vOTU vOTU-011214

vOTU: vOTU-011214

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-011214
Number of genomes	7
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00251 → vSUBFAM-03611 → vGENUS-10578 → vSUBGEN-14029 → vOTU-011214
Host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Eggerthellaceae → Senegalimassilia
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0190480
Biosample ID	N/A
Genome length (bp)	58,725 bps
CheckV completeness	99.18% (High-quality)
CDS count	68
CDS density	87.92%
tRNA count	4
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Eggerthellaceae → Senegalimassilia	Total connections	6	Host agreement	83.33
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.18)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0190480_11	K03698	242.9	0	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
UniRef90	UHGV-0190480_11	UniRef90_A0A7X9AE53	274.0	0	HD domain-containing protein	N/A
eggNOG-mapper	UHGV-0190480_11	203123.OEOE_0904	147.0	6.77e-39	Metal dependent phosphohydrolases with conserved 'HD' motif.	N/A
Pfam	UHGV-0190480_11	PF01966	N/A	N/A	HD domain	HD
NCBIFam	UHGV-0190480_11	TIGR00277.1	N/A	N/A	HDIG domain-containing protein	N/A
COG	UHGV-0190480_11	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0190480_11	PF13742,PF01966,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
KOfam	UHGV-0190480_12	K02335	364.1	0	polA; DNA polymerase I [EC:2.7.7.7]	N/A
PHROG	UHGV-0190480_12	phrog_17	329.8	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190480_12	UniRef90_A0A7X7H672	546.0	0	DNA polymerase I	N/A
eggNOG-mapper	UHGV-0190480_12	1121930.AQXG01000001_gene1415	218.0	0	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	N/A
PADLOC	UHGV-0190480_12	drt-cluster58	73.5	4.5e-21	DRT	DRT
Pfam	UHGV-0190480_12	PF01612	N/A	N/A	3'-5' exonuclease	DNA_pol_A_exo1
Pfam	UHGV-0190480_12	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0190480_12	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0190480_12	PF00476,PF01612,MF_04101,NF011541,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0190480_13	phrog_59	86.2	2.8e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190480_13	UniRef90_A0A3B8SUV1	80.9	0.00000000000000181	Endonuclease	N/A
eggNOG-mapper	UHGV-0190480_13	1572704.A0A0D3MVE4_9CAUD	73.9	0.000000000000582	sequence-specific DNA binding transcription factor activity	N/A
PADLOC	UHGV-0190480_13	HEase_00016	63.7	1.4e-18	homing endonuclease	RM
KOfam	UHGV-0190480_15	K01493	62.5	8.1e-18	comEB; dCMP deaminase [EC:3.5.4.12]	N/A
PHROG	UHGV-0190480_15	phrog_174	70.6	1.7e-20	dCMP deaminase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190480_15	UniRef90_A0A534LD92	92.8	2.69e-20	CMP/dCMP-type deaminase domain-containing protein	N/A
eggNOG-mapper	UHGV-0190480_15	313598.MED152_08975	65.1	0.0000000000262	MafB19-like deaminase	N/A
Pfam	UHGV-0190480_15	PF00383	N/A	N/A	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
COG	UHGV-0190480_15	COG2131	N/A	N/A	Deoxycytidylate deaminase	N/A
structural_annotation	UHGV-0190480_15	PF00383,MF_00972,TIGR02571,COG2131	N/A	N/A	N/A	N/A
KOfam	UHGV-0190480_18	K15518	41.9	0.00000000000089	dgk; deoxyguanosine kinase [EC:2.7.1.113]	N/A
PHROG	UHGV-0190480_18	phrog_761	70.4	2.5e-20	thymidylate kinase	other
UniRef90	UHGV-0190480_18	UniRef90_A0A7X7BY76	111.0	2.38e-28	AAA family ATPase	N/A
Pfam	UHGV-0190480_18	PF02223	N/A	N/A	Thymidylate kinase	Thymidylate_kin
structural_annotation	UHGV-0190480_18	PF03976,MF_00165,TIGR00041,COG1428	N/A	N/A	N/A	N/A
KOfam	UHGV-0190480_19	K03465	93.2	3.2e-27	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0190480_19	phrog_85	48.9	0.0000000000001	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190480_19	UniRef90_A0A2N5Q030	203.0	0	Thymidylate synthase (FAD)	N/A
eggNOG-mapper	UHGV-0190480_19	33035.JPJF01000081_gene249	201.0	0	Thymidylate synthase complementing protein	N/A
Pfam	UHGV-0190480_19	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
COG	UHGV-0190480_19	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-0190480_19	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0190480_21	phrog_173	49.0	3.3e-18	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190480_21	UniRef90_B7GIM0	66.6	0.000000000061	Phage-encoded dCTP pyrophosphatase	N/A
eggNOG-mapper	UHGV-0190480_21	491915.Aflv_0655	66.6	0.0000000000102	dUTPase	N/A
Pfam	UHGV-0190480_21	PF08761	N/A	N/A	dUTPase	dUTPase_2
COG	UHGV-0190480_21	COG4508	N/A	N/A	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	N/A
PHROG	UHGV-0190480_22	phrog_434	273.1	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190480_22	UniRef90_A0A7X7BYB4	251.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0190480_22	1449063.JMLS01000013_gene6132	174.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-0190480_22	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0190480_22	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0190480_22	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0190480_22	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0190480_24	K02316	92.3	5.3e-27	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0190480_24	phrog_18685	317.9	0	N/A	unknown function
UniRef90	UHGV-0190480_24	UniRef90_A0A661MUG1	488.0	0	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-0190480_24	360911.EAT1b_0006	300.0	0	DNA primase activity	N/A
Pfam	UHGV-0190480_24	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-0190480_24	PF13155	N/A	N/A	Toprim-like	Toprim_2
Pfam	UHGV-0190480_24	PF00493	N/A	N/A	MCM P-loop domain	MCM
COG	UHGV-0190480_24	COG1241	N/A	N/A	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	N/A
structural_annotation	UHGV-0190480_24	PF00493,PF01807,PF13155,PF14947,MF_00974,MF_01314,NF040949,TIGR01391,COG1241	N/A	N/A	N/A	N/A
PHROG	UHGV-0190480_25	phrog_2402	71.8	8.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0190480_25	462590.A9J4Z6_BPPYU	54.7	0.00000565	N/A	N/A
structural_annotation	UHGV-0190480_25	PF18897	N/A	N/A	N/A	N/A
KOfam	UHGV-0190480_26	K03469	95.5	7.7e-28	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0190480_26	phrog_531	91.8	6.2e-27	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190480_26	UniRef90_A0A7X8XIX5	167.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0190480_26	1121451.DESAM_20563	75.5	0.0000000000000233	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0190480_26	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0190480_26	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0190480_26	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
KOfam	UHGV-0190480_27	K18951	226.7	0	gp30; DNA ligase [EC:6.5.1.1]	N/A
PHROG	UHGV-0190480_27	phrog_114	208.5	0	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190480_27	UniRef90_A0A3D0Y9V5	246.0	0	ATP-dependent DNA ligase	N/A
eggNOG-mapper	UHGV-0190480_27	1280.SAXN108_2170	163.0	9.62692e-43	ATP dependent DNA ligase domain	N/A
Pfam	UHGV-0190480_27	PF01068	N/A	N/A	ATP dependent DNA ligase domain	DNA_ligase_A_M
Pfam	UHGV-0190480_27	PF14743	N/A	N/A	DNA ligase OB-like domain	DNA_ligase_OB_2
COG	UHGV-0190480_27	COG1793	N/A	N/A	ATP-dependent DNA ligase	N/A
structural_annotation	UHGV-0190480_27	PF01068,PF17879,MF_00407,NF002868,COG1793	N/A	N/A	N/A	N/A
KOfam	UHGV-0190480_28	K03091	66.8	4.4e-19	sigH; RNA polymerase sporulation-specific sigma factor	N/A
UniRef90	UHGV-0190480_28	UniRef90_A0A4R6AG29	58.5	0.000000125	Sigma-70 family RNA polymerase sigma factor	N/A
Pfam	UHGV-0190480_28	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
NCBIFam	UHGV-0190480_28	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0190480_28	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0190480_28	PF04542,PF08281,MF_00962,NF006158,COG1191	N/A	N/A	N/A	N/A
UniRef90	UHGV-0190480_29	UniRef90_A0A7X7BYB6	69.3	0.000000000000561	VRR-NUC domain-containing protein	N/A
KOfam	UHGV-0190480_30	K14440	109.9	1.6e-32	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0190480_30	phrog_62	267.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190480_30	UniRef90_A0A7X7BY88	504.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0190480_30	1280676.AUJO01000007_gene2148	187.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-0190480_30	DpdE_00003	59.8	3.1e-17	DpdE	DPD
Pfam	UHGV-0190480_30	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0190480_30	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0190480_30	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0190480_30	PF04851,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
KOfam	UHGV-0190480_32	K07273	153.8	1.4013e-45	acm; lysozyme	N/A
PHROG	UHGV-0190480_32	phrog_291	168.5	0	endolysin	lysis
UniRef90	UHGV-0190480_32	UniRef90_C4F8J2	382.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0190480_32	521003.COLINT_02363	382.0	0	CW_7 repeat	N/A
Pfam	UHGV-0190480_32	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0190480_32	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-0190480_32	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0190480_32	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0190480_32	PF01183,PF01476,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0190480_33	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0190480_35	phrog_15074	113.0	9.3e-34	N/A	unknown function
eggNOG-mapper	UHGV-0190480_35	445975.COLSTE_02153	127.0	5.83e-28	Prophage endopeptidase tail	N/A
COG	UHGV-0190480_35	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0190480_37	phrog_1194	65.5	7.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0190480_37	1294142.CINTURNW_1039	49.7	0.00000609	N/A	N/A
structural_annotation	UHGV-0190480_37	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0190480_38	phrog_305	97.1	5.60519e-45	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0190480_38	1123288.SOV_6c00240	105.0	2.74e-20	tape measure	N/A
Pfam	UHGV-0190480_38	PF20155	N/A	N/A	Tape measure protein	TMP_3
COG	UHGV-0190480_38	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-0190480_39	phrog_2115	78.7	7.8e-23	tail protein	tail
eggNOG-mapper	UHGV-0190480_39	1382315.JPOI01000001_gene275	67.8	0.00000000000037	N/A	N/A
structural_annotation	UHGV-0190480_39	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0190480_40	phrog_88	170.4	0	major tail protein	tail
UniRef90	UHGV-0190480_40	UniRef90_A0A7V7B018	222.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0190480_40	649747.HMPREF0083_01004	130.0	4.1e-35	Phage major tail protein phi13	N/A
Pfam	UHGV-0190480_40	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0190480_40	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0190480_40	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0190480_40	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
Pfam	UHGV-0190480_41	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0190480_41	PF12691	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0190480_43	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0190480_44	phrog_1732	61.1	1.6e-17	N/A	unknown function
PHROG	UHGV-0190480_46	phrog_1005	308.6	0	major head protein	head and packaging
UniRef90	UHGV-0190480_46	UniRef90_A0A316D4V5	358.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-0190480_46	1121121.KB894295_gene4458	158.0	4.66632e-43	N/A	N/A
structural_annotation	UHGV-0190480_46	PF03864,MF_04133,NF041162,COG1659	N/A	N/A	N/A	N/A
PHROG	UHGV-0190480_47	phrog_673	59.3	8e-17	head scaffolding protein	head and packaging
Pfam	UHGV-0190480_47	PF09956	N/A	N/A	N/A	DUF2190
structural_annotation	UHGV-0190480_47	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0190480_49	phrog_1530	86.9	3.1e-25	DNA methyltransferase	other
UniRef90	UHGV-0190480_49	UniRef90_A0A7X8AV76	174.0	0	Peptidase_S78_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0190480_49	1235793.C809_02227	131.0	1.11e-35	Putative phage serine protease XkdF	N/A
Pfam	UHGV-0190480_49	PF14550	N/A	N/A	Putative phage serine protease XkdF	Peptidase_S78_2
PHROG	UHGV-0190480_50	phrog_113	181.6	0	portal protein	head and packaging
UniRef90	UHGV-0190480_50	UniRef90_A0A1C5RGK5	375.0	0	Mu-like prophage protein gp29	N/A
eggNOG-mapper	UHGV-0190480_50	1235793.C809_02225	377.0	0	Mu-like prophage protein gp29	N/A
COG	UHGV-0190480_50	COG4383	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0190480_50	PF06074,MF_04135,TIGR01537,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0190480_51	K06909	56.0	6.9e-16	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0190480_51	phrog_979	380.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0190480_51	UniRef90_A0A7X7BY57	550.0	0	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0190480_51	173824.Q9HH54_9CAUD	317.0	0	Terminase-like family	N/A
Pfam	UHGV-0190480_51	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0190480_51	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0190480_51	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
structural_annotation	UHGV-0190480_51	PF04466,PF17289,MF_04145,TIGR01547,COG5323	N/A	N/A	N/A	N/A
KOfam	UHGV-0190480_52	K16628	61.6	2.8e-18	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0190480_52	phrog_5073	94.7	5.4e-28	tail fiber protein	tail
Pfam	UHGV-0190480_52	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0190480_53	phrog_443	43.5	0.0000000000077	holin	lysis
UniRef90	UHGV-0190480_53	UniRef90_A0A6L7IPY0	75.9	2.32e-16	Holin	N/A
eggNOG-mapper	UHGV-0190480_53	1437608.BBIA_0612	52.4	0.000000094	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0190480_53	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0190480_56	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0190480_57	phrog_16490	75.0	1.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0190480_57	641112.ACOK01000103_gene525	93.6	9.54e-21	N/A	N/A
PHROG	UHGV-0190480_59	phrog_21718	44.7	0.000000000002	N/A	unknown function
eggNOG-mapper	UHGV-0190480_59	476272.RUMHYD_01768	64.3	0.0000000000301	N/A	N/A
PHROG	UHGV-0190480_61	phrog_2214	60.7	2.2e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190480_61	UniRef90_A0A7W1YBI2	53.5	0.000000311	HNH endonuclease	N/A
Pfam	UHGV-0190480_61	PF14279	N/A	N/A	HNH endonuclease	HNH_5
COG	UHGV-0190480_61	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0190480_62	phrog_6299	51.9	0.000000000000012	terminase small subunit	head and packaging
eggNOG-mapper	UHGV-0190480_62	68570.DC74_2977	65.5	0.000000000471	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0190480	Yes	58,725	43	99	1
UHGV-0206238	No	58,719	43	99	1
UHGV-0187714	No	56,333	43	95	1
UHGV-0190871	No	41,842	43	71	1
UHGV-0172456	No	38,147	44	65	1
UHGV-0181081	No	25,524	45	43	1
UHGV-0171997	No	17,795	44	30	1