vOTU vOTU-010667

vOTU: vOTU-010667

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-010667
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00673 → vSUBGEN-23115 → vOTU-010667
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2022542
Biosample ID	SAMEA2737837
Genome length (bp)	36,980 bps
CheckV completeness	99.90% (High-quality)
CDS count	49
CDS density	92.96%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	1025	Host agreement	82.63
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	107	Host agreement	81.31

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2022542_1	phrog_24764	149.9	5.60519e-45	N/A	unknown function
UniRef90	UHGV-2022542_1	UniRef90_A0A3D4G435	207.0	0	TnpV protein	N/A
eggNOG-mapper	UHGV-2022542_1	1123263.AUKY01000091_gene638	169.0	0	Transposon-encoded protein TnpV	N/A
Pfam	UHGV-2022542_1	PF14198	N/A	N/A	Transposon-encoded protein TnpV	TnpV
structural_annotation	UHGV-2022542_1	PF14198	N/A	N/A	N/A	N/A
KOfam	UHGV-2022542_2	K14059	181.8	0	int; integrase	N/A
PHROG	UHGV-2022542_2	phrog_1	166.5	0	integrase	integration and excision
UniRef90	UHGV-2022542_2	UniRef90_UPI000E4C7350	385.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-2022542_2	1095750.HMPREF9970_1688	234.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-2022542_2	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-2022542_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2022542_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2022542_2	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-2022542_3	phrog_4980	125.3	0	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-2022542_3	658086.HMPREF0994_06731	96.7	8.4e-20	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-2022542_3	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-2022542_3	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-2022542_3	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-2022542_4	phrog_1847	358.0	0	N/A	unknown function
UniRef90	UHGV-2022542_4	UniRef90_U2Q2K4	527.0	0	T5orf172 domain-containing protein	N/A
eggNOG-mapper	UHGV-2022542_4	1256908.HMPREF0373_00641	527.0	0	T5orf172	N/A
Pfam	UHGV-2022542_4	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-2022542_4	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-2022542_4	PF13250,NF041454	N/A	N/A	N/A	N/A
PHROG	UHGV-2022542_5	phrog_1914	152.6	2.8026e-45	N/A	unknown function
UniRef90	UHGV-2022542_5	UniRef90_UPI000E543E50	289.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-2022542_5	1160721.RBI_I01604	168.0	0	N/A	N/A
Pfam	UHGV-2022542_5	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-2022542_5	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-2022542_5	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-2022542_6	UniRef90_A0A373XLN2	121.0	1.39e-32	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2022542_6	999413.HMPREF1094_00245	63.5	0.00000000039	Peptidase S24-like	N/A
COG	UHGV-2022542_6	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-2022542_6	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-2022542_7	UniRef90_A0A374DVN3	154.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-2022542_7	411902.CLOBOL_02554	60.1	0.0000000000454	N/A	N/A
structural_annotation	UHGV-2022542_8	PF13443,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2022542_9	COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-2022542_14	phrog_8470	241.2	0	N/A	unknown function
UniRef90	UHGV-2022542_14	UniRef90_A0A1M7BII1	158.0	3.88e-37	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-2022542_14	1235790.C805_00306	144.0	2.27e-33	PcfJ-like protein	N/A
Pfam	UHGV-2022542_14	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-2022542_14	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-2022542_15	phrog_15609	125.1	2e-38	N/A	unknown function
UniRef90	UHGV-2022542_15	UniRef90_A0A373SLQ6	109.0	7.81e-24	N/A	N/A
eggNOG-mapper	UHGV-2022542_15	1514668.JOOA01000001_gene225	64.3	0.0000000105	N/A	N/A
Pfam	UHGV-2022542_15	PF11300	N/A	N/A	N/A	DUF3102
structural_annotation	UHGV-2022542_15	PF11300,NF038070	N/A	N/A	N/A	N/A
KOfam	UHGV-2022542_16	K03427	168.6	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-2022542_16	phrog_6380	369.1	0	DNA methyltransferase	other
UniRef90	UHGV-2022542_16	UniRef90_UPI001B3C6DA9	663.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-2022542_16	1444306.JFZC01000034_gene2643	308.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-2022542_16	MTase_I_00010	98.9	5.3e-29	Type I methyltransferase	RM
Pfam	UHGV-2022542_16	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-2022542_16	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-2022542_16	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-2022542_18	phrog_24518	84.8	9.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-2022542_18	1519439.JPJG01000077_gene922	99.8	2.45e-23	N/A	N/A
PHROG	UHGV-2022542_19	phrog_824	146.1	9.94922e-44	N/A	unknown function
UniRef90	UHGV-2022542_19	UniRef90_A0A3D3D6C6	199.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-2022542_19	397288.C806_00096	152.0	1.4013e-45	VRR_NUC	N/A
Pfam	UHGV-2022542_19	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-2022542_19	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-2022542_21	phrog_3584	147.6	7.70714e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2022542_21	1235800.C819_00515	85.9	3.65e-17	N/A	N/A
structural_annotation	UHGV-2022542_21	PF21578,NF041486	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2022542_22	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-2022542_23	phrog_119	66.9	3.1e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2022542_23	UniRef90_A0A412ULY9	187.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2022542_23	1123315.AUIP01000014_gene1945	88.6	1.97e-21	HNH endonuclease	N/A
Pfam	UHGV-2022542_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2022542_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-2022542_24	phrog_5110	82.8	3.1e-24	terminase small subunit	head and packaging
UniRef90	UHGV-2022542_24	UniRef90_UPI00057D0A7C	113.0	1.2e-30	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-2022542_24	86416.Clopa_0336	106.0	1.56e-28	N/A	N/A
Pfam	UHGV-2022542_24	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-2022542_24	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-2022542_25	phrog_9	284.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-2022542_25	UniRef90_A0A412UM03	979.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-2022542_25	86416.Clopa_0337	618.0	0	Phage Terminase	N/A
Pfam	UHGV-2022542_25	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2022542_25	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2022542_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2022542_25	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2022542_26	phrog_12	100.9	1e-29	portal protein	head and packaging
UniRef90	UHGV-2022542_26	UniRef90_A0A412ULV9	569.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2022542_26	1415774.U728_1254	269.0	0	Phage portal protein	N/A
Pfam	UHGV-2022542_26	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-2022542_26	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2022542_26	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-2022542_27	K01358	145.6	4.49817e-43	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-2022542_27	phrog_94	212.9	0	head maturation protease	head and packaging
UniRef90	UHGV-2022542_27	UniRef90_A0A412ULU1	395.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-2022542_27	86416.Clopa_0340	174.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-2022542_27	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-2022542_27	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-2022542_27	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-2022542_28	phrog_10	114.1	1.5e-33	major head protein	head and packaging
UniRef90	UHGV-2022542_28	UniRef90_A0A412ULW9	570.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-2022542_28	1211817.CCAT010000053_gene2132	322.0	0	Phage capsid family	N/A
Pfam	UHGV-2022542_28	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2022542_28	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2022542_28	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2022542_28	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2022542_29	phrog_749	51.6	0.000000000000014	N/A	unknown function
UniRef90	UHGV-2022542_29	UniRef90_A0A1G5CMX8	104.0	3.52e-27	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-2022542_29	349161.Dred_2603	55.8	0.00000000907	N/A	N/A
PHROG	UHGV-2022542_30	phrog_19734	65.8	6e-19	N/A	unknown function
eggNOG-mapper	UHGV-2022542_30	86416.Clopa_0343	55.1	0.0000000375	N/A	N/A
structural_annotation	UHGV-2022542_30	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2022542_31	698758.AXY_02180	62.4	0.0000000000394	N/A	N/A
structural_annotation	UHGV-2022542_31	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-2022542_32	UniRef90_UPI000E5564A4	172.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2022542_32	610130.Closa_0747	66.6	0.00000000000344	COG NOG18351 non supervised orthologous group	N/A
structural_annotation	UHGV-2022542_32	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-2022542_33	phrog_88	62.9	4.8e-18	major tail protein	tail
UniRef90	UHGV-2022542_33	UniRef90_A0A1G5CNS8	171.0	0	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-2022542_33	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-2022542_33	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2022542_33	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2022542_34	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-2022542_36	K20282	49.6	0.000000000000013	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-2022542_36	phrog_5218	300.1	0	N/A	unknown function
UniRef90	UHGV-2022542_36	UniRef90_UPI000E474EFE	767.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-2022542_36	999413.HMPREF1094_02001	283.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-2022542_36	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-2022542_36	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-2022542_36	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-2022542_37	phrog_33	63.2	6.8e-18	distal tail protein Dit	tail
UniRef90	UHGV-2022542_37	UniRef90_UPI00073F69EF	74.3	0.00000000000301	phage tail family protein	N/A
eggNOG-mapper	UHGV-2022542_37	1582149.A0A0A8WHP7_9CAUD	58.2	0.00000033	Phage tail protein	N/A
structural_annotation	UHGV-2022542_37	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2022542_38	phrog_1067	123.3	2.3e-36	minor head protein	head and packaging
UniRef90	UHGV-2022542_38	UniRef90_A0A1G5CPD2	157.0	1.33e-40	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-2022542_38	562981.HMPREF0428_00970	80.9	0.000000000000148	Phage minor structural protein	N/A
Pfam	UHGV-2022542_38	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-2022542_38	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-2022542_38	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2022542_38	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2022542_39	PF10651,PF00541,NF040788	N/A	N/A	N/A	N/A
KOfam	UHGV-2022542_41	K07273	188.2	0	acm; lysozyme	N/A
PHROG	UHGV-2022542_41	phrog_291	161.3	0	endolysin	lysis
UniRef90	UHGV-2022542_41	UniRef90_R6NXV5	422.0	0	Glycoside Hydrolase Family 25-like lysozyme/endolysin	N/A
eggNOG-mapper	UHGV-2022542_41	1120933.ATUY01000002_gene158	162.0	7.00649e-45	lysozyme activity	N/A
Pfam	UHGV-2022542_41	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-2022542_41	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-2022542_41	PF01183,TIGR04303,COG3757,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-2022542_42	phrog_1863	40.7	0.0000000000072	N/A	unknown function
UniRef90	UHGV-2022542_42	UniRef90_UPI001E345E1F	61.6	0.000000000133	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-2022542_42	1226322.HMPREF1545_04027	63.5	0.00000000000343	N/A	N/A
PHROG	UHGV-2022542_43	phrog_443	57.1	5.2e-16	holin	lysis
UniRef90	UHGV-2022542_43	UniRef90_R6MWB0	103.0	1.5e-27	Conserved domain protein	N/A
eggNOG-mapper	UHGV-2022542_43	1298920.KI911353_gene2669	86.7	8.66e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-2022542_43	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-2022542_43	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-2022542_44	K06400	260.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2022542_44	phrog_95	264.1	0	integrase	integration and excision
UniRef90	UHGV-2022542_44	UniRef90_UPI001E5635E3	257.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-2022542_44	1157490.EL26_02935	197.0	0	Recombinase	N/A
Pfam	UHGV-2022542_44	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2022542_44	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-2022542_44	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2022542_44	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-2022542_45	phrog_18108	72.1	7.3e-21	N/A	unknown function
structural_annotation	UHGV-2022542_45	PF07443	N/A	N/A	N/A	N/A
UniRef90	UHGV-2022542_46	UniRef90_UPI00164C32DE	85.9	3.23e-21	CopG family transcriptional regulator	N/A
PHROG	UHGV-2022542_48	phrog_6660	63.9	1.8e-18	N/A	unknown function
UniRef90	UHGV-2022542_48	UniRef90_A0A374US74	718.0	0	CYTH domain-containing protein	N/A
eggNOG-mapper	UHGV-2022542_48	246199.CUS_4928	317.0	0	CYTH	N/A
Pfam	UHGV-2022542_48	PF13521	N/A	N/A	AAA domain	AAA_28
Pfam	UHGV-2022542_48	PF01928	N/A	N/A	CYTH domain	CYTH
COG	UHGV-2022542_48	COG2954	N/A	N/A	CYTH domain, found in class IV adenylate cyclase and various triphosphatases	N/A
UniRef90	UHGV-2022542_49	UniRef90_UPI0018998E94	536.0	0	InlB B-repeat-containing protein	N/A
eggNOG-mapper	UHGV-2022542_49	877414.ATWA01000064_gene1973	63.2	0.0000000328	Leucine-rich repeat (LRR) protein	N/A
NCBIFam	UHGV-2022542_49	TIGR01167.1	N/A	N/A	LPXTG cell wall anchor domain-containing protein	N/A
COG	UHGV-2022542_49	COG4964	N/A	N/A	Flp pilus assembly protein, secretin CpaC	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2022542	Yes	36,980	37	100	1
UHGV-0158397	No	35,704	37	100	1
UHGV-1449462	No	24,553	38	70	1
UHGV-1425299	No	24,240	38	69	1