vOTU vOTU-011478

vOTU: vOTU-011478

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-011478
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella parvula_A
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00063 → vGENUS-00033 → vSUBGEN-01362 → vOTU-011478
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella parvula_A
Host range breadth	Species
Lifestyle	temperate (Evidence: geNomad)

Representative genome
Genome ID	UHGV-0200445
Biosample ID	N/A
Genome length (bp)	35,867 bps
CheckV completeness	99.90% (High-quality)
CDS count	53
CDS density	96.00%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella parvula_A	Total connections	140	Host agreement	80.71
PHIST-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella parvula_A	Total connections	17	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
COG	UHGV-0200445_3	COG2165	N/A	N/A	Type II secretory pathway, pseudopilin PulG	N/A
KOfam	UHGV-0200445_4	K02654	68.6	1.1e-19	pilD, pppA; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]	N/A
UniRef90	UHGV-0200445_4	UniRef90_A0A811GGS9	361.0	0	Peptidase_A24 domain-containing protein	N/A
eggNOG-mapper	UHGV-0200445_4	479436.Vpar_1081	342.0	0	aspartic-type endopeptidase activity	N/A
Pfam	UHGV-0200445_4	PF01478	N/A	N/A	Type IV leader peptidase family	Peptidase_A24
COG	UHGV-0200445_4	COG1989	N/A	N/A	Prepilin signal peptidase PulO (type II secretory pathway) or related peptidase	N/A
UniRef90	UHGV-0200445_5	UniRef90_W1XAK8	96.3	8.2e-25	Type II secretory pathway pseudopilin PulG-like protein (Fragment)	N/A
eggNOG-mapper	UHGV-0200445_5	479436.Vpar_1082	115.0	1.87e-32	General secretion pathway protein	N/A
COG	UHGV-0200445_5	COG2165	N/A	N/A	Type II secretory pathway, pseudopilin PulG	N/A
PHROG	UHGV-0200445_7	phrog_10797	187.2	0	N/A	unknown function
UniRef90	UHGV-0200445_7	UniRef90_UPI0018C518C1	118.0	6.96e-30	glycoprotease	N/A
eggNOG-mapper	UHGV-0200445_7	883156.HMPREF9282_01266	149.0	3.9937e-43	N/A	N/A
structural_annotation	UHGV-0200445_7	PF06531	N/A	N/A	N/A	N/A
KOfam	UHGV-0200445_8	K07273	157.1	0	acm; lysozyme	N/A
PHROG	UHGV-0200445_8	phrog_6745	124.2	1.1e-36	endolysin	lysis
UniRef90	UHGV-0200445_8	UniRef90_UPI001D0872FD	400.0	0	glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0200445_8	910314.HMPREF9220_0603	268.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0200445_8	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0200445_8	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0200445_8	PF01183,NF008377,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0200445_9	phrog_199	40.1	0.000000000026	holin	lysis
UniRef90	UHGV-0200445_9	UniRef90_UPI000E74DE8A	331.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0200445_9	883156.HMPREF9282_00970	246.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0200445_9	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
structural_annotation	UHGV-0200445_9	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0200445_10	phrog_9854	520.2	0	N/A	unknown function
UniRef90	UHGV-0200445_10	UniRef90_UPI000E7651BD	2877.0	0	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-0200445_10	401526.TcarDRAFT_1293	885.0	0	protein secretion by the type IV secretion system	N/A
Pfam	UHGV-0200445_10	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0200445_10	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0200445_10	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
structural_annotation	UHGV-0200445_10	PF18857,PF18013	N/A	N/A	N/A	N/A
UniRef90	UHGV-0200445_12	UniRef90_UPI001D07B8A4	637.0	0	Hint domain-containing protein	N/A
eggNOG-mapper	UHGV-0200445_12	1123288.SOV_4c02760	115.0	2.04e-25	N/A	N/A
Pfam	UHGV-0200445_12	PF13403	N/A	N/A	Hint domain	Hint_2
structural_annotation	UHGV-0200445_12	PF07591,NF038136,TIGR03017,COG4942	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0200445_13	PF11039,MF_00084,NF000482,COG3818	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0200445_15	PF20747	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0200445_16	1485543.JMME01000005_gene872	349.0	0	N/A	N/A
structural_annotation	UHGV-0200445_16	PF11134,MF_00923,NF000022,COG4257	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0200445_17	PF20387	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0200445_18	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0200445_19	phrog_334	206.0	0	major head protein	head and packaging
UniRef90	UHGV-0200445_19	UniRef90_UPI000E723A53	623.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0200445_19	401526.TcarDRAFT_1286	256.0	0	N/A	N/A
Pfam	UHGV-0200445_19	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0200445_19	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0200445_19	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0200445_21	phrog_156	348.3	0	portal protein	head and packaging
UniRef90	UHGV-0200445_21	UniRef90_F7NK66	362.0	0	Putative phage portal protein	N/A
eggNOG-mapper	UHGV-0200445_21	401526.TcarDRAFT_1284	395.0	0	Tfp pilus assembly protein FimV	N/A
Pfam	UHGV-0200445_21	PF16510	N/A	N/A	Phage P22-like portal protein	P22_portal
COG	UHGV-0200445_21	COG3170	N/A	N/A	Type IV pilus assembly protein FimV	N/A
structural_annotation	UHGV-0200445_21	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0200445_23	K06909	134.6	8.60001e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0200445_23	phrog_2	122.5	5.3e-36	terminase large subunit	head and packaging
UniRef90	UHGV-0200445_23	UniRef90_UPI001D073785	918.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0200445_23	401526.TcarDRAFT_1283	315.0	0	Phage terminase large subunit (GpA)	N/A
Pfam	UHGV-0200445_23	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0200445_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0200445_23	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0200445_24	phrog_309	120.3	7.3e-36	terminase small subunit	head and packaging
UniRef90	UHGV-0200445_24	UniRef90_UPI001B3C9B19	129.0	6.28e-36	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0200445_24	1416334.X2CXN2_9CAUD	107.0	1.15e-27	endonuclease activity	N/A
structural_annotation	UHGV-0200445_24	PF07141	N/A	N/A	N/A	N/A
UniRef90	UHGV-0200445_26	UniRef90_A0A847PRP4	55.8	0.00000000602	Helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0200445_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0200445_26	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0200445_26	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-0200445_28	phrog_36	44.1	0.0000000000036	transcriptional regulator	transcription regulation
UniRef90	UHGV-0200445_28	UniRef90_A0A6N2ZMD2	57.0	0.000000303	Sigma-70, region 4	N/A
eggNOG-mapper	UHGV-0200445_28	706434.HMPREF9429_00383	61.2	0.00000000129	N/A	N/A
structural_annotation	UHGV-0200445_28	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0200445_29	phrog_3878	48.7	0.00000000000014	N/A	unknown function
PHROG	UHGV-0200445_30	phrog_774	76.2	4.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-0200445_30	1435051.BMOU_0242	55.1	0.0000000701	Helix-turn-helix domain	N/A
COG	UHGV-0200445_30	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
KOfam	UHGV-0200445_31	K01520	131.8	5.1e-39	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0200445_31	phrog_135	140.3	8.00001e-42	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0200445_31	UniRef90_UPI001D07D29E	262.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0200445_31	66692.ABC2847	129.0	3.38e-36	deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
Pfam	UHGV-0200445_31	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0200445_31	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0200445_31	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0200445_31	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-0200445_32	K01160	47.4	0.00000000000047	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0200445_32	phrog_140	41.9	0.000000000016	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0200445_32	UniRef90_UPI001D065A38	266.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0200445_32	1273103.NM10_01114	104.0	5.4e-27	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0200445_32	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
structural_annotation	UHGV-0200445_32	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0200445_33	phrog_21026	72.3	6e-21	N/A	unknown function
KOfam	UHGV-0200445_35	K00558	254.3	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0200445_35	phrog_116	279.5	0	DNA methyltransferase	other
UniRef90	UHGV-0200445_35	UniRef90_E4L8C0	506.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0200445_35	910314.HMPREF9220_1103	506.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0200445_35	MTase_II_00058	296.7	0	Type II methyltransferase	RM
Pfam	UHGV-0200445_35	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0200445_35	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0200445_35	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0200445_35	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0200445_37	PF11305,MF_01360	N/A	N/A	N/A	N/A
PHROG	UHGV-0200445_38	phrog_954	230.8	0	DNA methyltransferase	other
UniRef90	UHGV-0200445_38	UniRef90_UPI001D071710	297.0	0	class I SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0200445_38	1401067.HMPREF0872_03435	266.0	0	methyltransferase	N/A
PADLOC	UHGV-0200445_38	MTase_II_00074	214.6	0	Type II methyltransferase	RM
Pfam	UHGV-0200445_38	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0200445_38	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-0200445_38	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
PHROG	UHGV-0200445_40	phrog_1672	55.8	6.9e-16	N/A	unknown function
UniRef90	UHGV-0200445_40	UniRef90_F5L204	94.4	3.27e-22	Conserved domain protein	N/A
KOfam	UHGV-0200445_41	K07727	73.4	4.7e-21	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-0200445_41	phrog_38620	52.3	0.00000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-0200445_41	UniRef90_UPI00177DA212	62.0	0.00000000402	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0200445_41	1114972.AUAW01000005_gene264	55.8	0.0000000155	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0200445_41	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
KOfam	UHGV-0200445_42	K03111	147.7	1.09301e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0200445_42	phrog_44	126.2	2.5e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0200445_42	UniRef90_UPI0019613F2D	239.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0200445_42	936589.HMPREF1521_1228	191.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0200445_42	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0200445_42	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0200445_42	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0200445_42	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0200445_42	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0200445_43	phrog_5070	66.6	2.5e-19	N/A	unknown function
UniRef90	UHGV-0200445_43	UniRef90_C6L9Y5	91.3	2.57e-20	Bacterial transferase hexapeptide repeat protein	N/A
eggNOG-mapper	UHGV-0200445_43	887929.HMP0721_1276	105.0	3.87e-27	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
COG	UHGV-0200445_43	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
PHROG	UHGV-0200445_44	phrog_9804	81.0	1.4e-23	N/A	unknown function
UniRef90	UHGV-0200445_44	UniRef90_W9E7Y7	57.8	0.000000427	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0200445_44	1094508.Tsac_2439	57.8	0.0000000716	Loader and inhibitor of phage G40P	N/A
PHROG	UHGV-0200445_45	phrog_1163	219.0	0	N/A	unknown function
UniRef90	UHGV-0200445_45	UniRef90_UPI001D075DB7	532.0	0	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0200445_45	372457.A7DYC7_9CAUD	201.0	0	calcium ion binding	N/A
Pfam	UHGV-0200445_45	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0200445_45	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
structural_annotation	UHGV-0200445_45	PF09524,PF09681,TIGR02220,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0200445_46	K07451	56.2	7.1e-16	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0200445_46	phrog_119	50.5	0.000000000000029	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0200445_46	UniRef90_UPI001D092C21	181.0	0	HNH endonuclease	N/A
Pfam	UHGV-0200445_46	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0200445_46	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0200445_46	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0200445_47	phrog_72	54.4	0.0000000000000015	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0200445_47	UniRef90_R5BGH3	127.0	5.42e-34	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0200445_47	445972.ANACOL_01825	102.0	6.12e-25	N/A	N/A
PHROG	UHGV-0200445_48	phrog_14970	279.1	0	N/A	unknown function
UniRef90	UHGV-0200445_48	UniRef90_A0A1C5NV07	221.0	0	DNA damage response protein A	N/A
eggNOG-mapper	UHGV-0200445_48	428127.EUBDOL_01248	215.0	0	double-strand break repair protein	N/A
COG	UHGV-0200445_48	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0200445_48	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0200445_49	phrog_253	135.9	2.1e-40	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0200445_49	UniRef90_UPI001D06B209	283.0	0	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0200445_49	1226322.HMPREF1545_04074	90.9	6.92e-21	Siphovirus Gp157	N/A
Pfam	UHGV-0200445_49	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0200445_49	PF05565,NF002139	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0200445_51	NF007883	N/A	N/A	N/A	N/A
PHROG	UHGV-0200445_52	phrog_7735	85.0	6.6e-25	excisionase	integration and excision
UniRef90	UHGV-0200445_52	UniRef90_UPI00195FD229	117.0	4.28e-32	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0200445_52	862517.HMPREF9225_0695	53.1	0.0000000981	N/A	N/A
Pfam	UHGV-0200445_52	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0200445_52	PF12728,NF033787,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0200445_53	UniRef90_UPI000E713103	55.8	0.0000000048	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0200445_53	1304866.K413DRAFT_0834	56.2	0.00000000135	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0200445_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0200445_53	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0200445_53	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0200445	Yes	35,867	39	100	1
UHGV-0143119	No	39,512	38	100	1