vOTU vOTU-011505

vOTU: vOTU-011505

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-011505
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-01629 → vGENUS-01702 → vSUBGEN-35563 → vOTU-011505
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0201910
Biosample ID	SAMN05414944
Genome length (bp)	40,939 bps
CheckV completeness	93.69% (High-quality)
CDS count	52
CDS density	92.61%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	90	Host agreement	72.22
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 93.69)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0201910_1	UniRef90_A0A8F0WD75	76.6	0.0000000000000234	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0201910_1	1408437.JNJN01000043_gene801	72.4	0.000000000000171	N/A	N/A
structural_annotation	UHGV-0201910_2	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0201910_3	phrog_16490	55.2	0.0000000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0201910_3	397290.C810_05212	62.4	0.00000000569	N/A	N/A
PHROG	UHGV-0201910_4	phrog_22984	46.6	0.00000000000057	N/A	unknown function
UniRef90	UHGV-0201910_6	UniRef90_A0A658JVX5	67.8	0.000000000000204	Sigma-70 family RNA polymerase sigma factor	N/A
Pfam	UHGV-0201910_6	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-0201910_6	PF04545,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0201910_7	K01447	95.4	8.9e-28	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0201910_7	phrog_670	119.2	4e-35	endolysin	lysis
UniRef90	UHGV-0201910_7	UniRef90_A0A252F607	205.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0201910_7	411463.EUBVEN_00418	199.0	0	Ami_2	N/A
Pfam	UHGV-0201910_7	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0201910_7	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0201910_7	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0201910_7	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0201910_8	phrog_1129	58.6	7.9e-17	holin	lysis
UniRef90	UHGV-0201910_8	UniRef90_R5D220	131.0	3.76e-38	Putative holin	N/A
eggNOG-mapper	UHGV-0201910_8	1007096.BAGW01000032_gene1582	111.0	5.29e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0201910_8	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0201910_8	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0201910_9	428125.CLOLEP_01434	62.8	0.00000000926	N/A	N/A
PHROG	UHGV-0201910_10	phrog_13589	189.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0201910_10	428125.CLOLEP_01434	232.0	0	N/A	N/A
PHROG	UHGV-0201910_11	phrog_31538	49.7	0.000000000000073	N/A	unknown function
eggNOG-mapper	UHGV-0201910_11	411460.RUMTOR_01351	53.9	0.000000129	N/A	N/A
PHROG	UHGV-0201910_12	phrog_15594	70.6	1.8e-20	N/A	unknown function
structural_annotation	UHGV-0201910_12	PF16640,TIGR04488	N/A	N/A	N/A	N/A
UniRef90	UHGV-0201910_13	UniRef90_A0A3D5TE86	135.0	1.8e-39	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0201910_13	1235835.C814_01206	104.0	4.4e-28	N/A	N/A
PHROG	UHGV-0201910_14	phrog_22978	507.9	0	N/A	unknown function
UniRef90	UHGV-0201910_14	UniRef90_R5G452	320.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0201910_14	1410650.JHWL01000003_gene2814	298.0	0	N/A	N/A
PHROG	UHGV-0201910_15	phrog_2649	57.7	3.1e-16	endolysin	lysis
UniRef90	UHGV-0201910_15	UniRef90_A0A645A9U3	172.0	2.8026e-45	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0201910_15	1410650.JHWL01000003_gene2815	135.0	3.31e-32	N/A	N/A
Pfam	UHGV-0201910_15	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
structural_annotation	UHGV-0201910_15	PF01471,TIGR02869	N/A	N/A	N/A	N/A
PHROG	UHGV-0201910_16	phrog_372	234.2	0	tail protein	tail
UniRef90	UHGV-0201910_16	UniRef90_UPI001D0897E0	243.0	0	N/A	N/A
eggNOG-mapper	UHGV-0201910_16	1235802.C823_05263	236.0	0	N/A	N/A
Pfam	UHGV-0201910_16	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0201910_16	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0201910_17	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-0201910_18	phrog_511	187.5	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0201910_18	1410650.JHWL01000003_gene2827	307.0	0	N/A	N/A
structural_annotation	UHGV-0201910_18	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0201910_19	phrog_12105	130.2	8.3e-39	N/A	unknown function
eggNOG-mapper	UHGV-0201910_19	1226322.HMPREF1545_03850	91.7	3.74e-22	N/A	N/A
PHROG	UHGV-0201910_21	phrog_1357	201.6	0	major head protein	head and packaging
UniRef90	UHGV-0201910_21	UniRef90_A0A2V2CFL5	599.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0201910_21	1410650.JHWL01000003_gene2830	269.0	0	N/A	N/A
NCBIFam	UHGV-0201910_21	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0201910_21	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0201910_22	phrog_13908	186.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0201910_22	1410650.JHWL01000003_gene2831	99.8	4.01e-21	N/A	N/A
KOfam	UHGV-0201910_23	K07584	46.5	0.00000000000069	N/A	N/A
PHROG	UHGV-0201910_23	phrog_4478	50.4	0.000000000000033	peptidase	other
UniRef90	UHGV-0201910_23	UniRef90_UPI00102FFAFD	58.2	0.00000000706	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0201910_23	1120973.AQXL01000127_gene2693	51.2	0.000000792	Cysteine protease Prp	N/A
Pfam	UHGV-0201910_23	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0201910_23	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0201910_23	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0201910_24	phrog_156	297.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0201910_24	1410650.JHWL01000003_gene2833	536.0	0	N/A	N/A
structural_annotation	UHGV-0201910_24	PF16510,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0201910_25	K06909	136.9	1.90001e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0201910_25	phrog_979	126.0	1.3e-38	terminase large subunit	head and packaging
UniRef90	UHGV-0201910_25	UniRef90_A0A810Q5R0	621.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0201910_25	1410650.JHWL01000003_gene2834	566.0	0	N/A	N/A
Pfam	UHGV-0201910_25	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0201910_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0201910_25	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0201910_26	phrog_606	80.6	1.9e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0201910_26	UniRef90_UPI00195648BB	170.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0201910_26	445972.ANACOL_01838	136.0	3.43e-39	DNA-packaging protein gp3	N/A
Pfam	UHGV-0201910_26	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0201910_26	PF16677	N/A	N/A	N/A	N/A
UniRef90	UHGV-0201910_28	UniRef90_A0A1Q9JGI6	140.0	6.50001e-40	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0201910_28	1118055.CAGU01000028_gene99	120.0	1.23e-32	N/A	N/A
structural_annotation	UHGV-0201910_28	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
UniRef90	UHGV-0201910_32	UniRef90_A0A8D9PDK2	57.8	0.00000000748	Zinc-ribbon containing domain	N/A
Pfam	UHGV-0201910_33	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0201910_33	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0201910_33	PF14354,TIGR03655,COG4888	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0201910_34	445972.ANACOL_00168	51.2	0.0000000978	N/A	N/A
KOfam	UHGV-0201910_35	K00390	47.1	4.1e-22	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0201910_35	phrog_424	138.7	9.80068e-42	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0201910_35	UniRef90_A0A0U3EGR7	327.0	0	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0201910_35	742823.HMPREF9465_01257	302.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0201910_35	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0201910_35	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0201910_35	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0201910_39	K01160	60.4	5.5e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0201910_39	phrog_34	56.8	4.4e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201910_39	UniRef90_UPI0018ABA1B6	154.0	1.4013e-45	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0201910_39	525919.Apre_0813	112.0	2.17e-30	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0201910_39	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0201910_39	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0201910_39	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0201910_41	phrog_15768	127.1	1.4e-37	N/A	unknown function
UniRef90	UHGV-0201910_41	UniRef90_UPI00189C2664	122.0	4.41e-31	N/A	N/A
eggNOG-mapper	UHGV-0201910_41	642492.Clole_0946	79.7	0.00000000000000269	DnaD domain protein	N/A
AcrCatalog	UHGV-0201910_41	cluster_38323	89.0	2.26e-23	NA	N/A
Pfam	UHGV-0201910_41	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0201910_41	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0201910_41	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0201910_42	K03111	138.1	9.19994e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0201910_42	phrog_44	140.8	7.60064e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201910_42	UniRef90_A0A810QFR8	180.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0201910_42	1007096.BAGW01000023_gene151	177.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0201910_42	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0201910_42	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0201910_42	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0201910_42	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0201910_42	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-0201910_43	UniRef90_UPI001F4CC127	52.8	0.0000000824	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0201910_43	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0201910_43	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0201910_44	phrog_59	126.1	1.5e-37	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201910_44	UniRef90_S5NS99	105.0	2.32e-25	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0201910_44	749413.E5DV63_9VIRU	97.4	2.09e-22	HNH endonuclease	N/A
PADLOC	UHGV-0201910_44	HEase_00016	74.7	2.9e-23	homing endonuclease	RM
Pfam	UHGV-0201910_44	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0201910_44	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0201910_44	PF07463,PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-0201910_45	phrog_72	58.2	9.8e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201910_45	UniRef90_A0A8D9PDS2	248.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0201910_45	445972.ANACOL_01825	143.0	6.39006e-41	N/A	N/A
structural_annotation	UHGV-0201910_45	PF05772,NF007281	N/A	N/A	N/A	N/A
Pfam	UHGV-0201910_46	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
structural_annotation	UHGV-0201910_46	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-0201910_47	UniRef90_A0A845QLQ8	186.0	0	N/A	N/A
eggNOG-mapper	UHGV-0201910_47	33035.JPJF01000135_gene5082	121.0	1.66e-31	N/A	N/A
Pfam	UHGV-0201910_47	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0201910_47	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
KOfam	UHGV-0201910_52	K06336	64.1	5.1e-18	tasA, cotN; spore coat-associated protein N	N/A
UniRef90	UHGV-0201910_52	UniRef90_A0A1C5M265	257.0	0	SipW-cognate class signal peptide	N/A
Pfam	UHGV-0201910_52	PF12389	N/A	N/A	Camelysin metallo-endopeptidase	Peptidase_M73
NCBIFam	UHGV-0201910_52	TIGR04088.1	N/A	N/A	SipW-dependent-type signal peptide-containing protein	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0201910	Yes	40,939	59	94	1
UHGV-1507203	No	39,842	59	91	1
UHGV-1530138	No	38,903	59	89	1
UHGV-1472463	No	30,614	60	70	1
UHGV-2020399	No	12,437	61	29	1