vOTU vOTU-011958

vOTU: vOTU-011958

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-011958
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00124 → vGENUS-00131 → vSUBGEN-20392 → vOTU-011958
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0021916
Biosample ID	SAMEA4766193
Genome length (bp)	39,951 bps
CheckV completeness	98.29% (High-quality)
CDS count	67
CDS density	93.09%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	420	Host agreement	98.81
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.29)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0021916_1	phrog_119	57.6	1.8e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021916_1	UniRef90_A0A2A7B6I3	229.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0021916_1	768710.DesyoDRAFT_1275	105.0	8.16e-28	HNH nucleases	N/A
Pfam	UHGV-0021916_1	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0021916_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0021916_4	phrog_3136	135.7	1.50001e-40	N/A	unknown function
UniRef90	UHGV-0021916_4	UniRef90_UPI001C02A61B	191.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0021916_4	97139.C824_00742	73.6	0.0000000000000428	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0021916_4	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0021916_4	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021916_8	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-0021916_9	K03497	89.9	4.6e-26	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0021916_9	phrog_4715	113.9	1.3e-33	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021916_9	UniRef90_A0A2A7AMC5	303.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0021916_9	411471.SUBVAR_05842	181.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0021916_9	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0021916_9	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0021916_9	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021916_10	PF20331,COG5264	N/A	N/A	N/A	N/A
KOfam	UHGV-0021916_11	K03496	205.9	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0021916_11	phrog_164	154.2	1.4013e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021916_11	UniRef90_A0A2A7B6H3	349.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0021916_11	411471.SUBVAR_05839	226.0	0	AAA domain	N/A
Pfam	UHGV-0021916_11	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0021916_11	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0021916_11	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-0021916_12	phrog_6969	51.2	0.000000000000014	N/A	unknown function
UniRef90	UHGV-0021916_12	UniRef90_A0A1G4WF63	66.6	0.00000000514	Replication initiator protein A (RepA) N-terminus	N/A
eggNOG-mapper	UHGV-0021916_12	748224.HMPREF9436_00735	159.0	4.34403e-44	N/A	N/A
Pfam	UHGV-0021916_12	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-0021916_12	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0021916_12	PF19481,PF01978,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0021916_13	K03111	140.4	1.79997e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0021916_13	phrog_44	147.7	5.60519e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021916_13	UniRef90_A0A2A7ALU9	202.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0021916_13	748224.HMPREF9436_00638	211.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0021916_13	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0021916_13	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0021916_13	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0021916_13	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0021916_13	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0021916_14	phrog_7566	84.0	1.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0021916_14	411471.SUBVAR_05830	106.0	1.59e-28	N/A	N/A
PHROG	UHGV-0021916_16	phrog_72	48.6	0.00000000000014	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0021916_16	411471.SUBVAR_05829	137.0	1.47e-38	N/A	N/A
Pfam	UHGV-0021916_16	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-0021916_16	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0021916_17	phrog_14970	47.5	0.00000000000033	N/A	unknown function
COG	UHGV-0021916_17	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0021916_17	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021916_20	PF10346,MF_00337,NF010671	N/A	N/A	N/A	N/A
UniRef90	UHGV-0021916_28	UniRef90_UPI000BEF0F65	70.9	0.00000000000000636	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0021916_28	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0021916_29	K22300	40.8	0.000000000043	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0021916_29	phrog_8	44.1	0.0000000000042	transcriptional regulator	transcription regulation
UniRef90	UHGV-0021916_29	UniRef90_UPI001E54DE4F	82.0	3.49e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0021916_29	1378168.N510_01712	70.9	0.000000000000232	N/A	N/A
Pfam	UHGV-0021916_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0021916_29	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0021916_31	394503.Ccel_2974	63.9	0.0000000075	N/A	N/A
structural_annotation	UHGV-0021916_31	PF06776,COG5342	N/A	N/A	N/A	N/A
KOfam	UHGV-0021916_32	K02342	77.5	1.5e-22	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0021916_32	phrog_192	89.4	3.3e-26	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021916_32	UniRef90_A0A7C6LHL4	82.0	0.0000000000000816	Transposase	N/A
eggNOG-mapper	UHGV-0021916_32	665956.HMPREF1032_02791	123.0	1.99e-28	N/A	N/A
PADLOC	UHGV-0021916_32	cd06127	70.0	6.7e-20	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0021916_32	PF00929	N/A	N/A	Exonuclease	RNase_T
COG	UHGV-0021916_32	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0021916_32	PF00929,PF00533,MF_00157,NF004844,COG0847	N/A	N/A	N/A	N/A
PHROG	UHGV-0021916_35	phrog_1373	44.1	0.0000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-0021916_35	UniRef90_A0A2A7B6N3	177.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0021916_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0021916_35	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0021916_35	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0021916_36	K14059	178.1	0	int; integrase	N/A
PHROG	UHGV-0021916_36	phrog_1	161.4	0	integrase	integration and excision
UniRef90	UHGV-0021916_36	UniRef90_A0A367GI93	221.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0021916_36	1507.HMPREF0262_00307	162.0	1.30321e-43	Phage integrase family	N/A
Pfam	UHGV-0021916_36	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0021916_36	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0021916_36	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0021916_37	1408437.JNJN01000043_gene801	98.2	1.15e-22	N/A	N/A
eggNOG-mapper	UHGV-0021916_38	1408437.JNJN01000043_gene802	123.0	1.11e-34	N/A	N/A
PHROG	UHGV-0021916_39	phrog_16490	104.9	9.1e-39	N/A	unknown function
eggNOG-mapper	UHGV-0021916_39	1408437.JNJN01000043_gene803	119.0	2.33e-29	N/A	N/A
PHROG	UHGV-0021916_41	phrog_21718	42.4	0.00000000001	N/A	unknown function
eggNOG-mapper	UHGV-0021916_44	1235798.C817_04600	56.6	0.00000000646	N/A	N/A
structural_annotation	UHGV-0021916_44	PF13560,NF040522	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021916_45	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0021916_48	phrog_15303	82.7	3.2e-24	N/A	unknown function
PHROG	UHGV-0021916_49	phrog_1863	77.6	8e-23	N/A	unknown function
eggNOG-mapper	UHGV-0021916_49	718252.FP2_04900	144.0	3.64338e-44	N/A	N/A
KOfam	UHGV-0021916_50	K07273	180.6	0	acm; lysozyme	N/A
PHROG	UHGV-0021916_50	phrog_291	143.3	1.90016e-42	endolysin	lysis
UniRef90	UHGV-0021916_50	UniRef90_UPI001D0EE7D8	275.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0021916_50	748224.HMPREF9436_00154	270.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0021916_50	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0021916_50	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0021916_50	PF01183,COG3757	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021916_51	PF10651,PF01095	N/A	N/A	N/A	N/A
PHROG	UHGV-0021916_53	phrog_1067	170.2	0	minor head protein	head and packaging
UniRef90	UHGV-0021916_53	UniRef90_A0A2A7AM44	701.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0021916_53	1123263.AUKY01000068_gene489	188.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0021916_53	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0021916_53	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0021916_53	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0021916_53	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0021916_54	phrog_33	77.4	2.8e-22	distal tail protein Dit	tail
UniRef90	UHGV-0021916_54	UniRef90_A0A173Z1X4	144.0	4.9e-39	Phage-related protein	N/A
eggNOG-mapper	UHGV-0021916_54	1487921.DP68_11370	95.1	6.57e-21	tail component	N/A
NCBIFam	UHGV-0021916_54	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0021916_54	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0021916_54	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0021916_55	phrog_9959	92.9	1.9e-27	tail length tape measure protein	tail
UniRef90	UHGV-0021916_55	UniRef90_A0A2A7ALS3	756.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0021916_55	1224164.B843_03450	180.0	1.47136e-43	Tail protein	N/A
Pfam	UHGV-0021916_55	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0021916_55	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0021916_55	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0021916_55	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0021916_58	phrog_88	93.9	1.6e-27	major tail protein	tail
UniRef90	UHGV-0021916_58	UniRef90_G9YSC5	110.0	1.14e-26	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0021916_58	349161.Dred_2600	65.5	0.000000000387	N/A	N/A
NCBIFam	UHGV-0021916_58	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0021916_58	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0021916_59	phrog_5	47.8	0.00000000000012	tail completion or Neck1 protein	connector
UniRef90	UHGV-0021916_59	UniRef90_A0A1C6FG30	115.0	9.71e-30	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0021916_59	908340.HMPREF9406_2573	108.0	7.04e-28	N/A	N/A
structural_annotation	UHGV-0021916_59	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0021916_60	999413.HMPREF1094_02005	70.5	0.000000000000025	N/A	N/A
structural_annotation	UHGV-0021916_60	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0021916_61	phrog_19734	93.5	1.9e-27	N/A	unknown function
UniRef90	UHGV-0021916_61	UniRef90_A0A0D8I708	79.3	1.88e-16	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0021916_61	349161.Dred_2602	73.6	0.00000000000000547	N/A	N/A
structural_annotation	UHGV-0021916_61	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0021916_62	phrog_749	54.8	0.0000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0021916_62	1211817.CCAT010000053_gene2133	65.9	0.00000000000154	N/A	N/A
PHROG	UHGV-0021916_63	phrog_10	158.1	0	major head protein	head and packaging
UniRef90	UHGV-0021916_63	UniRef90_A0A2A7B712	622.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0021916_63	1235792.C808_00086	442.0	0	Phage capsid family	N/A
Pfam	UHGV-0021916_63	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0021916_63	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0021916_63	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0021916_63	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0021916_63	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0021916_64	K01358	89.8	3.7e-26	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0021916_64	phrog_94	133.6	2e-39	head maturation protease	head and packaging
UniRef90	UHGV-0021916_64	UniRef90_UPI001C10F40E	160.0	4.2039e-45	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0021916_64	1121866.AUGK01000006_gene879	150.0	5.13996e-42	Clp protease	N/A
Pfam	UHGV-0021916_64	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0021916_64	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0021916_64	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0021916_65	phrog_12	100.5	1.3e-29	portal protein	head and packaging
UniRef90	UHGV-0021916_65	UniRef90_A0A2A7B6S8	466.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0021916_65	349161.Dred_2606	250.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0021916_65	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0021916_65	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0021916_65	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0021916_65	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0021916_66	phrog_9	240.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0021916_66	UniRef90_A0A2A7ALT4	1056.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0021916_66	610130.Closa_0741	635.0	0	Phage Terminase	N/A
Pfam	UHGV-0021916_66	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0021916_66	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0021916_66	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0021916_67	phrog_13845	56.0	4.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0021916_67	1399942.U3PDR2_9CAUD	66.6	0.0000000000016	N/A	N/A
structural_annotation	UHGV-0021916_67	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0021916	Yes	39,951	52	98	1
UHGV-0022357	No	39,730	52	98	1
UHGV-0021644	No	21,558	52	53	1