vOTU vOTU-012669

vOTU: vOTU-012669

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-012669
Number of genomes	19
Taxonomy (ICTV)	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A sp900551335
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00831 → vGENUS-18047 → vSUBGEN-33960 → vOTU-012669
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0032313
Biosample ID	N/A
Genome length (bp)	54,837 bps
CheckV completeness	93.63% (High-quality)
CDS count	75
CDS density	92.60%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A	Total connections	75	Host agreement	98.67
PHIST-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A sp900551335	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 93.63)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0032313_1	K06400	387.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0032313_1	phrog_95	370.6	0	integrase	integration and excision
UniRef90	UHGV-0032313_1	UniRef90_E8LBZ4	419.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0032313_1	626939.HMPREF9443_00357	419.0	0	overlaps another CDS with the same product name	N/A
Pfam	UHGV-0032313_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0032313_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0032313_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0032313_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0032313_1	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0032313_5	K22300	62.7	8.5e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0032313_5	phrog_8	75.6	8.8e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0032313_5	UniRef90_A0A316PGS7	80.5	4.28e-17	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0032313_5	697281.Mahau_0099	77.4	1.48e-16	PFAM Helix-turn-helix	N/A
Pfam	UHGV-0032313_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0032313_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0032313_6	K22300	63.8	3.5e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0032313_6	phrog_8	51.2	0.000000000000029	transcriptional regulator	transcription regulation
UniRef90	UHGV-0032313_6	UniRef90_UPI000F0D19B9	67.8	0.000000000000135	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0032313_6	742738.HMPREF9460_04041	59.7	0.0000000000322	sequence-specific DNA binding	N/A
Pfam	UHGV-0032313_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0032313_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0032313_6	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0032313_9	K22299	45.7	0.0000000000014	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-0032313_9	UniRef90_UPI0010328302	59.7	0.000000000133	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0032313_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0032313_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0032313_9	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-0032313_14	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0032313_14	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0032313_14	MF_02014,NF010723	N/A	N/A	N/A	N/A
PHROG	UHGV-0032313_16	phrog_2324	165.2	0	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032313_16	UniRef90_A0A1H6VD67	151.0	2.66947e-42	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0032313_16	1207076.ALAT01000201_gene1614	134.0	2.7e-36	ERF superfamily	N/A
Pfam	UHGV-0032313_16	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0032313_16	PF04404,TIGR00607	N/A	N/A	N/A	N/A
PHROG	UHGV-0032313_17	phrog_7566	91.2	6.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-0032313_17	1304866.K413DRAFT_3017	61.2	0.0000000000555	N/A	N/A
PHROG	UHGV-0032313_18	phrog_72	56.9	3.2e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0032313_18	445972.ANACOL_01825	112.0	7.62e-29	N/A	N/A
structural_annotation	UHGV-0032313_18	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0032313_19	phrog_270	108.3	8e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032313_19	UniRef90_UPI0006877B23	109.0	3.64e-25	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0032313_19	748224.HMPREF9436_02599	106.0	4.47e-24	N/A	N/A
Pfam	UHGV-0032313_19	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0032313_19	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0032313_19	PF02295,MF_01819,TIGR04176,COG3355	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032313_20	UniRef90_A0A316S7J6	95.1	3.91e-21	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0032313_20	1280706.AUJE01000046_gene1152	63.5	0.000000000674	N/A	N/A
KOfam	UHGV-0032313_22	K00558	260.2	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0032313_22	phrog_116	297.5	0	DNA methyltransferase	other
UniRef90	UHGV-0032313_22	UniRef90_A0A1Q6RAH0	649.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0032313_22	411460.RUMTOR_00462	368.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0032313_22	MTase_II_00058	282.6	0	Type II methyltransferase	RM
Pfam	UHGV-0032313_22	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0032313_22	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0032313_22	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0032313_22	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0032313_26	phrog_10714	74.6	1.1e-21	N/A	unknown function
structural_annotation	UHGV-0032313_26	PF21173	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032313_27	PF02185	N/A	N/A	N/A	N/A
PHROG	UHGV-0032313_30	phrog_31107	40.3	0.000000000039	N/A	unknown function
Pfam	UHGV-0032313_31	PF06827	N/A	N/A	Zinc finger found in FPG and IleRS	zf-FPG_IleRS
KOfam	UHGV-0032313_36	K03111	149.1	4.06377e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0032313_36	phrog_44	149.8	1.26117e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032313_36	UniRef90_E8LE33	201.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0032313_36	626939.HMPREF9443_01150	201.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0032313_36	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0032313_36	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0032313_36	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0032313_36	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0032313_36	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032313_37	401526.TcarDRAFT_1279	75.1	0.00000000000000451	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-0032313_37	PF05263,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0032313_38	phrog_2329	73.8	1.4e-21	N/A	unknown function
UniRef90	UHGV-0032313_38	UniRef90_A0A2R2ZGX3	63.9	0.00000000000312	Putative PemI	N/A
eggNOG-mapper	UHGV-0032313_38	1120746.CCNL01000005_gene152	69.3	0.000000000000059	N/A	N/A
Pfam	UHGV-0032313_38	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
structural_annotation	UHGV-0032313_38	PF04014,NF007312,COG2336	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032313_39	UniRef90_R6DRH1	121.0	9.65e-32	Putative TnpX site-specific recombinase	N/A
eggNOG-mapper	UHGV-0032313_39	742738.HMPREF9460_00886	115.0	2.94e-30	N/A	N/A
KOfam	UHGV-0032313_43	K07474	81.7	2e-23	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0032313_43	phrog_51	86.8	2.5e-25	terminase small subunit	head and packaging
UniRef90	UHGV-0032313_43	UniRef90_UPI000833FD0A	95.1	2.89e-22	terminase small subunit	N/A
eggNOG-mapper	UHGV-0032313_43	1391647.AVSV01000003_gene1801	91.3	2.18e-21	Terminase small subunit	N/A
Pfam	UHGV-0032313_43	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0032313_43	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0032313_43	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0032313_44	K06909	263.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0032313_44	phrog_3717	232.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0032313_44	UniRef90_A0A316S7L1	751.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0032313_44	1009370.ALO_12436	575.0	0	Phage terminase, large subunit	N/A
Pfam	UHGV-0032313_44	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0032313_44	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0032313_44	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0032313_44	PF04466,PF20454,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
Pfam	UHGV-0032313_45	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-0032313_45	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0032313_46	phrog_156	436.3	0	portal protein	head and packaging
UniRef90	UHGV-0032313_46	UniRef90_F7NK66	497.0	0	Putative phage portal protein	N/A
eggNOG-mapper	UHGV-0032313_46	401526.TcarDRAFT_1284	522.0	0	Tfp pilus assembly protein FimV	N/A
COG	UHGV-0032313_46	COG3170	N/A	N/A	Type IV pilus assembly protein FimV	N/A
structural_annotation	UHGV-0032313_46	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0032313_49	phrog_334	290.9	0	major head protein	head and packaging
UniRef90	UHGV-0032313_49	UniRef90_A0A316SB53	418.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0032313_49	401526.TcarDRAFT_1286	306.0	0	N/A	N/A
Pfam	UHGV-0032313_49	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0032313_49	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0032313_49	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032313_50	PF20387	N/A	N/A	N/A	N/A
KOfam	UHGV-0032313_51	K12478	43.7	0.00000000000087	EEA1; early endosome antigen 1	N/A
PHROG	UHGV-0032313_51	phrog_1330	56.8	2e-16	tail protein	tail
eggNOG-mapper	UHGV-0032313_51	592028.GCWU000321_01390	122.0	6.81e-25	Putative phage tail protein	N/A
COG	UHGV-0032313_51	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0032313_52	phrog_1419	68.6	1.2e-25	tail protein	tail
PHROG	UHGV-0032313_53	phrog_5302	115.2	3.8e-35	tail protein	tail
eggNOG-mapper	UHGV-0032313_53	665950.HMPREF1025_01337	63.5	0.0000000873	Phage tail-collar fibre protein	N/A
COG	UHGV-0032313_53	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
KOfam	UHGV-0032313_54	K00986	117.8	1e-34	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0032313_54	phrog_1423	184.3	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032313_54	UniRef90_A0A0J6WUF3	348.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0032313_54	411470.RUMGNA_00249	173.0	0	COG COG3344 Retron-type reverse transcriptase	N/A
PADLOC	UHGV-0032313_54	icity0040	86.1	7.6e-25	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0032313_54	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0032313_54	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0032313_54	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032313_55	443152.MDG893_20534	99.0	1.38e-24	N/A	N/A
eggNOG-mapper	UHGV-0032313_56	457424.BFAG_02413	53.5	0.0000000999	N/A	N/A
structural_annotation	UHGV-0032313_56	PF10043,NF008028,COG5544	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032313_58	883156.HMPREF9282_00569	223.0	0	N/A	N/A
structural_annotation	UHGV-0032313_58	PF11134,MF_03008,NF010237,TIGR04362,COG4257	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032313_59	PF00765,MF_02210,NF007644,COG2153	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032313_60	UniRef90_A0A1G6NNF8	150.0	1.92e-39	Intein N-terminal splicing region	N/A
eggNOG-mapper	UHGV-0032313_60	1232428.CAVO010000067_gene416	164.0	1.4013e-45	N/A	N/A
PHROG	UHGV-0032313_62	phrog_9854	261.8	0	N/A	unknown function
UniRef90	UHGV-0032313_62	UniRef90_A0A316S9L9	1123.0	0	Helicase ATP-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0032313_62	401526.TcarDRAFT_1293	377.0	0	protein secretion by the type IV secretion system	N/A
Pfam	UHGV-0032313_62	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
Pfam	UHGV-0032313_62	PF18809	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease1	PBECR1
Pfam	UHGV-0032313_62	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0032313_62	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0032313_62	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
eggNOG-mapper	UHGV-0032313_65	1392502.JNIO01000008_gene1280	225.0	0	N/A	N/A
structural_annotation	UHGV-0032313_65	PF21277	N/A	N/A	N/A	N/A
PHROG	UHGV-0032313_66	phrog_774	63.1	5.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0032313_66	397290.C810_05225	78.2	1.43e-17	N/A	N/A
UniRef90	UHGV-0032313_70	UniRef90_A0A316S6W0	102.0	6.18e-27	HTH luxR-type domain-containing protein	N/A
Pfam	UHGV-0032313_70	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0032313_70	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0032313_70	PF08281,MF_00674,NF001073,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0032313_71	phrog_21718	48.2	0.00000000000018	N/A	unknown function
eggNOG-mapper	UHGV-0032313_71	476272.RUMHYD_01952	54.3	0.000000409	N/A	N/A
eggNOG-mapper	UHGV-0032313_72	476272.RUMHYD_01953	50.1	0.000000438	N/A	N/A
PHROG	UHGV-0032313_73	phrog_16490	102.2	3.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0032313_73	445972.ANACOL_01880	80.1	0.0000000000000045	N/A	N/A
structural_annotation	UHGV-0032313_74	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032313_75	UniRef90_A0A7M1RS47	95.5	3.19e-22	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0032313_75	1378168.N510_03079	60.1	0.0000000107	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0032313	Yes	54,837	46	94	1
UHGV-0025719	No	53,409	46	100	1
UHGV-0005679	No	51,871	46	98	1
UHGV-0000825	No	51,432	46	97	1
UHGV-0038424	No	54,837	46	94	1
UHGV-0003573	No	54,701	46	93	1
UHGV-0002992	No	54,659	46	93	1
UHGV-0000168	No	54,658	46	93	1
UHGV-0013534	No	54,208	46	93	1
UHGV-0021261	No	43,158	46	81	1
UHGV-0029911	No	42,904	46	81	1
UHGV-0009607	No	41,045	46	77	1
UHGV-0034352	No	41,388	45	76	1
UHGV-0026116	No	34,822	46	66	1
UHGV-0023180	No	33,439	46	63	1
UHGV-0025286	No	33,439	46	63	1
UHGV-0016646	No	28,291	46	53	1
UHGV-0026136	No	27,724	46	52	1
UHGV-0026957	No	26,810	46	50	1