vOTU vOTU-011832

vOTU: vOTU-011832

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-011832
Number of genomes	7
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00673 → vSUBGEN-15189 → vOTU-011832
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1533521
Biosample ID	SAMN06110461
Genome length (bp)	35,431 bps
CheckV completeness	99.90% (High-quality)
CDS count	49
CDS density	90.50%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	1222	Host agreement	82.9
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	141	Host agreement	90.78

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1533521_1	K14059	214.9	0	int; integrase	N/A
PHROG	UHGV-1533521_1	phrog_1	186.8	0	integrase	integration and excision
UniRef90	UHGV-1533521_1	UniRef90_A0A2N0ULT2	465.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1533521_1	428125.CLOLEP_02743	315.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1533521_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1533521_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1533521_1	PF00589,PF02920,MF_01808,TIGR02224,COG4974,COG3422	N/A	N/A	N/A	N/A
KOfam	UHGV-1533521_2	K18843	63.1	6.2e-18	hicB; antitoxin HicB	N/A
PHROG	UHGV-1533521_2	phrog_497	69.6	6e-20	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1533521_2	UniRef90_A0A1E7S2B4	202.0	0	HicB-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1533521_2	903814.ELI_3151	202.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-1533521_2	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-1533521_2	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-1533521_2	PF15919,COG1598	N/A	N/A	N/A	N/A
PHROG	UHGV-1533521_3	phrog_353	79.4	2.7e-23	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1533521_3	UniRef90_A0A7X2NEB3	120.0	2.2e-34	Addiction module toxin, HicA family	N/A
eggNOG-mapper	UHGV-1533521_3	903814.ELI_3150	112.0	5.93e-32	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-1533521_3	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-1533521_3	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-1533521_3	PF07927,COG1724	N/A	N/A	N/A	N/A
PHROG	UHGV-1533521_4	phrog_1847	357.5	0	N/A	unknown function
UniRef90	UHGV-1533521_4	UniRef90_U2Q2K4	526.0	0	T5orf172 domain-containing protein	N/A
eggNOG-mapper	UHGV-1533521_4	1256908.HMPREF0373_00641	526.0	0	T5orf172	N/A
Pfam	UHGV-1533521_4	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-1533521_4	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1533521_4	PF13250,NF041454	N/A	N/A	N/A	N/A
PHROG	UHGV-1533521_5	phrog_1914	162.9	0	N/A	unknown function
UniRef90	UHGV-1533521_5	UniRef90_UPI000E543E50	220.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1533521_5	1160721.RBI_I01604	150.0	2.46629e-43	N/A	N/A
Pfam	UHGV-1533521_5	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1533521_5	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1533521_5	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1533521_6	phrog_2967	54.2	0.0000000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-1533521_6	UniRef90_A0A374ND72	187.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1533521_6	457412.RSAG_00795	118.0	1.4e-31	sequence-specific DNA binding	N/A
COG	UHGV-1533521_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1533521_6	PF13560,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1533521_7	UniRef90_A0A374N1V0	114.0	7.19e-32	N/A	N/A
eggNOG-mapper	UHGV-1533521_7	171693.BN988_01635	85.9	3.27e-21	N/A	N/A
Pfam	UHGV-1533521_7	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1533521_7	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1533521_7	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1533521_8	PF11614,TIGR02588,COG2847	N/A	N/A	N/A	N/A
UniRef90	UHGV-1533521_9	UniRef90_UPI0005510EBF	65.9	0.00000000000163	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-1533521_10	COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-1533521_15	phrog_8470	257.5	0	N/A	unknown function
UniRef90	UHGV-1533521_15	UniRef90_A0A1M7BII1	154.0	1.04e-35	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-1533521_15	397288.C806_03897	148.0	1.2e-34	PcfJ-like protein	N/A
Pfam	UHGV-1533521_15	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1533521_15	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1533521_16	phrog_15609	109.1	1.8e-35	N/A	unknown function
UniRef90	UHGV-1533521_16	UniRef90_A0A373SLQ6	99.0	6.04e-20	N/A	N/A
eggNOG-mapper	UHGV-1533521_16	1514668.JOOA01000001_gene225	71.6	0.0000000000422	N/A	N/A
structural_annotation	UHGV-1533521_16	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-1533521_19	phrog_8684	85.4	5.4e-25	N/A	unknown function
UniRef90	UHGV-1533521_19	UniRef90_UPI000A5AC279	92.4	1.89e-21	YopX family protein	N/A
eggNOG-mapper	UHGV-1533521_19	1235799.C818_02660	83.2	9.06e-19	YopX protein	N/A
Pfam	UHGV-1533521_19	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-1533521_19	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1533521_20	phrog_25754	69.6	1.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-1533521_20	97139.C824_00736	74.7	6.25e-16	N/A	N/A
structural_annotation	UHGV-1533521_20	PF10842,MF_00436,TIGR02383	N/A	N/A	N/A	N/A
PHROG	UHGV-1533521_22	phrog_2245	92.1	5.9e-27	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-1533521_22	UniRef90_A0A846K3D1	59.7	0.00000000155	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-1533521_22	926561.KB900623_gene754	61.6	0.0000000000418	N/A	N/A
structural_annotation	UHGV-1533521_23	PF14282,COG5570	N/A	N/A	N/A	N/A
KOfam	UHGV-1533521_24	K07317	48.1	0.00000000000013	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1533521_24	phrog_21201	64.6	1.4e-18	DNA methyltransferase	other
UniRef90	UHGV-1533521_24	UniRef90_A0A1C6BWK1	162.0	0	Modification methylase VspI	N/A
eggNOG-mapper	UHGV-1533521_24	272633.26454020	90.9	1.05e-20	DNA modification	N/A
COG	UHGV-1533521_24	COG1002	N/A	N/A	Type II restriction/modification system, endonuclease and methylase domains	N/A
structural_annotation	UHGV-1533521_24	PF20473,MF_02217,NF001556,COG0742	N/A	N/A	N/A	N/A
PHROG	UHGV-1533521_26	phrog_24518	76.0	4.9e-22	N/A	unknown function
eggNOG-mapper	UHGV-1533521_26	1519439.JPJG01000077_gene922	102.0	2.26e-24	N/A	N/A
PHROG	UHGV-1533521_27	phrog_824	145.2	2.00386e-43	N/A	unknown function
UniRef90	UHGV-1533521_27	UniRef90_A0A3D3D6C6	202.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1533521_27	397288.C806_00096	153.0	0	VRR_NUC	N/A
Pfam	UHGV-1533521_27	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1533521_27	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-1533521_29	phrog_3584	140.2	1.40004e-41	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1533521_29	1235800.C819_00515	82.4	6.89e-16	N/A	N/A
structural_annotation	UHGV-1533521_29	PF21578,NF041486	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1533521_30	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1533521_31	phrog_5110	83.5	2e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1533521_31	UniRef90_UPI00057D0A7C	114.0	5.93e-31	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1533521_31	86416.Clopa_0336	104.0	8.96e-28	N/A	N/A
Pfam	UHGV-1533521_31	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1533521_31	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1533521_32	phrog_9	284.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-1533521_32	UniRef90_A0A412UM03	986.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1533521_32	86416.Clopa_0337	619.0	0	Phage Terminase	N/A
Pfam	UHGV-1533521_32	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1533521_32	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1533521_32	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1533521_32	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1533521_33	phrog_12	102.6	3.2e-30	portal protein	head and packaging
UniRef90	UHGV-1533521_33	UniRef90_A0A412ULV9	572.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1533521_33	1415774.U728_1254	271.0	0	Phage portal protein	N/A
Pfam	UHGV-1533521_33	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1533521_33	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1533521_33	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1533521_33	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1533521_34	K01358	143.7	1.69978e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1533521_34	phrog_94	211.5	0	head maturation protease	head and packaging
UniRef90	UHGV-1533521_34	UniRef90_A0A412ULU1	394.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1533521_34	86416.Clopa_0340	172.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1533521_34	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1533521_34	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1533521_34	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1533521_35	phrog_10	112.7	4e-33	major head protein	head and packaging
UniRef90	UHGV-1533521_35	UniRef90_A0A412ULW9	571.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1533521_35	1211817.CCAT010000053_gene2132	320.0	0	Phage capsid family	N/A
Pfam	UHGV-1533521_35	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1533521_35	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1533521_35	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1533521_35	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1533521_36	phrog_749	51.0	0.000000000000023	N/A	unknown function
UniRef90	UHGV-1533521_36	UniRef90_A0A1G5CMX8	103.0	7.08e-27	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1533521_36	349161.Dred_2603	55.5	0.0000000128	N/A	N/A
PHROG	UHGV-1533521_37	phrog_19734	65.8	6.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-1533521_37	86416.Clopa_0343	55.1	0.0000000375	N/A	N/A
structural_annotation	UHGV-1533521_37	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1533521_38	698758.AXY_02180	61.2	0.000000000111	N/A	N/A
structural_annotation	UHGV-1533521_38	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-1533521_39	UniRef90_UPI000E5564A4	174.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1533521_39	1118057.CAGX01000043_gene486	66.6	0.00000000000344	Bacteriophage HK97-gp10, putative tail-component	N/A
structural_annotation	UHGV-1533521_39	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1533521_40	phrog_88	62.6	6.4e-18	major tail protein	tail
UniRef90	UHGV-1533521_40	UniRef90_A0A1G5CNS8	170.0	0	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1533521_40	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-1533521_40	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1533521_40	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1533521_41	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-1533521_43	K20282	50.8	8.9e-17	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-1533521_43	phrog_1272	261.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1533521_43	UniRef90_A0A412ULX0	823.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1533521_43	588581.Cpap_1264	268.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1533521_43	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1533521_43	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1533521_43	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1533521_44	phrog_33	61.8	1.9e-17	distal tail protein Dit	tail
UniRef90	UHGV-1533521_44	UniRef90_UPI00073F69EF	73.6	0.00000000000573	phage tail family protein	N/A
eggNOG-mapper	UHGV-1533521_44	1582149.A0A0A8WHP7_9CAUD	57.8	0.000000448	Phage tail protein	N/A
structural_annotation	UHGV-1533521_44	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1533521_45	phrog_1067	118.4	7.2e-35	minor head protein	head and packaging
UniRef90	UHGV-1533521_45	UniRef90_A0A1G5CPD2	162.0	8.84219e-43	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-1533521_45	1567011.A0A0A7RUI9_9VIRU	83.6	0.0000000000000143	N-acetylmuramoyl-L-alanine amidase activity	N/A
NCBIFam	UHGV-1533521_45	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-1533521_45	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1533521_46	PF10651,PF01095	N/A	N/A	N/A	N/A
KOfam	UHGV-1533521_47	K07273	197.3	0	acm; lysozyme	N/A
PHROG	UHGV-1533521_47	phrog_291	176.0	0	endolysin	lysis
UniRef90	UHGV-1533521_47	UniRef90_R6NXV5	389.0	0	Glycoside Hydrolase Family 25-like lysozyme/endolysin	N/A
eggNOG-mapper	UHGV-1533521_47	1120933.ATUY01000004_gene1004	168.0	0	lysozyme activity	N/A
Pfam	UHGV-1533521_47	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1533521_47	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1533521_47	PF01183,TIGR04303,COG3757,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-1533521_48	phrog_199	73.4	2.8e-21	holin	lysis
UniRef90	UHGV-1533521_48	UniRef90_UPI00164BAF69	217.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1533521_48	1160721.RBI_I01565	162.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1533521_48	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1533521_48	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1533521_48	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1533521_48	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1533521_49	K22300	59.2	9.5e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1533521_49	phrog_8	51.1	0.000000000000025	transcriptional regulator	transcription regulation
UniRef90	UHGV-1533521_49	UniRef90_A0A3C1CUP1	241.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1533521_49	588581.Cpap_0877	64.3	0.0000000000224	helix-turn-helix	N/A
Pfam	UHGV-1533521_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1533521_49	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1533521_49	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1533521	Yes	35,431	37	100	1
UHGV-1534279	No	35,651	37	100	1
UHGV-0270407	No	32,048	36	91	1
UHGV-0242019	No	27,494	37	78	1
UHGV-1484900	No	25,480	38	72	1
UHGV-1478914	No	18,310	37	52	1
UHGV-1396644	No	17,852	38	51	1