vOTU vOTU-012017

vOTU: vOTU-012017

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-012017
Number of genomes	10
Taxonomy (ICTV)	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-00212 → vGENUS-00944 → vSUBGEN-01829 → vOTU-012017
Host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1461426
Biosample ID	SAMEA3882546
Genome length (bp)	35,489 bps
CheckV completeness	99.90% (High-quality)
CDS count	59
CDS density	93.64%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	Total connections	67	Host agreement	82.09
PHIST-predicted host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	Total connections	97	Host agreement	76.29

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1461426_2	phrog_15768	117.6	1.3e-34	N/A	unknown function
eggNOG-mapper	UHGV-1461426_2	742722.HMPREF9463_00205	107.0	2.71e-26	N/A	N/A
structural_annotation	UHGV-1461426_2	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1461426_3	K02315	123.2	2.5e-36	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1461426_3	phrog_50	102.2	4.7e-30	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1461426_3	UniRef90_UPI001107227E	435.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1461426_3	742722.HMPREF9463_00206	326.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-1461426_3	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1461426_3	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1461426_3	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1461426_10	phrog_355	59.4	4.9e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1461426_10	UniRef90_UPI001E585BFA	241.0	0	N/A	N/A
eggNOG-mapper	UHGV-1461426_10	97138.C820_00250	125.0	1.16e-35	N/A	N/A
Pfam	UHGV-1461426_10	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-1461426_10	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-1461426_12	phrog_3392	138.6	4.39994e-41	N/A	unknown function
eggNOG-mapper	UHGV-1461426_12	1217710.F969_00044	122.0	3.62e-31	N/A	N/A
structural_annotation	UHGV-1461426_18	PF01503,NF001613,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-1461426_21	phrog_421	94.3	1.2e-27	N/A	unknown function
UniRef90	UHGV-1461426_21	UniRef90_UPI00189FBB65	427.0	0	N/A	N/A
eggNOG-mapper	UHGV-1461426_21	742722.HMPREF9463_00227	299.0	0	N/A	N/A
Pfam	UHGV-1461426_21	PF10979	N/A	N/A	N/A	DUF2786
structural_annotation	UHGV-1461426_21	PF10979	N/A	N/A	N/A	N/A
UniRef90	UHGV-1461426_22	UniRef90_UPI00189E8CAE	234.0	0	N/A	N/A
eggNOG-mapper	UHGV-1461426_22	525898.Sdel_1116	83.6	1.59e-19	Single-stranded DNA endonuclease	N/A
Pfam	UHGV-1461426_22	PF11171	N/A	N/A	N/A	DUF2958
COG	UHGV-1461426_22	COG3616	N/A	N/A	D-serine deaminase, pyridoxal phosphate-dependent	N/A
structural_annotation	UHGV-1461426_22	PF11171	N/A	N/A	N/A	N/A
UniRef90	UHGV-1461426_24	UniRef90_UPI00189F8E11	164.0	0	helix-turn-helix transcriptional regulator	N/A
PHROG	UHGV-1461426_25	phrog_2302	92.0	4.7e-27	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1461426_25	UniRef90_UPI00110709E5	503.0	0	phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-1461426_25	742722.HMPREF9463_00233	465.0	0	sulfate reduction	N/A
COG	UHGV-1461426_25	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1461426_25	PF01507,MF_00063,TIGR02057,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-1461426_27	UniRef90_D2QB73	50.4	0.00000548	Bacteriophage protein gp1	N/A
eggNOG-mapper	UHGV-1461426_27	1348663.KCH_49450	64.7	0.00000000000574	N/A	N/A
PHROG	UHGV-1461426_28	phrog_2412	49.3	0.000000000000087	N/A	unknown function
PHROG	UHGV-1461426_29	phrog_38	154.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1461426_29	UniRef90_UPI00166CA12B	451.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1461426_29	742722.HMPREF9463_00238	872.0	0	N/A	N/A
structural_annotation	UHGV-1461426_29	PF17289,PF05876,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-1461426_30	phrog_64	349.0	0	portal protein	head and packaging
UniRef90	UHGV-1461426_30	UniRef90_A0A096LKL8	914.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1461426_30	742722.HMPREF9463_00239	914.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-1461426_30	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1461426_30	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1461426_30	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1461426_31	PF06347,PF12949,NF040675,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-1461426_32	phrog_115	207.4	0	minor head protein	head and packaging
UniRef90	UHGV-1461426_32	UniRef90_A0A096KKG4	978.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1461426_32	742722.HMPREF9463_00241	978.0	0	domain, Protein	N/A
Pfam	UHGV-1461426_32	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1461426_32	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1461426_32	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1461426_32	PF04233,TIGR01641	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1461426_34	PF00085,MF_01319,TIGR01068,COG0526	N/A	N/A	N/A	N/A
PHROG	UHGV-1461426_35	phrog_172	113.4	2e-33	head scaffolding protein	head and packaging
UniRef90	UHGV-1461426_35	UniRef90_UPI00189A45A9	265.0	0	N/A	N/A
eggNOG-mapper	UHGV-1461426_35	742722.HMPREF9463_00244	348.0	0	N/A	N/A
Pfam	UHGV-1461426_35	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1461426_35	PF14265	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1461426_36	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-1461426_37	phrog_29	185.9	0	major head protein	head and packaging
UniRef90	UHGV-1461426_37	UniRef90_UPI00189BFF8B	615.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-1461426_37	742722.HMPREF9463_00246	718.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1461426_37	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1461426_37	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1461426_38	phrog_132	42.1	0.000000000013	head-tail adaptor	connector
UniRef90	UHGV-1461426_38	UniRef90_X8HX34	89.0	1.3e-20	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1461426_38	742722.HMPREF9463_00247	211.0	0	N/A	N/A
structural_annotation	UHGV-1461426_38	PF05135	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1461426_39	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1461426_40	phrog_5	42.0	0.000000000023	tail completion or Neck1 protein	connector
UniRef90	UHGV-1461426_40	UniRef90_UPI00189A8F38	211.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1461426_40	742722.HMPREF9463_00249	247.0	0	N/A	N/A
structural_annotation	UHGV-1461426_40	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1461426_41	phrog_176	49.9	0.000000000000054	tail terminator	connector
UniRef90	UHGV-1461426_41	UniRef90_UPI00189AA88D	251.0	0	N/A	N/A
eggNOG-mapper	UHGV-1461426_41	1347392.CCEZ01000005_gene1240	107.0	5.08e-28	N/A	N/A
Pfam	UHGV-1461426_41	PF16807	N/A	N/A	N/A	DUF5072
structural_annotation	UHGV-1461426_41	PF16807,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1461426_42	phrog_1407	93.4	1.7e-27	major tail protein	tail
UniRef90	UHGV-1461426_42	UniRef90_UPI00189A83F5	294.0	0	phage major tail protein, TP901-1 family	N/A
eggNOG-mapper	UHGV-1461426_42	742722.HMPREF9463_00251	355.0	0	Phage tail tube protein	N/A
Pfam	UHGV-1461426_42	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
NCBIFam	UHGV-1461426_42	TIGR02126.1	N/A	N/A	phage major tail protein, TP901-1 family	N/A
COG	UHGV-1461426_42	COG5437	N/A	N/A	Phage tail protein, TP901-1 family	N/A
structural_annotation	UHGV-1461426_42	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1461426_43	1235792.C808_05346	61.2	0.000000000342	N/A	N/A
PHROG	UHGV-1461426_45	phrog_58	318.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1461426_45	UniRef90_A0A096LKM1	913.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1461426_45	742722.HMPREF9463_00254	913.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-1461426_45	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1461426_45	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1461426_45	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1461426_45	PF20155,MF_04138,TIGR01760,COG3941	N/A	N/A	N/A	N/A
KOfam	UHGV-1461426_46	K06882	48.1	0.000000000000049	N/A	N/A
UniRef90	UHGV-1461426_46	UniRef90_A0A096KKE1	1540.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-1461426_46	742722.HMPREF9463_00255	1540.0	0	Fibronectin type 3 domain	N/A
COG	UHGV-1461426_46	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-1461426_46	PF00041,PF02010,PF05939,MF_04116,NF010681,COG3401,COG2372,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1461426_47	phrog_1887	46.4	0.00000000000044	tail protein	tail
eggNOG-mapper	UHGV-1461426_47	742722.HMPREF9463_00256	701.0	0	N/A	N/A
structural_annotation	UHGV-1461426_47	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1461426_48	PF01455,MF_00075,NF003076,COG0361	N/A	N/A	N/A	N/A
PHROG	UHGV-1461426_49	phrog_17134	40.2	0.000000000018	N/A	unknown function
eggNOG-mapper	UHGV-1461426_49	742722.HMPREF9463_00258	271.0	0	N/A	N/A
UniRef90	UHGV-1461426_50	UniRef90_A0A096LKM2	563.0	0	N/A	N/A
eggNOG-mapper	UHGV-1461426_50	742722.HMPREF9463_00259	563.0	0	N/A	N/A
Pfam	UHGV-1461426_50	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1461426_50	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1461426_51	742722.HMPREF9463_00260	288.0	0	N/A	N/A
structural_annotation	UHGV-1461426_51	PF05635,TIGR02436	N/A	N/A	N/A	N/A
UniRef90	UHGV-1461426_52	UniRef90_B6GDG8	57.8	0.000000000247	N/A	N/A
eggNOG-mapper	UHGV-1461426_52	1121866.AUGK01000003_gene1446	49.3	0.00000195	N/A	N/A
KOfam	UHGV-1461426_53	K00986	89.5	3.9e-26	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-1461426_53	phrog_1423	171.9	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1461426_53	UniRef90_A0A096LE05	730.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-1461426_53	742722.HMPREF9463_00262	730.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-1461426_53	icity0040	59.7	6.8e-17	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-1461426_53	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-1461426_53	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-1461426_53	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1461426_54	742722.HMPREF9463_00263	211.0	0	N/A	N/A
PHROG	UHGV-1461426_55	phrog_134	58.5	7.1e-17	N/A	unknown function
UniRef90	UHGV-1461426_55	UniRef90_A0A6N9JIP8	100.0	6.81e-27	XkdX family protein	N/A
eggNOG-mapper	UHGV-1461426_55	1298920.KI911353_gene4834	55.5	0.000000000671	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-1461426_55	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-1461426_55	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-1461426_55	PF09693,TIGR01669	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1461426_57	742722.HMPREF9463_00266	191.0	0	N/A	N/A
structural_annotation	UHGV-1461426_57	PF06946	N/A	N/A	N/A	N/A
UniRef90	UHGV-1461426_58	UniRef90_B6GDG3	167.0	0	Peptidase_C39_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1461426_58	622312.ROSEINA2194_00368	54.7	0.00000466	Papain-like cysteine protease AvrRpt2	N/A
Pfam	UHGV-1461426_58	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
COG	UHGV-1461426_58	COG0768	N/A	N/A	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	N/A
structural_annotation	UHGV-1461426_58	PF03412,NF033920,COG4990	N/A	N/A	N/A	N/A
KOfam	UHGV-1461426_59	K07273	153.6	1.4013e-45	acm; lysozyme	N/A
PHROG	UHGV-1461426_59	phrog_291	173.9	0	endolysin	lysis
UniRef90	UHGV-1461426_59	UniRef90_A0A096KHY0	580.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-1461426_59	742722.HMPREF9463_00268	580.0	0	CW_7 repeat	N/A
Pfam	UHGV-1461426_59	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1461426_59	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-1461426_59	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1461426_59	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1461426_59	PF01183,PF01476,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1461426	Yes	35,489	62	100	1
UHGV-0346256	No	41,835	62	100	1
UHGV-0073899	No	28,035	62	81	1
UHGV-1532236	No	28,025	62	77	1
UHGV-1459830	No	24,060	62	67	1
UHGV-1682905	No	17,607	62	50	1
UHGV-1681334	No	17,562	62	50	1
UHGV-1676398	No	17,477	62	49	1
UHGV-1586107	No	16,845	63	47	1
UHGV-1825313	No	15,956	62	46	1