vOTU vOTU-010908

vOTU: vOTU-010908

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-010908
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00373 → vGENUS-00237 → vSUBGEN-01192 → vOTU-010908
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → SFJ001
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0213228
Biosample ID	N/A
Genome length (bp)	44,101 bps
CheckV completeness	99.64% (High-quality)
CDS count	67
CDS density	92.39%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → SFJ001	Total connections	68	Host agreement	79.41
PHIST-predicted host lineage	Bacteria → Proteobacteria	Total connections	2	Host agreement	50

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.64)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0213228_1	K21523	47.6	0.000000000000079	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0213228_1	phrog_2	101.4	1.3e-29	terminase large subunit	head and packaging
UniRef90	UHGV-0213228_1	UniRef90_UPI001F401ABC	657.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0213228_1	316274.Haur_1384	147.0	2.93e-36	N/A	N/A
Pfam	UHGV-0213228_1	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0213228_1	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0213228_1	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-0213228_2	phrog_3287	177.0	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0213228_2	665956.HMPREF1032_03917	667.0	0	N/A	N/A
structural_annotation	UHGV-0213228_2	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-0213228_5	phrog_35275	62.6	3.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0213228_5	1226322.HMPREF1545_03846	71.6	0.0000000000153	N/A	N/A
PHROG	UHGV-0213228_6	phrog_24113	56.9	2.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0213228_6	1226322.HMPREF1545_03847	49.7	0.00000909	N/A	N/A
structural_annotation	UHGV-0213228_6	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0213228_7	phrog_371	138.8	2.50006e-41	major head protein	head and packaging
UniRef90	UHGV-0213228_7	UniRef90_A0A1Y4TDW7	477.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-0213228_7	1226322.HMPREF1545_03848	284.0	0	N/A	N/A
Pfam	UHGV-0213228_7	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0213228_7	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0213228_8	phrog_156	230.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0213228_8	693746.OBV_23930	460.0	0	N/A	N/A
structural_annotation	UHGV-0213228_8	PF12236,MF_04120,TIGR01542,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0213228_9	phrog_13046	47.1	0.00000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0213228_9	693746.OBV_23880	107.0	3.72e-26	N/A	N/A
structural_annotation	UHGV-0213228_9	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213228_10	665956.HMPREF1032_03918	112.0	2.68e-25	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
eggNOG-mapper	UHGV-0213228_11	411483.FAEPRAA2165_00757	154.0	2.34e-39	N/A	N/A
KOfam	UHGV-0213228_13	K07273	201.1	0	acm; lysozyme	N/A
PHROG	UHGV-0213228_13	phrog_291	153.2	2.8026e-45	endolysin	lysis
UniRef90	UHGV-0213228_13	UniRef90_UPI00164A97A0	203.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0213228_13	537013.CLOSTMETH_03464	159.0	1.90577e-43	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0213228_13	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0213228_13	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0213228_13	PF01183,PF05194,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213228_14	97138.C820_00248	62.4	0.00000000000891	N/A	N/A
PHROG	UHGV-0213228_15	phrog_1129	79.2	3.2e-23	holin	lysis
UniRef90	UHGV-0213228_15	UniRef90_A0A3R5ZDU6	135.0	6.15e-40	Holin	N/A
eggNOG-mapper	UHGV-0213228_15	1256908.HMPREF0373_00463	128.0	1.16e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0213228_15	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0213228_15	PF06946	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213228_16	PF07638,MF_00674,TIGR02954,COG1846	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213228_19	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213228_21	1408437.JNJN01000060_gene452	246.0	0	heme binding	N/A
COG	UHGV-0213228_21	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
UniRef90	UHGV-0213228_22	UniRef90_A0A4R1R5G7	77.0	6.51e-18	Anaerobic ribonucleoside-triphosphate reductase-like protein	N/A
eggNOG-mapper	UHGV-0213228_22	658088.HMPREF0987_00997	77.8	5.41e-19	Anaerobic ribonucleoside-triphosphate reductase	N/A
Pfam	UHGV-0213228_22	PF13597	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	NRDD
COG	UHGV-0213228_22	COG1328	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	N/A
KOfam	UHGV-0213228_23	K14059	97.5	2.1e-28	int; integrase	N/A
PHROG	UHGV-0213228_23	phrog_1	104.0	1.9e-30	integrase	integration and excision
UniRef90	UHGV-0213228_23	UniRef90_UPI001897E1C8	162.0	1.07059e-42	site-specific integrase	N/A
eggNOG-mapper	UHGV-0213228_23	1410633.JHWR01000028_gene773	103.0	8.77e-22	Phage integrase family	N/A
Pfam	UHGV-0213228_23	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0213228_23	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0213228_23	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
Pfam	UHGV-0213228_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0213228_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0213228_24	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213228_25	1195236.CTER_1717	57.4	0.0000000503	N/A	N/A
structural_annotation	UHGV-0213228_25	PF10358	N/A	N/A	N/A	N/A
COG	UHGV-0213228_27	COG4197	N/A	N/A	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	N/A
structural_annotation	UHGV-0213228_27	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0213228_28	phrog_8	46.4	0.00000000000088	transcriptional regulator	transcription regulation
UniRef90	UHGV-0213228_28	UniRef90_UPI001C009F10	112.0	3.1e-31	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0213228_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0213228_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0213228_28	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0213228_29	phrog_463	208.9	0	anti-repressor	transcription regulation
UniRef90	UHGV-0213228_29	UniRef90_UPI00137B411D	275.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0213228_29	411490.ANACAC_00813	223.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0213228_29	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0213228_29	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0213228_29	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0213228_29	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213228_30	PF10743,NF033787	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213228_31	596152.DesU5LDRAFT_1910	89.7	2.74e-19	N/A	N/A
structural_annotation	UHGV-0213228_31	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213228_32	PF11034	N/A	N/A	N/A	N/A
PHROG	UHGV-0213228_36	phrog_253	115.7	3.7e-34	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213228_36	UniRef90_E2ZNS5	167.0	0	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0213228_36	748224.HMPREF9436_03356	167.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-0213228_36	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0213228_36	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0213228_37	phrog_7838	139.9	2.09999e-41	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213228_37	UniRef90_A0A8D9UGW3	202.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0213228_37	742767.HMPREF9456_02397	163.0	0	N/A	N/A
structural_annotation	UHGV-0213228_37	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0213228_38	phrog_72	66.2	5.4e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213228_38	UniRef90_UPI000C7BF263	169.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0213228_38	445972.ANACOL_01825	134.0	7.41e-38	N/A	N/A
structural_annotation	UHGV-0213228_38	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0213228_39	phrog_7566	79.8	2.4e-23	N/A	unknown function
UniRef90	UHGV-0213228_39	UniRef90_A0A8D9UHC0	79.0	6.04e-17	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0213228_39	693746.OBV_25470	85.9	3.36e-20	N/A	N/A
KOfam	UHGV-0213228_40	K03111	108.2	1.3e-31	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0213228_40	phrog_44	118.3	7.2e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213228_40	UniRef90_A0A1I3NFR9	128.0	2.84e-35	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0213228_40	748224.HMPREF9436_03359	117.0	1.39e-31	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0213228_40	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0213228_40	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0213228_40	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0213228_40	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0213228_40	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0213228_41	phrog_270	118.3	8.2e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213228_41	UniRef90_A0A3A6E2X3	105.0	7.52e-24	N/A	N/A
eggNOG-mapper	UHGV-0213228_41	768710.DesyoDRAFT_5236	100.0	1.05e-22	DnaD domain protein	N/A
Pfam	UHGV-0213228_41	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0213228_41	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0213228_41	PF05584,MF_01819,TIGR01610,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0213228_42	K02314	227.9	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0213228_42	phrog_19	217.1	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213228_42	UniRef90_UPI001F1C052D	434.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0213228_42	1203606.HMPREF1526_01325	162.0	1.22053e-42	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0213228_42	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0213228_42	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0213228_42	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0213228_42	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0213228_43	K01160	42.1	0.000000000021	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0213228_43	phrog_1682	68.8	9.1e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213228_43	UniRef90_UPI0009406B47	98.2	4.75e-24	endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0213228_43	220668.lp_2433	94.0	3.68e-23	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0213228_43	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0213228_43	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0213228_44	K21919	105.9	4.1e-31	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-0213228_44	phrog_923	99.6	1.8e-29	N/A	unknown function
eggNOG-mapper	UHGV-0213228_44	1226322.HMPREF1545_00011	125.0	3.11e-33	Pentapeptide repeats (8 copies)	N/A
Pfam	UHGV-0213228_44	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
Pfam	UHGV-0213228_44	PF19062	N/A	N/A	N/A	DUF5758
COG	UHGV-0213228_44	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213228_44	PF19062,PF13599,NF000139	N/A	N/A	N/A	N/A
PHROG	UHGV-0213228_46	phrog_236	59.7	9.5e-17	nucleotide kinase	other
UniRef90	UHGV-0213228_46	UniRef90_UPI000D110E3A	73.2	9.48e-16	N/A	N/A
eggNOG-mapper	UHGV-0213228_46	1236504.HMPREF2132_11120	57.4	0.000000000254	N/A	N/A
Pfam	UHGV-0213228_46	PF11753	N/A	N/A	N/A	DUF3310
PHROG	UHGV-0213228_48	phrog_9298	312.3	0	radical SAM domain protein	other
UniRef90	UHGV-0213228_48	UniRef90_A0A6L5TFB3	540.0	0	Radical SAM protein	N/A
eggNOG-mapper	UHGV-0213228_48	1235798.C817_05514	323.0	0	N/A	N/A
COG	UHGV-0213228_48	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-0213228_48	MF_01864,NF010916,COG2516	N/A	N/A	N/A	N/A
PHROG	UHGV-0213228_52	phrog_6721	289.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0213228_52	411460.RUMTOR_01369	286.0	0	N/A	N/A
structural_annotation	UHGV-0213228_52	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0213228_53	phrog_599	44.4	0.0000000000035	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0213228_53	UniRef90_A0A845MWR1	60.8	0.0000000000616	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0213228_53	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0213228_53	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0213228_53	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0213228_53	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0213228_55	phrog_36	70.2	3.8e-20	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0213228_55	663278.Ethha_1825	50.8	0.00000421	N/A	N/A
Pfam	UHGV-0213228_55	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0213228_55	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0213228_55	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0213228_56	phrog_5070	136.8	7.69999e-41	N/A	unknown function
eggNOG-mapper	UHGV-0213228_56	929794.CALV01000014_gene27	84.0	7.96e-16	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	N/A
COG	UHGV-0213228_56	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0213228_56	MF_01691,NF040481	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213228_57	1235798.C817_04600	66.2	0.00000000000111	N/A	N/A
structural_annotation	UHGV-0213228_57	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-0213228_63	phrog_19458	295.0	0	primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213228_63	UniRef90_A0A1V5KAU2	233.0	0	DarA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0213228_63	657322.FPR_26770	333.0	0	N/A	N/A
COG	UHGV-0213228_63	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
Pfam	UHGV-0213228_66	PF08681	N/A	N/A	N/A	DUF1778
structural_annotation	UHGV-0213228_66	PF03869	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0213228	Yes	44,101	56	100	1
UHGV-0174210	No	43,983	56	99	1