vOTU vOTU-011860

vOTU: vOTU-011860

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-011860
Number of genomes	9
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00007 → vGENUS-02070 → vSUBGEN-31572 → vOTU-011860
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0313293
Biosample ID	N/A
Genome length (bp)	55,013 bps
CheckV completeness	95.44% (High-quality)
CDS count	98
CDS density	82.53%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	581	Host agreement	98.11
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 95.44)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0313293_2	phrog_15303	86.1	3e-25	N/A	unknown function
UniRef90	UHGV-0313293_5	UniRef90_A0A1Q9JGI6	99.0	8.91e-24	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0313293_5	1033733.CAEK01000007_gene1628	103.0	2.45e-26	N/A	N/A
structural_annotation	UHGV-0313293_5	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
PHROG	UHGV-0313293_6	phrog_374	62.2	1.6e-22	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0313293_6	927704.SELR_12480	88.6	7.79e-16	N/A	N/A
Pfam	UHGV-0313293_6	PF18912	N/A	N/A	Double zinc ribbon domain	DZR_2
PHROG	UHGV-0313293_10	phrog_16490	101.4	3.1e-39	N/A	unknown function
eggNOG-mapper	UHGV-0313293_10	1408437.JNJN01000043_gene803	160.0	2.8026e-45	N/A	N/A
eggNOG-mapper	UHGV-0313293_11	1408437.JNJN01000043_gene802	117.0	3e-32	N/A	N/A
eggNOG-mapper	UHGV-0313293_12	1378168.N510_03079	94.0	1.74e-20	N/A	N/A
structural_annotation	UHGV-0313293_14	NF010188	N/A	N/A	N/A	N/A
PHROG	UHGV-0313293_16	phrog_4068	81.1	1.3e-23	N/A	unknown function
structural_annotation	UHGV-0313293_16	PF19757,NF038178	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0313293_17	PF07878	N/A	N/A	N/A	N/A
KOfam	UHGV-0313293_19	K03496	236.5	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0313293_19	phrog_164	162.5	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0313293_19	UniRef90_A0A1C6BS15	214.0	0	Sporulation initiation inhibitor protein soj	N/A
eggNOG-mapper	UHGV-0313293_19	1408423.JHYA01000021_gene392	195.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-0313293_19	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0313293_19	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0313293_19	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-0313293_20	phrog_7704	44.6	0.0000000000026	N/A	unknown function
Pfam	UHGV-0313293_20	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0313293_21	phrog_4402	106.8	1.9e-31	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0313293_21	UniRef90_A0A0H5Q331	285.0	0	Rep_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0313293_21	999413.HMPREF1094_04438	125.0	2.69e-30	Initiator Replication protein	N/A
Pfam	UHGV-0313293_21	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-0313293_21	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-0313293_21	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-0313293_21	PF01051,PF21205,NF038290,COG5527	N/A	N/A	N/A	N/A
UniRef90	UHGV-0313293_22	UniRef90_A0A2A7AM70	214.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0313293_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0313293_22	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0313293_22	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0313293_26	phrog_8	43.6	0.0000000000069	transcriptional regulator	transcription regulation
UniRef90	UHGV-0313293_26	UniRef90_A0A4Z0XXV8	75.1	0.00000000000000356	HTH-type transcriptional regulator Xre	N/A
eggNOG-mapper	UHGV-0313293_26	693746.OBV_43290	66.6	0.0000000000021	addiction module antidote protein HigA	N/A
COG	UHGV-0313293_26	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0313293_26	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0313293_27	phrog_1468	41.6	0.000000000014	transcriptional repressor	transcription regulation
UniRef90	UHGV-0313293_27	UniRef90_UPI001956DCC9	72.8	0.00000000000000125	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0313293_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0313293_27	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0313293_28	K07741	89.4	1e-25	antB; anti-repressor protein	N/A
PHROG	UHGV-0313293_28	phrog_63	188.7	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0313293_28	UniRef90_A0A844D5R9	325.0	0	Phage regulatory protein/antirepressor Ant	N/A
eggNOG-mapper	UHGV-0313293_28	1449343.JQLQ01000002_gene1368	248.0	0	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0313293_28	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0313293_28	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-0313293_28	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0313293_28	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
structural_annotation	UHGV-0313293_28	PF03374,PF09669,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0313293_29	PF10922	N/A	N/A	N/A	N/A
Pfam	UHGV-0313293_31	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0313293_31	PF13443,TIGR02684,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0313293_32	PF14143	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0313293_33	272623.L157023	48.5	0.00000763	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	N/A
COG	UHGV-0313293_33	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-0313293_33	PF04606,NF007241,COG3478	N/A	N/A	N/A	N/A
PHROG	UHGV-0313293_34	phrog_38771	64.0	1.9e-18	N/A	unknown function
PHROG	UHGV-0313293_35	phrog_155	161.4	0	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0313293_35	UniRef90_UPI00130EB09C	238.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0313293_35	748224.HMPREF9436_03360	217.0	0	ERF superfamily	N/A
Pfam	UHGV-0313293_35	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0313293_35	PF04404,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-0313293_36	K03111	115.0	1.1e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0313293_36	phrog_44	124.7	8e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0313293_36	UniRef90_A0A6N7TNV3	154.0	2.8026e-45	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0313293_36	748224.HMPREF9436_03359	149.0	2.66247e-44	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0313293_36	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0313293_36	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0313293_36	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0313293_36	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0313293_36	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0313293_37	phrog_4572	133.1	9.39999e-40	N/A	unknown function
eggNOG-mapper	UHGV-0313293_37	397288.C806_00091	96.7	2.32e-23	N/A	N/A
PHROG	UHGV-0313293_38	phrog_35094	93.3	3.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0313293_38	457424.BFAG_02409	119.0	5.41e-34	N/A	N/A
PHROG	UHGV-0313293_40	phrog_843	59.4	4.3e-17	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0313293_40	UniRef90_UPI001159D907	115.0	1.68e-29	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0313293_40	929506.CbC4_1203	109.0	1.27e-27	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-0313293_40	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0313293_45	PF03465,COG2331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0313293_47	MF_00085,NF003076,COG0231	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0313293_49	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0313293_57	phrog_478	58.9	8.8e-17	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0313293_57	UniRef90_R6R5K5	102.0	2.59e-26	Protein 64 protein	N/A
eggNOG-mapper	UHGV-0313293_57	1111121.HMPREF1247_0834	97.8	4.54e-25	N/A	N/A
PHROG	UHGV-0313293_60	phrog_599	44.9	0.0000000000026	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0313293_60	269482.Bcep1808_1151	49.7	0.00000366	N/A	N/A
Pfam	UHGV-0313293_60	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0313293_60	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0313293_60	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0313293_60	NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0313293_61	phrog_678	45.2	0.0000000000019	replication initiation O-like	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0313293_61	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0313293_61	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0313293_62	K02314	210.9	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0313293_62	phrog_19	226.9	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0313293_62	UniRef90_A0A564SBR1	433.0	0	Replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0313293_62	1203606.HMPREF1526_01325	164.0	1.84971e-43	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0313293_62	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0313293_62	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0313293_62	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0313293_63	phrog_1709	61.1	1.8e-17	N/A	unknown function
eggNOG-mapper	UHGV-0313293_63	1280686.AUKE01000002_gene1328	77.8	1.67e-17	N/A	N/A
COG	UHGV-0313293_66	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0313293_69	PF09624,PF14263,MF_00791,NF038353,TIGR02588,COG4885	N/A	N/A	N/A	N/A
KOfam	UHGV-0313293_71	K07741	44.2	0.0000000000056	antB; anti-repressor protein	N/A
PHROG	UHGV-0313293_71	phrog_63	128.2	7.7e-38	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0313293_71	UniRef90_A0A4Y5FE84	192.0	0	Antirepressor	N/A
eggNOG-mapper	UHGV-0313293_71	947981.E9LUT0_9CAUD	181.0	0	DNA binding	N/A
Pfam	UHGV-0313293_71	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0313293_71	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-0313293_71	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
structural_annotation	UHGV-0313293_71	PF09669,PF03374,TIGR02681,COG3646,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0313293_72	PF19807,NF041793,COG4877	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0313293_74	PF01402,NF041793,COG3905	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0313293_75	PF20075	N/A	N/A	N/A	N/A
KOfam	UHGV-0313293_76	K14060	145.5	4.30199e-43	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0313293_76	phrog_125	174.0	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0313293_76	UniRef90_A0A3E2UAG1	233.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0313293_76	1280664.AUIX01000018_gene2067	216.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0313293_76	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0313293_76	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0313293_76	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0313293_78	phrog_38	186.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0313293_78	UniRef90_A0A810QA10	492.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0313293_78	476272.RUMHYD_01940	339.0	0	TIGRFAM Phage	N/A
COG	UHGV-0313293_78	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0313293_78	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0313293_80	phrog_64	147.9	5.1848e-44	portal protein	head and packaging
UniRef90	UHGV-0313293_80	UniRef90_A0A371ILT4	330.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0313293_80	1121866.AUGK01000003_gene1429	280.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0313293_80	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0313293_80	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0313293_81	1064535.MELS_1945	78.2	2.45e-18	N/A	N/A
PHROG	UHGV-0313293_84	phrog_29	200.0	0	major head protein	head and packaging
UniRef90	UHGV-0313293_84	UniRef90_A0A2Z4QBB4	365.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-0313293_84	1347368.HG964404_gene4993	255.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0313293_84	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0313293_84	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0313293_85	UniRef90_R6N215	81.3	1.06e-17	Phage QLRG family putative DNA packaging	N/A
structural_annotation	UHGV-0313293_85	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0313293_86	1298920.KI911353_gene2656	54.7	0.000000111	N/A	N/A
structural_annotation	UHGV-0313293_86	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0313293_87	476272.RUMHYD_01963	60.1	0.00000000848	N/A	N/A
structural_annotation	UHGV-0313293_88	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-0313293_89	UniRef90_UPI001D06C8CA	79.7	2.69e-16	phage tail protein	N/A
eggNOG-mapper	UHGV-0313293_89	1449342.JQMR01000001_gene990	57.0	0.0000000376	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-0313293_89	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0313293_90	UniRef90_A0A496N7D3	65.9	0.000000000013	N/A	N/A
eggNOG-mapper	UHGV-0313293_90	1123263.AUKY01000015_gene1618	63.2	0.0000000000245	N/A	N/A
Pfam	UHGV-0313293_90	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0313293_90	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0313293_91	1121333.JMLH01000047_gene1011	78.2	1.38e-16	N/A	N/A
PHROG	UHGV-0313293_92	phrog_28775	169.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0313293_92	1121866.AUGK01000003_gene1437	191.0	0	phage tail tape measure protein	N/A
COG	UHGV-0313293_92	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0313293_93	phrog_1194	84.9	7.5e-25	N/A	unknown function
Pfam	UHGV-0313293_93	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0313293_93	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0313293_94	phrog_13879	190.5	0	N/A	unknown function
UniRef90	UHGV-0313293_94	UniRef90_A0A843H6J9	159.0	6.98e-38	Dockerin type I repeat-containing protein	N/A
eggNOG-mapper	UHGV-0313293_94	324057.Pjdr2_1554	150.0	2.44e-36	N/A	N/A
structural_annotation	UHGV-0313293_94	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0313293_95	phrog_18725	71.0	1.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0313293_95	1226322.HMPREF1545_00062	88.2	6.43e-20	N/A	N/A
PHROG	UHGV-0313293_96	phrog_3279	63.8	2.7e-18	tail fiber protein	tail
PHROG	UHGV-0313293_97	phrog_24267	93.1	3.5e-27	N/A	unknown function
UniRef90	UHGV-0313293_97	UniRef90_G4Q8U0	77.4	0.0000000000000208	Side tail fiber protein from lambdoid prophage Rac	N/A
eggNOG-mapper	UHGV-0313293_97	508419.F8J176_9CAUD	120.0	3.2e-29	peptidoglycan catabolic process	N/A
structural_annotation	UHGV-0313293_97	COG4675	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0313293	Yes	55,013	48	95	1
UHGV-0280007	No	55,857	48	97	1
UHGV-0156962	No	49,216	48	85	1
UHGV-1390359	No	49,216	48	85	1
UHGV-1757905	No	22,594	47	39	1
UHGV-1337953	No	21,688	48	38	1
UHGV-1565867	No	21,688	48	38	1
UHGV-1564347	No	16,388	49	28	1
UHGV-1802252	No	16,055	49	28	1