vOTU vOTU-011033

vOTU: vOTU-011033

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-011033
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00206 → vGENUS-05242 → vSUBGEN-11307 → vOTU-011033
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Faecousia
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0180396
Biosample ID	SAMN09781740
Genome length (bp)	44,700 bps
CheckV completeness	99.90% (High-quality)
CDS count	69
CDS density	89.84%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Faecousia	Total connections	61	Host agreement	91.8
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0180396_2	1158612.I580_01895	80.9	5.81e-17	N/A	N/A
PHROG	UHGV-0180396_5	phrog_3136	132.7	1.3e-39	N/A	unknown function
UniRef90	UHGV-0180396_5	UniRef90_UPI001A9A8D4F	125.0	2.78e-33	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0180396_5	693746.OBV_25380	53.9	0.00000248	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0180396_5	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0180396_5	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0180396_7	phrog_111	155.9	0	DNA methyltransferase	other
UniRef90	UHGV-0180396_7	UniRef90_A0A2V2F8D8	210.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0180396_7	445972.ANACOL_03344	201.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0180396_7	oMTase_00015	175.0	0	orphan methyltransferase	RM
Pfam	UHGV-0180396_7	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0180396_7	PF05869,TIGR01712,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-0180396_10	phrog_9804	153.1	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0180396_10	UniRef90_A0A3D1LDS2	176.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0180396_10	1121344.JHZO01000003_gene981	166.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0180396_10	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0180396_10	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0180396_11	phrog_15768	137.5	3.20057e-42	N/A	unknown function
UniRef90	UHGV-0180396_11	UniRef90_A0A4D7AS84	126.0	8.38e-33	N/A	N/A
eggNOG-mapper	UHGV-0180396_11	1123489.AUAN01000006_gene1691	84.0	4.29e-16	Protein conserved in bacteria	N/A
AcrCatalog	UHGV-0180396_11	cluster_38323	106.0	4.86e-30	NA	N/A
Pfam	UHGV-0180396_11	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0180396_11	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0180396_11	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0180396_12	phrog_4973	66.6	3.4e-19	N/A	unknown function
UniRef90	UHGV-0180396_12	UniRef90_A0A3D3Y0P8	95.5	2.72e-24	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0180396_12	1072685.IX83_07155	50.4	0.000000204	Helix-turn-helix domain	N/A
Pfam	UHGV-0180396_12	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0180396_12	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-0180396_13	K01160	55.7	0.0000000000000014	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0180396_13	phrog_140	135.7	2.2e-40	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180396_13	UniRef90_A0A7C6XX43	126.0	3.54e-34	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0180396_13	545697.HMPREF0216_02819	115.0	6.94e-31	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0180396_13	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0180396_13	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0180396_13	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0180396_14	K03111	134.7	1.1e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0180396_14	phrog_44	145.8	2.49431e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180396_14	UniRef90_A0A3D2HZK1	140.0	6.65e-40	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0180396_14	445972.ANACOL_00151	137.0	2.48e-39	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0180396_14	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0180396_14	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0180396_14	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0180396_14	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0180396_14	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0180396_15	K07455	296.9	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0180396_15	phrog_148	280.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180396_15	UniRef90_U2SBP2	379.0	0	Recombination and repair protein RecT	N/A
eggNOG-mapper	UHGV-0180396_15	1226322.HMPREF1545_00015	379.0	0	RecT family	N/A
Pfam	UHGV-0180396_15	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0180396_15	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0180396_15	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0180396_15	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0180396_16	phrog_434	301.0	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180396_16	UniRef90_UPI001D078B74	278.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0180396_16	1121344.JHZO01000003_gene985	278.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0180396_16	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0180396_16	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0180396_16	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0180396_16	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180396_20	PF08962,PF07653,COG2388	N/A	N/A	N/A	N/A
PHROG	UHGV-0180396_22	phrog_8	42.2	0.000000000019	transcriptional regulator	transcription regulation
Pfam	UHGV-0180396_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0180396_22	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0180396_23	phrog_8	45.4	0.0000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-0180396_23	UniRef90_UPI000B35D4B7	70.1	0.000000000000271	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0180396_23	1160721.RBI_I00363	52.8	0.0000012	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0180396_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0180396_23	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0180396_25	K06400	364.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0180396_25	phrog_95	356.6	0	integrase	integration and excision
UniRef90	UHGV-0180396_25	UniRef90_UPI00164E9A6A	492.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0180396_25	663278.Ethha_0939	331.0	0	N/A	N/A
Pfam	UHGV-0180396_25	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0180396_25	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0180396_25	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0180396_25	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0180396_25	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180396_29	PF01047,MF_00620,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0180396_30	phrog_10091	105.9	3.1e-31	holin	lysis
UniRef90	UHGV-0180396_30	UniRef90_A0A1Y4RHF4	128.0	4.02e-37	Phage holin	N/A
eggNOG-mapper	UHGV-0180396_30	97139.C824_05950	117.0	1.18e-33	Bacteriophage holin	N/A
Pfam	UHGV-0180396_30	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0180396_30	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0180396_30	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180396_30	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0180396_31	phrog_355	58.4	1.3e-16	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180396_31	UniRef90_A0A416ZL61	145.0	2.31214e-43	N/A	N/A
eggNOG-mapper	UHGV-0180396_31	1256908.HMPREF0373_00479	116.0	1.2e-32	N/A	N/A
structural_annotation	UHGV-0180396_31	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0180396_32	phrog_4105	110.0	9.3e-33	N/A	unknown function
UniRef90	UHGV-0180396_32	UniRef90_A0A8D9UHA9	114.0	6.87e-31	Holin protein	N/A
eggNOG-mapper	UHGV-0180396_32	742733.HMPREF9469_05011	113.0	5.41e-31	N/A	N/A
KOfam	UHGV-0180396_33	K08640	85.1	1.4e-24	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0180396_33	phrog_2649	56.3	2.5e-19	endolysin	lysis
UniRef90	UHGV-0180396_33	UniRef90_R5EEL2	159.0	2.8026e-45	Putative muramoyl-pentapeptide carboxypeptidase	N/A
eggNOG-mapper	UHGV-0180396_33	931626.Awo_c26840	106.0	9.99e-26	Peptidase M15	N/A
Pfam	UHGV-0180396_33	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-0180396_33	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0180396_33	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180396_33	PF05951,PF01471,TIGR02869,COG3108	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180396_34	304371.MCP_2545	61.6	0.000000809	Repeats in polycystic kidney disease 1 (PKD1) and other proteins	N/A
PHROG	UHGV-0180396_37	phrog_6616	90.0	9.2e-27	tail protein	tail
eggNOG-mapper	UHGV-0180396_37	1507.HMPREF0262_00217	70.5	0.000000000316	N/A	N/A
PHROG	UHGV-0180396_38	phrog_1194	41.9	0.000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0180396_38	1507.HMPREF0262_01188	57.8	0.00000000469	N/A	N/A
structural_annotation	UHGV-0180396_38	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0180396_39	phrog_1535	121.0	1.1e-37	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0180396_39	1121866.AUGK01000003_gene1437	280.0	0	phage tail tape measure protein	N/A
COG	UHGV-0180396_39	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
eggNOG-mapper	UHGV-0180396_40	469596.HMPREF9488_01312	63.9	0.0000000000118	N/A	N/A
UniRef90	UHGV-0180396_41	UniRef90_A0A496N7D3	103.0	1.65e-26	N/A	N/A
eggNOG-mapper	UHGV-0180396_41	1123263.AUKY01000015_gene1618	79.0	1.38e-17	N/A	N/A
Pfam	UHGV-0180396_41	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0180396_41	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0180396_42	phrog_158	49.0	0.0000000000001	major tail protein	tail
UniRef90	UHGV-0180396_42	UniRef90_A0A1C6L0H9	199.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0180396_42	1232453.BAIF02000058_gene1634	90.9	1.36e-21	N/A	N/A
structural_annotation	UHGV-0180396_42	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180396_43	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180396_44	UniRef90_UPI001BBD4500	56.6	0.000000565	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0180396_44	476272.RUMHYD_01963	79.7	2.22e-16	N/A	N/A
eggNOG-mapper	UHGV-0180396_45	1121866.AUGK01000003_gene1432	71.6	0.000000000000031	N/A	N/A
UniRef90	UHGV-0180396_46	UniRef90_UPI00164E20D5	146.0	1.42932e-43	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0180396_46	1298920.KI911353_gene2658	50.4	0.00000135	N/A	N/A
Pfam	UHGV-0180396_46	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0180396_46	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0180396_47	phrog_1328	117.9	7.1e-35	major head protein	head and packaging
UniRef90	UHGV-0180396_47	UniRef90_UPI00164DD2D5	549.0	0	N/A	N/A
eggNOG-mapper	UHGV-0180396_47	665956.HMPREF1032_03619	225.0	0	N/A	N/A
Pfam	UHGV-0180396_47	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0180396_47	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0180396_49	phrog_478	130.2	8.8e-39	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0180396_49	UniRef90_A0A373Q857	168.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0180396_49	324057.Pjdr2_1537	98.2	1.32e-24	N/A	N/A
PHROG	UHGV-0180396_50	phrog_64	201.0	0	portal protein	head and packaging
UniRef90	UHGV-0180396_50	UniRef90_UPI001C02F349	676.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0180396_50	1123263.AUKY01000015_gene1609	407.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0180396_50	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0180396_50	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0180396_52	K07741	127.6	2.4e-37	antB; anti-repressor protein	N/A
PHROG	UHGV-0180396_52	phrog_130	287.7	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0180396_52	UniRef90_D9SWH3	314.0	0	Prophage antirepressor	N/A
eggNOG-mapper	UHGV-0180396_52	573061.Clocel_3580	314.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0180396_52	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0180396_52	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0180396_52	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0180396_52	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180396_53	UniRef90_A0A845R620	87.8	1.08e-21	CopG family transcriptional regulator	N/A
structural_annotation	UHGV-0180396_53	PF01402,NF041793,COG4453	N/A	N/A	N/A	N/A
PHROG	UHGV-0180396_54	phrog_38	183.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0180396_54	UniRef90_A0A810QA10	647.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0180396_54	1298920.KI911353_gene2682	463.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0180396_54	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0180396_54	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180396_54	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180396_58	742738.HMPREF9460_00886	72.0	0.000000000000335	N/A	N/A
structural_annotation	UHGV-0180396_58	TIGR03826	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180396_59	PF19818,TIGR03931	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180396_60	UniRef90_A0A7C6Y3R2	62.8	0.0000000000348	Helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0180396_60	PF20075,TIGR03070	N/A	N/A	N/A	N/A
PHROG	UHGV-0180396_69	phrog_606	52.4	0.0000000000000057	terminase small subunit	head and packaging
UniRef90	UHGV-0180396_69	UniRef90_UPI001C012D23	172.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0180396_69	931276.Cspa_c57180	67.8	0.00000000000643	DNA-packaging protein gp3	N/A
Pfam	UHGV-0180396_69	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0180396_69	PF16677	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0180396	Yes	44,700	50	100	1
UHGV-0193169	No	40,452	50	91	1