vOTU vOTU-010646

vOTU: vOTU-010646

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-010646
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00673 → vGENUS-00827 → vSUBGEN-02878 → vOTU-010646
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (Evidence: geNomad)

Representative genome
Genome ID	UHGV-0157077
Biosample ID	N/A
Genome length (bp)	26,403 bps
CheckV completeness	99.90% (High-quality)
CDS count	42
CDS density	95.07%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	801	Host agreement	88.51
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	90	Host agreement	96.67

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0157077_2	UniRef90_UPI001B3C704F	82.8	9.43e-20	helix-turn-helix domain-containing protein	N/A
COG	UHGV-0157077_2	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
KOfam	UHGV-0157077_3	K01447	59.9	6e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0157077_3	phrog_20388	308.6	0	endolysin	lysis
UniRef90	UHGV-0157077_3	UniRef90_A0A374N1L8	558.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0157077_3	1203606.HMPREF1526_00253	320.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0157077_3	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0157077_3	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0157077_3	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0157077_3	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0157077_4	phrog_443	64.8	2.4e-18	holin	lysis
UniRef90	UHGV-0157077_4	UniRef90_R6R2Q3	90.1	2.22e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0157077_4	1235797.C816_04172	81.6	8.66e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0157077_4	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0157077_4	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0157077_5	phrog_1863	71.0	1.4e-21	N/A	unknown function
UniRef90	UHGV-0157077_5	UniRef90_UPI001F223E8B	91.3	1.9e-22	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0157077_5	1203606.HMPREF1526_02027	82.4	9.85e-20	N/A	N/A
UniRef90	UHGV-0157077_7	UniRef90_A0A374N9Y2	322.0	0	N/A	N/A
Pfam	UHGV-0157077_7	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0157077_7	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
PHROG	UHGV-0157077_8	phrog_1067	135.5	4.2e-40	minor head protein	head and packaging
UniRef90	UHGV-0157077_8	UniRef90_A0A348ZBV6	178.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0157077_8	1160721.RBI_I01574	127.0	3.46e-29	Prophage endopeptidase tail	N/A
Pfam	UHGV-0157077_8	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0157077_8	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0157077_8	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0157077_8	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157077_9	UniRef90_A0A1G5CPA2	119.0	7.56e-29	Phage-related protein	N/A
eggNOG-mapper	UHGV-0157077_9	1246.JMEA01000006_gene51	73.9	0.00000000000071	phage tail	N/A
COG	UHGV-0157077_9	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0157077_9	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0157077_10	phrog_23464	261.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0157077_10	665950.HMPREF1025_02660	182.0	1.4013e-45	phage tail tape measure protein	N/A
COG	UHGV-0157077_10	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0157077_10	COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0157077_12	phrog_1021	43.7	0.00000000000022	N/A	unknown function
eggNOG-mapper	UHGV-0157077_12	1321778.HMPREF1982_03556	52.4	0.000000521	N/A	N/A
PHROG	UHGV-0157077_13	phrog_885	135.2	4.39999e-40	major tail protein	tail
UniRef90	UHGV-0157077_13	UniRef90_Q894J4	163.0	0	Conserved protein	N/A
eggNOG-mapper	UHGV-0157077_13	1321814.HMPREF9089_00935	175.0	0	N/A	N/A
structural_annotation	UHGV-0157077_13	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157077_14	PF12691	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157077_15	UniRef90_UPI001A9B6FBF	159.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0157077_15	642492.Clole_0747	135.0	4.35e-39	N/A	N/A
structural_annotation	UHGV-0157077_15	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0157077_16	phrog_1951	97.8	6.7e-29	head-tail adaptor	connector
UniRef90	UHGV-0157077_16	UniRef90_A0A373XMG4	218.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0157077_16	1536769.P40081_01090	66.6	0.000000000000798	head-tail adaptor	N/A
NCBIFam	UHGV-0157077_16	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0157077_16	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0157077_16	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0157077_17	phrog_5223	55.1	0.0000000000000011	neck protein	connector
UniRef90	UHGV-0157077_17	UniRef90_A0A174XIL0	94.7	2.44e-23	N/A	N/A
eggNOG-mapper	UHGV-0157077_17	411468.CLOSCI_00547	92.0	4.74e-23	N/A	N/A
PHROG	UHGV-0157077_18	phrog_10	125.8	5e-37	major head protein	head and packaging
UniRef90	UHGV-0157077_18	UniRef90_A0A373XLR3	723.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0157077_18	411468.CLOSCI_00548	372.0	0	Phage capsid family	N/A
Pfam	UHGV-0157077_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0157077_18	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0157077_18	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0157077_19	K01358	150.7	1.26117e-44	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0157077_19	phrog_94	239.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0157077_19	UniRef90_A0A373XPG0	463.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0157077_19	1396.DJ87_978	252.0	0	Clp protease	N/A
Pfam	UHGV-0157077_19	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0157077_19	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0157077_19	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0157077_20	phrog_12	176.3	0	portal protein	head and packaging
UniRef90	UHGV-0157077_20	UniRef90_A0A373XNZ6	777.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0157077_20	411468.CLOSCI_00550	404.0	0	Phage portal protein	N/A
Pfam	UHGV-0157077_20	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0157077_20	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0157077_20	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0157077_21	phrog_9	312.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0157077_21	UniRef90_A0A373XNY0	1055.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0157077_21	411468.CLOSCI_00551	682.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-0157077_21	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0157077_21	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0157077_21	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0157077_21	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0157077_22	phrog_1066	60.8	2.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0157077_22	931276.Cspa_c10130	67.4	0.00000000000134	N/A	N/A
PHROG	UHGV-0157077_23	phrog_119	72.0	9.2e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157077_23	UniRef90_A0A373XNZ9	219.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0157077_23	500633.CLOHIR_00362	119.0	1.01e-33	HNH endonuclease	N/A
Pfam	UHGV-0157077_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0157077_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0157077_24	394503.Ccel_3053	52.0	0.00000145	N/A	N/A
structural_annotation	UHGV-0157077_24	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0157077_25	phrog_3584	146.7	1.69557e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0157077_25	1235800.C819_00515	69.3	0.0000000000347	N/A	N/A
structural_annotation	UHGV-0157077_25	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0157077_28	phrog_15609	92.6	4.8e-27	N/A	unknown function
UniRef90	UHGV-0157077_28	UniRef90_A0A373SLQ6	157.0	3.45981e-42	N/A	N/A
eggNOG-mapper	UHGV-0157077_28	641112.ACOK01000073_gene2872	112.0	1.58e-26	N/A	N/A
structural_annotation	UHGV-0157077_28	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0157077_29	phrog_8470	210.4	0	N/A	unknown function
UniRef90	UHGV-0157077_29	UniRef90_UPI001C1DCAAD	125.0	3.79e-27	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0157077_29	1501230.ET33_02200	121.0	9.53e-27	PcfJ-like protein	N/A
Pfam	UHGV-0157077_29	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0157077_29	PF14284	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157077_32	UniRef90_A0A2N0ULT9	138.0	1.46996e-41	DNA binding domain, excisionase family	N/A
eggNOG-mapper	UHGV-0157077_32	1283300.ATXB01000001_gene1737	47.0	0.0000034	DNA excision	N/A
Pfam	UHGV-0157077_32	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0157077_32	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0157077_32	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0157077_32	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0157077_34	K15773	52.0	0.000000000000016	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-0157077_34	phrog_3	49.4	0.00000000000022	transcriptional repressor	transcription regulation
UniRef90	UHGV-0157077_34	UniRef90_A0A374N3U7	128.0	1.27e-37	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0157077_34	866536.Belba_0874	47.0	0.00000422	transcriptional regulator	N/A
Pfam	UHGV-0157077_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0157077_34	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0157077_34	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0157077_35	phrog_3773	52.3	0.00000000000001	N/A	unknown function
structural_annotation	UHGV-0157077_35	PF01423,MF_00257,NF041667	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157077_37	UniRef90_UPI001494A832	48.9	0.00000401	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0157077_37	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0157077_37	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157077_38	UniRef90_A0A373XLN2	267.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0157077_38	1235793.C809_00679	97.4	2.35e-24	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0157077_38	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0157077_38	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0157077_39	phrog_1914	144.2	8.09951e-43	N/A	unknown function
UniRef90	UHGV-0157077_39	UniRef90_A0A374NDM7	363.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0157077_39	1160721.RBI_I01604	164.0	0	N/A	N/A
Pfam	UHGV-0157077_39	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0157077_39	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0157077_39	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157077_40	UniRef90_A0A374DTF3	320.0	0	N/A	N/A
KOfam	UHGV-0157077_41	K14059	206.2	0	int; integrase	N/A
PHROG	UHGV-0157077_41	phrog_1	181.3	0	integrase	integration and excision
UniRef90	UHGV-0157077_41	UniRef90_A0A2N0ULT2	742.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0157077_41	428125.CLOLEP_02743	314.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0157077_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0157077_41	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0157077_41	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0157077_42	phrog_11900	83.0	2.7e-24	N/A	unknown function
UniRef90	UHGV-0157077_42	UniRef90_A0A2N0UW35	615.0	0	Fido domain-containing protein	N/A
eggNOG-mapper	UHGV-0157077_42	1235799.C818_03247	568.0	0	Fic/DOC family	N/A
Pfam	UHGV-0157077_42	PF02661	N/A	N/A	Fic/DOC family	Fic
COG	UHGV-0157077_42	COG3177	N/A	N/A	Fic family protein	N/A
structural_annotation	UHGV-0157077_42	PF02661,PF20586,TIGR02613,COG3177	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0157077	Yes	26,403	40	100	1
UHGV-0189770	No	26,931	40	100	1
UHGV-1410400	No	12,496	41	51	1