vOTU vOTU-011885

vOTU: vOTU-011885

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-011885
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00025 → vSUBFAM-01983 → vGENUS-20202 → vSUBGEN-39639 → vOTU-011885
Host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → CAG-508
Host range breadth	Family
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0290960
Biosample ID	SAMEA3888925
Genome length (bp)	37,834 bps
CheckV completeness	99.90% (High-quality)
CDS count	75
CDS density	88.54%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → CAG-508	Total connections	46	Host agreement	97.83
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → CAG-508 → CAG-492 → CAG-492 sp900553225	Total connections	6	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0290960_1	K06400	315.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0290960_1	phrog_95	318.6	0	integrase	integration and excision
UniRef90	UHGV-0290960_1	UniRef90_R7GH38	1223.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0290960_1	525254.HMPREF0072_1329	166.0	2.13978e-42	Resolvase, N terminal domain	N/A
Pfam	UHGV-0290960_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0290960_1	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0290960_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0290960_1	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0290960_4	PF02583,COG1937	N/A	N/A	N/A	N/A
Pfam	UHGV-0290960_5	PF04277	N/A	N/A	Oxaloacetate decarboxylase, gamma chain	OAD_gamma
PHROG	UHGV-0290960_8	phrog_374	52.6	0.000000000000011	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0290960_8	1437363.A0A090C6M5_9CAUD	50.8	0.00000372	HNH endonuclease	N/A
KOfam	UHGV-0290960_9	K01447	92.4	7.2e-27	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0290960_9	phrog_35436	151.6	4.2039e-45	amidase	lysis
UniRef90	UHGV-0290960_9	UniRef90_A0A352MWM3	263.0	0	Peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0290960_9	1280698.AUJS01000007_gene1059	210.0	0	Ami_2	N/A
Pfam	UHGV-0290960_9	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0290960_9	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0290960_9	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0290960_9	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0290960_10	phrog_199	93.8	1.8e-27	holin	lysis
UniRef90	UHGV-0290960_10	UniRef90_UPI00085C2E64	149.0	1.06499e-43	phage holin family protein	N/A
eggNOG-mapper	UHGV-0290960_10	411902.CLOBOL_03863	132.0	6.84e-38	COG COG4824 Phage-related holin (Lysis protein)	N/A
Pfam	UHGV-0290960_10	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0290960_10	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0290960_10	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0290960_10	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0290960_13	phrog_13879	70.5	1.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0290960_13	1122919.KB905559_gene1344	64.7	0.0000000483	N/A	N/A
PHROG	UHGV-0290960_14	phrog_1194	62.6	6.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0290960_14	1229517.AMFD01000023_gene1305	54.7	0.0000000987	N/A	N/A
structural_annotation	UHGV-0290960_14	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0290960_15	phrog_1535	109.4	2.6e-32	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0290960_15	1280692.AUJL01000027_gene2150	68.9	0.000000000266	phage tail tape measure protein	N/A
COG	UHGV-0290960_15	COG1511	N/A	N/A	N/A	N/A
KOfam	UHGV-0290960_16	K10421	40.0	0.000000000022	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0290960_16	phrog_1535	91.7	6.6e-28	tail length tape measure protein	tail
UniRef90	UHGV-0290960_16	UniRef90_R6H5W8	368.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0290960_16	691966.D4P728_9CAUD	62.4	0.000000445	peptidoglycan catabolic process	N/A
PHROG	UHGV-0290960_17	phrog_10292	56.5	3.1e-16	N/A	unknown function
UniRef90	UHGV-0290960_17	UniRef90_A0A6N9PTJ0	146.0	8.84219e-43	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0290960_17	665956.HMPREF1032_00562	135.0	3.36e-39	TM2 domain	N/A
Pfam	UHGV-0290960_17	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0290960_17	COG2314	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0290960_17	PF05154,PF12773,MF_00788,NF003161	N/A	N/A	N/A	N/A
PHROG	UHGV-0290960_18	phrog_806	103.5	2.4e-30	N/A	unknown function
UniRef90	UHGV-0290960_18	UniRef90_A0A1L8ZRA7	130.0	3.21e-35	N/A	N/A
eggNOG-mapper	UHGV-0290960_18	1510440.A0A068ETV6_9CAUD	104.0	5.84e-26	N/A	N/A
Pfam	UHGV-0290960_18	PF11611	N/A	N/A	N/A	DUF4352
structural_annotation	UHGV-0290960_18	PF11611,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0290960_20	PF12363	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0290960_21	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0290960_22	665956.HMPREF1032_03624	52.8	0.00000061	N/A	N/A
structural_annotation	UHGV-0290960_22	PF05657	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0290960_23	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0290960_24	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0290960_25	445972.ANACOL_01847	50.1	0.00000168	N/A	N/A
structural_annotation	UHGV-0290960_25	PF05135,TIGR01560	N/A	N/A	N/A	N/A
UniRef90	UHGV-0290960_26	UniRef90_R6HF87	90.5	5.2e-23	HeH domain-containing protein	N/A
eggNOG-mapper	UHGV-0290960_26	1217703.F904_00188	51.2	0.000000123	N/A	N/A
Pfam	UHGV-0290960_26	PF12949	N/A	N/A	HeH/LEM domain	HeH
PHROG	UHGV-0290960_27	phrog_422	217.7	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0290960_27	1123263.AUKY01000051_gene1080	247.0	0	N/A	N/A
structural_annotation	UHGV-0290960_27	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0290960_28	phrog_172	73.8	3.4e-21	head scaffolding protein	head and packaging
UniRef90	UHGV-0290960_28	UniRef90_R6HDW5	338.0	0	Phage scaffold protein	N/A
eggNOG-mapper	UHGV-0290960_28	1499683.CCFF01000014_gene3909	67.8	0.0000000000339	N/A	N/A
Pfam	UHGV-0290960_28	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0290960_28	PF14265	N/A	N/A	N/A	N/A
UniRef90	UHGV-0290960_31	UniRef90_A0A6M0SIM4	115.0	2.72e-25	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0290960_31	1507.HMPREF0262_01176	107.0	4.1e-23	Phage minor capsid protein 2	N/A
COG	UHGV-0290960_31	COG2369	N/A	N/A	N/A	N/A
UniRef90	UHGV-0290960_32	UniRef90_R7IWF4	216.0	0	SPP1 gp7 family phage putative head morphogenesis protein	N/A
PHROG	UHGV-0290960_33	phrog_64	185.0	0	portal protein	head and packaging
UniRef90	UHGV-0290960_33	UniRef90_R6I230	904.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-0290960_33	665956.HMPREF1032_03614	245.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0290960_33	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0290960_33	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0290960_34	K06909	222.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0290960_34	phrog_5653	200.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0290960_34	UniRef90_R6HF73	474.0	0	Phage terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-0290960_34	1408823.AXUS01000024_gene2712	353.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0290960_34	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
COG	UHGV-0290960_34	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0290960_34	PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0290960_35	K06909	160.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0290960_35	phrog_3717	142.9	1.99965e-42	terminase large subunit	head and packaging
UniRef90	UHGV-0290960_35	UniRef90_R6H5U4	335.0	0	Phage terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-0290960_35	861454.HMPREF9099_00528	236.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0290960_35	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0290960_35	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0290960_35	PF04466,MF_04145,NF002340,COG5410	N/A	N/A	N/A	N/A
KOfam	UHGV-0290960_36	K07474	98.5	1.5e-28	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0290960_36	phrog_51	120.8	9.7e-36	terminase small subunit	head and packaging
UniRef90	UHGV-0290960_36	UniRef90_R6HDV5	154.0	1.4013e-45	Prophage LambdaCh01 terminase small subunit	N/A
eggNOG-mapper	UHGV-0290960_36	1280689.AUJC01000003_gene961	143.0	3.12069e-42	Terminase small subunit	N/A
Pfam	UHGV-0290960_36	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0290960_36	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0290960_36	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0290960_38	phrog_1233	61.3	1.6e-17	N/A	unknown function
UniRef90	UHGV-0290960_38	UniRef90_R7IWF8	211.0	0	Peptidase_M78 domain-containing protein	N/A
Pfam	UHGV-0290960_38	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-0290960_38	PF13058	N/A	N/A	N/A	N/A
PHROG	UHGV-0290960_41	phrog_36	50.8	0.00000000000003	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0290960_41	PF15456,NF008895,COG5034	N/A	N/A	N/A	N/A
PHROG	UHGV-0290960_43	phrog_478	126.4	1.2e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0290960_43	UniRef90_R6R5K5	144.0	6.31005e-42	Protein 64 protein	N/A
eggNOG-mapper	UHGV-0290960_43	1111121.HMPREF1247_0834	148.0	3.64338e-44	N/A	N/A
structural_annotation	UHGV-0290960_54	PF09871,TIGR00739	N/A	N/A	N/A	N/A
KOfam	UHGV-0290960_56	K01160	41.7	0.000000000031	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0290960_56	phrog_34	52.7	0.0000000000000097	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0290960_56	UniRef90_A0A6B9SRR2	127.0	4.17e-35	Endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0290960_56	525919.Apre_0813	106.0	4.65e-28	Endodeoxyribonuclease RusA	N/A
COG	UHGV-0290960_56	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0290960_56	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0290960_58	phrog_4973	55.5	9.6e-16	N/A	unknown function
UniRef90	UHGV-0290960_58	UniRef90_A0A843HM15	75.9	2.71e-16	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0290960_58	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0290960_58	PF14090,NF040939,COG5625	N/A	N/A	N/A	N/A
PHROG	UHGV-0290960_59	phrog_9804	96.5	2.9e-28	N/A	unknown function
UniRef90	UHGV-0290960_59	UniRef90_UPI00058D49CF	181.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-0290960_59	1499683.CCFF01000013_gene503	180.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0290960_59	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0290960_59	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0290960_60	phrog_2149	97.9	1.3e-28	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0290960_60	UniRef90_A0A174WT25	73.2	0.0000000000167	Replication initiator A domain-containing protein	N/A
eggNOG-mapper	UHGV-0290960_60	632292.Calhy_0413	105.0	9.54e-23	N/A	N/A
structural_annotation	UHGV-0290960_60	PF09524,PF01475,TIGR02220,NF041413,COG0735	N/A	N/A	N/A	N/A
PHROG	UHGV-0290960_61	phrog_7566	95.2	4e-28	N/A	unknown function
eggNOG-mapper	UHGV-0290960_61	1235792.C808_03078	58.2	0.00000000147	N/A	N/A
PHROG	UHGV-0290960_62	phrog_1389	54.3	0.0000000000000023	N/A	unknown function
eggNOG-mapper	UHGV-0290960_62	1347392.CCEZ01000060_gene3269	50.1	0.00000242	N/A	N/A
structural_annotation	UHGV-0290960_62	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
KOfam	UHGV-0290960_63	K03111	147.0	1.90577e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0290960_63	phrog_44	145.7	2.60642e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0290960_63	UniRef90_R5Z2P9	206.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0290960_63	1291050.JAGE01000001_gene1719	169.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0290960_63	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0290960_63	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0290960_63	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0290960_63	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0290960_63	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0290960_64	phrog_124	97.0	2.2e-28	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0290960_64	UniRef90_A0A7X7HFU7	293.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0290960_64	1329516.JPST01000033_gene2854	80.9	0.00000000000000423	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	N/A
Pfam	UHGV-0290960_64	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0290960_64	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0290960_64	PF13479,MF_00348,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0290960_69	phrog_2211	64.2	2.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0290960_69	935948.KE386495_gene1208	83.6	2.33e-19	N/A	N/A
UniRef90	UHGV-0290960_72	UniRef90_R5YJV7	91.3	1.91e-22	Cro-like repressor	N/A
Pfam	UHGV-0290960_72	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
KOfam	UHGV-0290960_73	K01356	149.0	4.76441e-44	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0290960_73	phrog_4	128.0	9e-38	transcriptional repressor	transcription regulation
UniRef90	UHGV-0290960_73	UniRef90_R7F6V6	235.0	0	LexA repressor	N/A
eggNOG-mapper	UHGV-0290960_73	1203606.HMPREF1526_00998	135.0	7.37e-37	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0290960_73	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0290960_73	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0290960_73	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0290960_73	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0290960	Yes	37,834	28	100	1
UHGV-0118713	No	36,414	29	97	1
UHGV-0076827	No	10,711	30	29	1
UHGV-1703308	No	10,711	30	29	1