vOTU vOTU-011704

vOTU: vOTU-011704

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-011704
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00200 → vGENUS-01046 → vSUBGEN-25554 → vOTU-011704
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0019087
Biosample ID	SAMEA4765932
Genome length (bp)	36,230 bps
CheckV completeness	99.90% (High-quality)
CDS count	50
CDS density	93.55%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	90	Host agreement	93.33
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	7	Host agreement	85.71

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0019087_1	K01447	82.4	7.5e-24	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0019087_1	phrog_35436	145.9	2.00386e-43	amidase	lysis
UniRef90	UHGV-0019087_1	UniRef90_A0A350TLR9	296.0	0	Peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0019087_1	1504823.CCMM01000008_gene1019	210.0	0	Ami_2	N/A
Pfam	UHGV-0019087_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0019087_1	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0019087_1	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0019087_1	PF01510,PF01471,MF_04111,NF008758,COG3023	N/A	N/A	N/A	N/A
PHROG	UHGV-0019087_2	phrog_1129	78.2	6.1e-23	holin	lysis
UniRef90	UHGV-0019087_2	UniRef90_A0A6A8VHY5	120.0	9.59e-34	Enolase	N/A
eggNOG-mapper	UHGV-0019087_2	1226322.HMPREF1545_00069	125.0	3.5e-36	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0019087_2	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0019087_2	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0019087_3	phrog_1863	64.2	1.3e-18	N/A	unknown function
eggNOG-mapper	UHGV-0019087_3	748224.HMPREF9436_01412	96.7	1.45e-25	N/A	N/A
structural_annotation	UHGV-0019087_5	NF033746,COG3764	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019087_6	UniRef90_A0A411ZUM8	64.7	0.000000205	Leucine-rich repeat domain-containing protein	N/A
eggNOG-mapper	UHGV-0019087_9	762211.BSTEL_0612	137.0	4e-35	N/A	N/A
PHROG	UHGV-0019087_10	phrog_1067	281.9	0	minor head protein	head and packaging
UniRef90	UHGV-0019087_10	UniRef90_A0A316NPB5	398.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0019087_10	1123263.AUKY01000068_gene489	306.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0019087_10	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0019087_10	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0019087_10	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0019087_10	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0019087_11	phrog_33	69.2	1e-19	distal tail protein Dit	tail
UniRef90	UHGV-0019087_11	UniRef90_A0A173Z1X4	174.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0019087_11	1160721.RBI_I01575	139.0	1.09e-37	Phage tail protein	N/A
COG	UHGV-0019087_11	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0019087_11	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0019087_12	phrog_6900	257.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0019087_12	UniRef90_A0A7X8M4B4	278.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0019087_12	1216932.CM240_0625	318.0	0	tape measure	N/A
COG	UHGV-0019087_12	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0019087_12	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0019087_15	phrog_88	81.9	8.4e-24	major tail protein	tail
UniRef90	UHGV-0019087_15	UniRef90_G9YSC5	123.0	1.01e-31	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0019087_15	33035.JPJF01000039_gene278	73.9	0.000000000000151	N/A	N/A
NCBIFam	UHGV-0019087_15	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0019087_15	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0019087_16	phrog_5	41.5	0.000000000028	tail completion or Neck1 protein	connector
UniRef90	UHGV-0019087_16	UniRef90_R6UNR2	131.0	4.03e-36	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0019087_16	908340.HMPREF9406_2573	131.0	6.76e-37	N/A	N/A
structural_annotation	UHGV-0019087_16	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019087_17	1235798.C817_04588	85.5	5.28e-20	N/A	N/A
structural_annotation	UHGV-0019087_17	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0019087_18	phrog_19734	121.5	4.6e-36	N/A	unknown function
UniRef90	UHGV-0019087_18	UniRef90_A0A6I7GNS7	131.0	8.81e-37	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0019087_18	349161.Dred_2602	85.1	1.18e-19	N/A	N/A
structural_annotation	UHGV-0019087_18	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0019087_19	phrog_749	66.2	4.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-0019087_19	349161.Dred_2603	85.9	1.34e-20	N/A	N/A
PHROG	UHGV-0019087_20	phrog_10	156.6	0	major head protein	head and packaging
UniRef90	UHGV-0019087_20	UniRef90_G9YSC0	719.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0019087_20	1235792.C808_00086	440.0	0	Phage capsid family	N/A
Pfam	UHGV-0019087_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0019087_20	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0019087_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0019087_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0019087_20	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0019087_21	K01358	131.2	1.1e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0019087_21	phrog_94	249.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0019087_21	UniRef90_A0A1Y4BT12	350.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0019087_21	349161.Dred_2605	303.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0019087_21	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0019087_21	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0019087_21	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0019087_22	phrog_12	121.1	2.1e-36	portal protein	head and packaging
UniRef90	UHGV-0019087_22	UniRef90_G9YSB8	516.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0019087_22	349161.Dred_2606	298.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0019087_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0019087_22	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0019087_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0019087_22	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0019087_23	phrog_9	245.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0019087_23	UniRef90_A0A6I7GGF0	930.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0019087_23	1235792.C808_00083	617.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0019087_23	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0019087_23	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0019087_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0019087_23	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0019087_24	phrog_5110	60.0	2.6e-17	terminase small subunit	head and packaging
UniRef90	UHGV-0019087_24	UniRef90_UPI00195E8788	112.0	1.51e-28	P27 family phage terminase small subunit	N/A
Pfam	UHGV-0019087_24	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0019087_24	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0019087_25	K03497	43.4	0.0000000000015	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0019087_25	phrog_21498	268.8	0	N/A	unknown function
UniRef90	UHGV-0019087_25	UniRef90_A0A7X2P836	285.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0019087_25	469378.Ccur_02830	269.0	0	DNA binding	N/A
PADLOC	UHGV-0019087_25	MTase_II_00015	87.7	1.7e-25	Type II methyltransferase	RM
Pfam	UHGV-0019087_25	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0019087_25	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0019087_25	PF02195,PF05869,MF_02015,TIGR00180,TIGR01712,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0019087_26	phrog_119	74.7	1.1e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019087_26	UniRef90_G9YSB5	156.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0019087_26	86416.Clopa_0335	79.3	1.13e-17	HNH nucleases	N/A
Pfam	UHGV-0019087_26	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0019087_26	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0019087_27	phrog_3584	82.7	3.4e-24	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0019087_27	693746.OBV_19950	234.0	0	N/A	N/A
structural_annotation	UHGV-0019087_27	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0019087_32	phrog_38832	78.7	4.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0019087_32	665956.HMPREF1032_03087	73.6	0.0000000000000222	N/A	N/A
structural_annotation	UHGV-0019087_32	PF18300,MF_01549,TIGR02450	N/A	N/A	N/A	N/A
PHROG	UHGV-0019087_33	phrog_1384	133.8	1.1e-39	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0019087_33	665956.HMPREF1032_03086	276.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0019087_33	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
KOfam	UHGV-0019087_38	K03497	71.2	2.2e-20	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0019087_38	phrog_27290	338.1	0	N/A	unknown function
UniRef90	UHGV-0019087_38	UniRef90_G4L1G7	285.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0019087_38	693746.OBV_19860	285.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0019087_38	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0019087_38	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0019087_38	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0019087_39	K03496	170.9	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0019087_39	phrog_164	135.3	4.6e-40	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019087_39	UniRef90_UPI000318E277	286.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0019087_39	1007096.BAGW01000033_gene1614	276.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0019087_39	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0019087_39	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0019087_39	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0019087_40	K02314	251.5	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0019087_40	phrog_19	221.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019087_40	UniRef90_UPI00195856D7	389.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0019087_40	1226322.HMPREF1545_00095	263.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0019087_40	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0019087_40	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0019087_40	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0019087_40	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0019087_41	phrog_270	115.5	6.4e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019087_41	UniRef90_UPI001F3D92C2	188.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0019087_41	742738.HMPREF9460_00851	149.0	2.59002e-41	Helix-turn-helix domain	N/A
Pfam	UHGV-0019087_41	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0019087_41	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0019087_41	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-0019087_43	phrog_6499	113.0	1.4e-33	transcriptional regulator	transcription regulation
UniRef90	UHGV-0019087_43	UniRef90_G9YL68	135.0	1.35e-37	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0019087_43	742738.HMPREF9460_00847	135.0	1.58e-38	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0019087_43	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0019087_43	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0019087_43	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0019087_44	K22300	60.1	4.7e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0019087_44	phrog_8	48.9	0.00000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0019087_44	UniRef90_UPI000F0D19B9	64.7	0.00000000000241	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0019087_44	1280680.AUJU01000017_gene3835	54.7	0.0000000611	Helix-turn-helix domain	N/A
Pfam	UHGV-0019087_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0019087_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0019087_44	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019087_45	UniRef90_A0A8J6JEY0	105.0	2.67e-27	Helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0019087_45	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0019087_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0019087_45	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019087_46	1519439.JPJG01000061_gene2005	65.9	0.00000000075	TM2 domain	N/A
Pfam	UHGV-0019087_46	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0019087_46	COG2314	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019087_46	PF08797,PF01668,TIGR00086,COG0691	N/A	N/A	N/A	N/A
KOfam	UHGV-0019087_48	K23779	46.6	0.00000000000067	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
Pfam	UHGV-0019087_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0019087_48	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0019087_48	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019087_49	1262449.CP6013_2082	156.0	0	N/A	N/A
structural_annotation	UHGV-0019087_49	PF11631,TIGR03066	N/A	N/A	N/A	N/A
KOfam	UHGV-0019087_50	K14059	157.5	0	int; integrase	N/A
PHROG	UHGV-0019087_50	phrog_1	148.9	3.78351e-44	integrase	integration and excision
UniRef90	UHGV-0019087_50	UniRef90_UPI001EDEB0AD	263.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0019087_50	1226322.HMPREF1545_00144	249.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0019087_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0019087_50	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0019087_50	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0019087	Yes	36,230	60	100	1
UHGV-0031875	No	32,934	60	97	1
UHGV-0018246	No	20,536	60	60	1