vOTU vOTU-011030

vOTU: vOTU-011030

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-011030
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00062 → vSUBFAM-00170 → vGENUS-00088 → vSUBGEN-11306 → vOTU-011030
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0180230
Biosample ID	N/A
Genome length (bp)	46,427 bps
CheckV completeness	99.90% (High-quality)
CDS count	79
CDS density	87.96%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella	Total connections	292	Host agreement	97.6
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella porci	Total connections	47	Host agreement	85.11

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0180230_5	phrog_15198	48.5	0.000000000000086	N/A	unknown function
UniRef90	UHGV-0180230_5	UniRef90_A0A395WBY6	120.0	3.95e-32	N/A	N/A
Pfam	UHGV-0180230_5	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0180230_9	PF11061	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180230_13	UniRef90_A0A413UEX6	291.0	0	N/A	N/A
Pfam	UHGV-0180230_13	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0180230_13	PF07374,NF008895	N/A	N/A	N/A	N/A
PHROG	UHGV-0180230_14	phrog_478	105.9	2.5e-31	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0180230_14	UniRef90_A0A0J8Z1B9	178.0	0	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-0180230_14	272623.L62008	80.5	1.36e-17	N/A	N/A
PHROG	UHGV-0180230_15	phrog_2316	44.0	0.0000000000041	N/A	unknown function
UniRef90	UHGV-0180230_15	UniRef90_A0A3E4YBW5	123.0	8.57e-35	N/A	N/A
eggNOG-mapper	UHGV-0180230_15	1280676.AUJO01000024_gene3262	64.7	0.00000000000213	N/A	N/A
structural_annotation	UHGV-0180230_15	PF16475,MF_00436,NF033216	N/A	N/A	N/A	N/A
PHROG	UHGV-0180230_16	phrog_4525	66.7	4.4e-19	N/A	unknown function
PHROG	UHGV-0180230_24	phrog_119	58.8	9.7e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180230_24	UniRef90_A0A395WA48	261.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0180230_24	1211814.CAPG01000074_gene3460	66.6	0.00000000000135	HNH endonuclease	N/A
Pfam	UHGV-0180230_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0180230_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0180230_25	phrog_361	74.5	1.3e-21	terminase small subunit	head and packaging
UniRef90	UHGV-0180230_25	UniRef90_A0A1C6H6I9	80.1	6.43e-17	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0180230_25	1329516.JPST01000017_gene431	50.1	0.00000474	Phage terminase, small subunit	N/A
Pfam	UHGV-0180230_25	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0180230_25	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0180230_25	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0180230_26	phrog_9	310.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0180230_26	UniRef90_A0A395WD03	1123.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0180230_26	742740.HMPREF9474_04307	548.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-0180230_26	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0180230_26	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0180230_26	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0180230_26	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0180230_27	phrog_12	99.3	3e-29	portal protein	head and packaging
UniRef90	UHGV-0180230_27	UniRef90_A0A395W9X2	811.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0180230_27	1203606.HMPREF1526_01337	285.0	0	Portal protein	N/A
Pfam	UHGV-0180230_27	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0180230_27	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0180230_27	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0180230_28	K06904	89.2	6.7e-26	N/A	N/A
PHROG	UHGV-0180230_28	phrog_80	119.6	4.2e-35	head maturation protease	head and packaging
UniRef90	UHGV-0180230_28	UniRef90_A0A413UET6	343.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0180230_28	411470.RUMGNA_02064	174.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0180230_28	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0180230_28	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0180230_28	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0180230_28	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0180230_29	phrog_10	78.8	8.1e-23	major head protein	head and packaging
UniRef90	UHGV-0180230_29	UniRef90_A0A395WF70	807.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0180230_29	1536774.H70357_10630	166.0	4.90454e-44	Phage capsid family	N/A
Pfam	UHGV-0180230_29	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0180230_29	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0180230_29	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0180230_29	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0180230_30	phrog_5223	52.1	0.0000000000000097	neck protein	connector
UniRef90	UHGV-0180230_30	UniRef90_A0A374RXD1	83.6	5.4e-19	DNA-packaging protein	N/A
structural_annotation	UHGV-0180230_30	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0180230_31	phrog_1951	72.8	3.4e-21	head-tail adaptor	connector
UniRef90	UHGV-0180230_31	UniRef90_A0A395WC07	222.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0180230_31	1243664.CAVL020000054_gene3020	60.1	0.000000000276	head-tail adaptor	N/A
NCBIFam	UHGV-0180230_31	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0180230_31	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0180230_31	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180230_32	1145276.T479_19945	51.6	0.000000605	N/A	N/A
structural_annotation	UHGV-0180230_32	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180230_33	UniRef90_A0A374RUJ8	144.0	1.24001e-41	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0180230_33	86416.Clopa_0344	58.2	0.00000000637	N/A	N/A
structural_annotation	UHGV-0180230_33	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0180230_34	phrog_88	142.2	2.90069e-42	major tail protein	tail
UniRef90	UHGV-0180230_34	UniRef90_A0A395WA58	399.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0180230_34	1033744.CAEL01000029_gene1276	152.0	5.1848e-44	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0180230_34	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0180230_34	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0180230_35	phrog_709	45.2	0.0000000000014	N/A	unknown function
structural_annotation	UHGV-0180230_35	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0180230_36	K10402	45.2	0.00000000000023	KIF20; kinesin family member 20	N/A
PHROG	UHGV-0180230_36	phrog_13339	331.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0180230_36	UniRef90_A0A395WD11	1850.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0180230_36	1117379.BABA_17397	248.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0180230_36	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0180230_36	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0180230_36	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0180230_36	PF10145,TIGR01760,TIGR02971,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0180230_37	phrog_33	49.8	0.000000000000085	distal tail protein Dit	tail
UniRef90	UHGV-0180230_37	UniRef90_A0A1C6JHE5	62.4	0.0000000561	Phage-related protein	N/A
Pfam	UHGV-0180230_37	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0180230_37	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0180230_37	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0180230_37	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0180230_38	phrog_1067	48.1	5.3e-23	minor head protein	head and packaging
eggNOG-mapper	UHGV-0180230_38	1232446.BAIE02000002_gene836	60.8	0.000000744	Phage minor structural protein	N/A
Pfam	UHGV-0180230_38	PF14200	N/A	N/A	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
NCBIFam	UHGV-0180230_38	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0180230_38	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0180230_38	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180230_39	PF10651,COG5513	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180230_40	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180230_41	PF16407,TIGR02657,COG3794	N/A	N/A	N/A	N/A
KOfam	UHGV-0180230_42	K10804	53.2	0.0000000000000042	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
PHROG	UHGV-0180230_42	phrog_13015	128.9	3.8e-38	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0180230_42	1121090.KB894688_gene1798	112.0	3.12e-25	GDSL-like Lipase/Acylhydrolase family	N/A
Pfam	UHGV-0180230_42	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-0180230_42	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
structural_annotation	UHGV-0180230_42	PF10651,PF11476,NF007819,COG1621	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180230_47	UniRef90_A0A8F0WFQ8	69.7	0.000000000103	Outer capsid protein/viral fiber	N/A
eggNOG-mapper	UHGV-0180230_47	476272.RUMHYD_01770	114.0	8.99e-29	N/A	N/A
PHROG	UHGV-0180230_48	phrog_20016	60.6	2.1e-17	N/A	unknown function
UniRef90	UHGV-0180230_48	UniRef90_A0A395WF88	257.0	0	BclA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0180230_48	1226322.HMPREF1545_00077	58.2	0.00000000877	N/A	N/A
Pfam	UHGV-0180230_48	PF18573	N/A	N/A	BclA C-terminal domain	BclA_C
structural_annotation	UHGV-0180230_48	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0180230_50	phrog_443	52.1	0.000000000000018	holin	lysis
UniRef90	UHGV-0180230_50	UniRef90_A0A2U2ELA1	77.8	1.85e-17	Membrane protein	N/A
eggNOG-mapper	UHGV-0180230_50	476272.RUMHYD_01759	84.0	1.55e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0180230_50	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0180230_50	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0180230_52	K01447	61.4	1.9e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0180230_52	phrog_7698	153.5	2.8026e-45	endolysin	lysis
UniRef90	UHGV-0180230_52	UniRef90_UPI001D0AA402	504.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0180230_52	1125712.HMPREF1316_2631	145.0	2.91001e-40	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0180230_52	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0180230_52	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0180230_52	COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-0180230_53	K14059	195.0	0	int; integrase	N/A
PHROG	UHGV-0180230_53	phrog_1	177.8	0	integrase	integration and excision
UniRef90	UHGV-0180230_53	UniRef90_A0A395WBW7	744.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0180230_53	1235796.C815_00955	299.0	0	DNA integration	N/A
Pfam	UHGV-0180230_53	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0180230_53	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0180230_53	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0180230_56	K18830	65.2	1.4e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0180230_56	phrog_2967	50.1	0.000000000000052	transcriptional regulator	transcription regulation
UniRef90	UHGV-0180230_56	UniRef90_A0A413CSI3	263.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0180230_56	999413.HMPREF1094_02045	103.0	1.7e-26	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0180230_56	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0180230_56	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0180230_56	PF01381,NF041951,COG2944	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180230_58	UniRef90_UPI000E4DF961	79.7	1.24e-18	ribbon-helix-helix domain-containing protein	N/A
Pfam	UHGV-0180230_58	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0180230_58	PF01402,NF041793,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180230_61	UniRef90_UPI001D14AAA4	71.2	0.0000000000000388	N/A	N/A
KOfam	UHGV-0180230_64	K04763	137.8	1.3e-40	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0180230_64	phrog_1	117.8	1.2e-34	integrase	integration and excision
UniRef90	UHGV-0180230_64	UniRef90_A0A395W9T7	573.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0180230_64	908340.HMPREF9406_2589	228.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0180230_64	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0180230_64	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0180230_64	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0180230_66	phrog_428	146.1	2.90069e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180230_66	UniRef90_A0A395WBX6	483.0	0	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0180230_66	279808.SH2379	144.0	3.29e-39	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-0180230_66	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0180230_66	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0180230_66	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0180230_66	PF09524,PF08679,MF_01909,TIGR02220,NF040939,COG1675	N/A	N/A	N/A	N/A
KOfam	UHGV-0180230_67	K02315	120.6	1.9e-35	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0180230_67	phrog_50	107.1	1.9e-31	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180230_67	UniRef90_A0A395WER8	523.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-0180230_67	1232446.BAIE02000011_gene1611	130.0	9.59e-34	N/A	N/A
Pfam	UHGV-0180230_67	PF00308	N/A	N/A	Bacterial dnaA protein	Bac_DnaA
COG	UHGV-0180230_67	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0180230_67	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180230_68	UniRef90_R6T064	75.1	0.000000000000416	NUMOD4 domain-containing protein	N/A
structural_annotation	UHGV-0180230_68	PF13392,PF07453	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180230_71	PF13392,PF07453	N/A	N/A	N/A	N/A
PHROG	UHGV-0180230_72	phrog_173	106.7	2.5e-31	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180230_72	UniRef90_UPI001C25836D	217.0	0	dUTPase	N/A
eggNOG-mapper	UHGV-0180230_72	218284.CCDN010000001_gene545	69.7	0.00000000000119	dUTPase	N/A
Pfam	UHGV-0180230_72	PF08761	N/A	N/A	dUTPase	dUTPase_2
COG	UHGV-0180230_72	COG4508	N/A	N/A	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	N/A
structural_annotation	UHGV-0180230_72	PF08761,COG4508	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180230_74	PF19801	N/A	N/A	N/A	N/A
PHROG	UHGV-0180230_77	phrog_7711	126.6	9.8e-38	N/A	unknown function
UniRef90	UHGV-0180230_77	UniRef90_UPI001C38CAD2	313.0	0	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0180230_77	189425.PGRAT_24145	101.0	7.56e-25	N/A	N/A
Pfam	UHGV-0180230_77	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0180230	Yes	46,427	33	100	1
UHGV-0211881	No	45,340	33	100	1
UHGV-1552612	No	10,239	36	23	1