.6	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0151219_48	phrog_1	181.3	0	integrase	integration and excision
UniRef90	UHGV-0151219_48	UniRef90_A0A6G5YKB8	287.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0151219_48	33035.JPJF01000058_gene3673	264.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0151219_48	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0151219_48	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0151219_48	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0151219_48	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0151219	Yes	35,372	36	93	1
UHGV-1554284	No	34,595	36	91	1
UHGV-0098997	No	20,890	36	55	1
UHGV-0298180	No	20,071	38	53	1