vOTU vOTU-011183

vOTU: vOTU-011183

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-011183
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium prausnitzii
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00124 → vGENUS-01155 → vSUBGEN-34419 → vOTU-011183
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0186402
Biosample ID	SAMN09781723
Genome length (bp)	41,024 bps
CheckV completeness	99.90% (High-quality)
CDS count	63
CDS density	92.05%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	302	Host agreement	99.67
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium prausnitzii	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0186402_1	PF14582,MF_00905,NF008359,COG2129	N/A	N/A	N/A	N/A
KOfam	UHGV-0186402_2	K07273	156.0	0	acm; lysozyme	N/A
PHROG	UHGV-0186402_2	phrog_291	109.1	4.7e-32	endolysin	lysis
UniRef90	UHGV-0186402_2	UniRef90_A0A564U0D3	398.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0186402_2	718252.FP2_04890	234.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0186402_2	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0186402_2	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0186402_2	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0186402_4	phrog_15303	79.5	3.6e-23	N/A	unknown function
COG	UHGV-0186402_7	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0186402_7	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-0186402_11	phrog_16490	44.0	0.0000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0186402_11	641112.ACOK01000103_gene525	73.9	0.000000000000225	N/A	N/A
structural_annotation	UHGV-0186402_12	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0186402_13	1378168.N510_03079	84.0	3.1e-17	N/A	N/A
KOfam	UHGV-0186402_14	K14059	194.2	0	int; integrase	N/A
PHROG	UHGV-0186402_14	phrog_1	189.5	0	integrase	integration and excision
UniRef90	UHGV-0186402_14	UniRef90_A0A367GI93	266.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0186402_14	1507.HMPREF0262_00307	187.0	0	Phage integrase family	N/A
Pfam	UHGV-0186402_14	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-0186402_14	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0186402_14	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0186402_14	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0186402_15	K07729	45.4	0.0000000000013	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0186402_15	phrog_1373	46.6	0.00000000000025	transcriptional regulator	transcription regulation
UniRef90	UHGV-0186402_15	UniRef90_A0A2A7B6N3	218.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0186402_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0186402_15	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0186402_15	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0186402_19	phrog_192	52.3	0.0000000000000076	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0186402_19	UniRef90_S1R1M7	79.7	0.0000000000000243	Exonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0186402_19	1121864.OMO_01137	79.7	0.00000000000000407	Exonuclease	N/A
COG	UHGV-0186402_19	COG0847	N/A	N/A	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	N/A
structural_annotation	UHGV-0186402_20	PF06776,COG5342	N/A	N/A	N/A	N/A
UniRef90	UHGV-0186402_22	UniRef90_A0A2A7AM72	110.0	1.8e-29	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0186402_22	1378168.N510_01712	73.9	0.000000000000016	N/A	N/A
structural_annotation	UHGV-0186402_22	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0186402_30	phrog_997	121.2	5.4e-36	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0186402_30	UniRef90_R6MCS9	99.0	2.27e-24	N/A	N/A
eggNOG-mapper	UHGV-0186402_30	1203606.HMPREF1526_01889	121.0	4.65e-34	replication terminator protein, phage associated	N/A
PHROG	UHGV-0186402_31	phrog_1029	147.4	7.00649e-44	N/A	unknown function
eggNOG-mapper	UHGV-0186402_31	552398.HMPREF0866_01625	113.0	1.21e-27	N/A	N/A
structural_annotation	UHGV-0186402_31	PF10065,COG5532	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0186402_32	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0186402_33	phrog_72	50.1	0.000000000000047	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0186402_33	411471.SUBVAR_05829	146.0	3.02961e-42	N/A	N/A
structural_annotation	UHGV-0186402_33	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0186402_34	phrog_7566	83.0	2.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-0186402_34	411471.SUBVAR_05830	105.0	2.96e-28	N/A	N/A
KOfam	UHGV-0186402_35	K03111	141.6	7.90052e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0186402_35	phrog_44	140.9	7.79963e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0186402_35	UniRef90_A0A2A7B6R5	243.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0186402_35	748224.HMPREF9436_00638	200.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0186402_35	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0186402_35	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0186402_35	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0186402_35	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0186402_35	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0186402_36	phrog_6969	43.2	0.000000000004	N/A	unknown function
eggNOG-mapper	UHGV-0186402_36	748224.HMPREF9436_00735	131.0	2.46e-33	N/A	N/A
Pfam	UHGV-0186402_36	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-0186402_36	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0186402_36	PF19481,PF01978,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0186402_38	K03496	214.9	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0186402_38	phrog_164	148.9	3.36312e-44	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0186402_38	UniRef90_A0A2A7B6H3	307.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0186402_38	411471.SUBVAR_05839	227.0	0	AAA domain	N/A
Pfam	UHGV-0186402_38	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0186402_38	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0186402_38	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
Pfam	UHGV-0186402_39	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0186402_39	PF04448	N/A	N/A	N/A	N/A
KOfam	UHGV-0186402_40	K03497	93.1	5.2e-27	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0186402_40	phrog_4715	116.6	2.2e-34	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0186402_40	UniRef90_A0A2A7B6Q0	261.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0186402_40	411471.SUBVAR_05842	162.0	1.46015e-42	ParB-like nuclease domain	N/A
Pfam	UHGV-0186402_40	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0186402_40	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0186402_40	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0186402_41	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-0186402_44	K07319	46.6	0.00000000000047	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0186402_44	phrog_6025	50.0	0.000000000000048	DNA methyltransferase	other
UniRef90	UHGV-0186402_44	UniRef90_A0A139SMF1	50.8	0.000000231	Site-specific DNA-methyltransferase (cytosine-N(4)-specific)	N/A
eggNOG-mapper	UHGV-0186402_44	1070319.CAGGBEG34_210101	52.0	0.000000213	Belongs to the N(4) N(6)-methyltransferase family	N/A
COG	UHGV-0186402_44	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
KOfam	UHGV-0186402_45	K07319	118.4	8e-35	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0186402_45	phrog_67	104.8	9.8e-31	DNA methyltransferase	other
UniRef90	UHGV-0186402_45	UniRef90_A0A3A9DTT0	295.0	0	Methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-0186402_45	1235794.C811_01507	103.0	1.53e-25	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0186402_45	MTase_II_00157	98.3	1.5e-28	Type II methyltransferase	RM
Pfam	UHGV-0186402_45	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0186402_45	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
PHROG	UHGV-0186402_46	phrog_119	60.6	2.5e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0186402_46	UniRef90_A0A2A7AM49	205.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0186402_46	349161.Dred_2609	90.5	4.89e-22	HNH nucleases	N/A
Pfam	UHGV-0186402_46	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0186402_46	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0186402_47	phrog_13845	61.2	1.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0186402_47	1399942.U3PDR2_9CAUD	72.0	0.0000000000000127	N/A	N/A
Pfam	UHGV-0186402_47	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0186402_47	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0186402_48	phrog_9	235.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0186402_48	UniRef90_A0A2A7ALT4	1029.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0186402_48	610130.Closa_0741	624.0	0	Phage Terminase	N/A
Pfam	UHGV-0186402_48	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0186402_48	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0186402_48	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0186402_49	phrog_12	133.2	1.6e-39	portal protein	head and packaging
UniRef90	UHGV-0186402_49	UniRef90_A0A2A7B6S8	553.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0186402_49	349161.Dred_2606	287.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0186402_49	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0186402_49	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0186402_49	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0186402_49	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0186402_50	K01358	84.7	1.4e-24	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0186402_50	phrog_94	133.7	2.1e-39	head maturation protease	head and packaging
UniRef90	UHGV-0186402_50	UniRef90_UPI001C10F40E	154.0	2.94973e-42	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0186402_50	1232452.BAIB02000007_gene1626	148.0	2.25006e-41	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0186402_50	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0186402_50	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0186402_50	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0186402_51	phrog_10	135.8	2e-40	major head protein	head and packaging
UniRef90	UHGV-0186402_51	UniRef90_A0A2A7B712	763.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0186402_51	1235792.C808_00086	454.0	0	Phage capsid family	N/A
Pfam	UHGV-0186402_51	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0186402_51	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0186402_51	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0186402_51	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0186402_51	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0186402_52	phrog_749	54.3	0.0000000000000021	N/A	unknown function
eggNOG-mapper	UHGV-0186402_52	1235792.C808_00087	80.5	2.61e-18	N/A	N/A
PHROG	UHGV-0186402_53	phrog_19734	101.0	9.4e-30	N/A	unknown function
UniRef90	UHGV-0186402_53	UniRef90_A0A6I7GNS7	121.0	1.08e-32	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0186402_53	349161.Dred_2602	75.1	0.00000000000000129	N/A	N/A
structural_annotation	UHGV-0186402_53	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0186402_54	999413.HMPREF1094_02005	72.4	0.00000000000000441	N/A	N/A
structural_annotation	UHGV-0186402_54	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0186402_55	phrog_5	51.7	0.000000000000019	tail completion or Neck1 protein	connector
UniRef90	UHGV-0186402_55	UniRef90_A0A1C6FG30	130.0	2.94e-35	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0186402_55	908340.HMPREF9406_2573	120.0	3.47e-32	N/A	N/A
Pfam	UHGV-0186402_55	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0186402_55	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0186402_55	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0186402_56	phrog_88	89.8	3.2e-26	major tail protein	tail
UniRef90	UHGV-0186402_56	UniRef90_A0A7U9IBX1	135.0	1.21e-36	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0186402_56	33035.JPJF01000039_gene278	82.4	1.01e-16	N/A	N/A
NCBIFam	UHGV-0186402_56	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0186402_56	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0186402_58	phrog_9959	84.5	6.6e-25	tail length tape measure protein	tail
UniRef90	UHGV-0186402_58	UniRef90_A0A2A7ALS3	808.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0186402_58	1111131.HMPREF1255_1479	171.0	7.97997e-41	phage tail tape measure protein	N/A
Pfam	UHGV-0186402_58	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0186402_58	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0186402_58	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0186402_58	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0186402_59	phrog_33	89.6	6.1e-26	distal tail protein Dit	tail
UniRef90	UHGV-0186402_59	UniRef90_A0A1C6H6D2	131.0	3.81e-34	Phage-related protein	N/A
eggNOG-mapper	UHGV-0186402_59	439292.Bsel_2995	108.0	3.65e-26	tail component	N/A
COG	UHGV-0186402_59	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0186402_59	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0186402_60	phrog_1067	195.0	0	minor head protein	head and packaging
UniRef90	UHGV-0186402_60	UniRef90_A0A2A7AM44	495.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0186402_60	1123263.AUKY01000068_gene489	214.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0186402_60	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0186402_60	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0186402_60	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0186402_60	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0186402_62	phrog_7158	48.8	1.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-0186402_62	411901.BACCAC_01116	72.8	0.000000000222	Calcineurin-like phosphoesterase	N/A
Pfam	UHGV-0186402_62	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0186402	Yes	41,024	54	100	1
UHGV-0211528	No	39,380	55	98	1