vOTU vOTU-012752

vOTU: vOTU-012752

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-012752
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00094 → vGENUS-00214 → vSUBGEN-21847 → vOTU-012752
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1393083
Biosample ID	SAMEA3541486
Genome length (bp)	38,106 bps
CheckV completeness	99.90% (High-quality)
CDS count	69
CDS density	93.15%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135	Total connections	696	Host agreement	93.25
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170	Total connections	15	Host agreement	80

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1393083_3	760568.Desku_0885	58.2	0.0000000703	N/A	N/A
structural_annotation	UHGV-1393083_3	PF14528,PF05204,MF_01420,TIGR00647,COG3780	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1393083_4	PF13412,MF_00674,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1393083_5	phrog_14030	142.5	2.49992e-42	N/A	unknown function
UniRef90	UHGV-1393083_5	UniRef90_R6LL81	247.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1393083_5	1095750.HMPREF9970_2291	129.0	3.69e-33	repeat protein	N/A
COG	UHGV-1393083_5	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
PHROG	UHGV-1393083_6	phrog_6918	97.7	7.1e-29	holin	lysis
UniRef90	UHGV-1393083_6	UniRef90_A0A316QCY7	102.0	4.93e-26	Holin	N/A
eggNOG-mapper	UHGV-1393083_6	1297617.JPJD01000020_gene301	100.0	3.45e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1393083_6	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1393083_6	PF09682,TIGR01673	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1393083_9	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-1393083_11	phrog_29409	42.4	0.0000000000084	N/A	unknown function
PHROG	UHGV-1393083_12	phrog_37900	320.9	0	N/A	unknown function
UniRef90	UHGV-1393083_12	UniRef90_UPI001C3EA4DF	345.0	0	N/A	N/A
eggNOG-mapper	UHGV-1393083_12	552398.HMPREF0866_03098	249.0	0	N/A	N/A
Pfam	UHGV-1393083_12	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-1393083_12	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-1393083_12	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1393083_13	411471.SUBVAR_06929	313.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-1393083_13	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-1393083_14	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1393083_15	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
PHROG	UHGV-1393083_16	phrog_26795	130.9	7e-39	N/A	unknown function
UniRef90	UHGV-1393083_16	UniRef90_A0A5J6T4K8	133.0	5.8e-32	Minor tail protein	N/A
eggNOG-mapper	UHGV-1393083_16	1195236.CTER_5102	135.0	1.29e-33	N/A	N/A
structural_annotation	UHGV-1393083_16	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1393083_17	phrog_37549	80.3	2.2e-27	virion structural protein	head and packaging
UniRef90	UHGV-1393083_17	UniRef90_A0A3D0W045	241.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-1393083_17	1195236.CTER_5103	126.0	1.36e-27	N/A	N/A
structural_annotation	UHGV-1393083_17	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1393083_18	phrog_8462	130.9	1.4e-38	tail length tape measure protein	tail
UniRef90	UHGV-1393083_18	UniRef90_A0A1M6L1P7	248.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-1393083_18	1195236.CTER_5104	242.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1393083_18	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1393083_18	TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1393083_19	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1393083_20	phrog_88	84.0	1.9e-24	major tail protein	tail
UniRef90	UHGV-1393083_20	UniRef90_S0FUN2	115.0	6.67e-29	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1393083_20	1195236.CTER_5106	115.0	1.12e-29	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1393083_20	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-1393083_20	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1393083_20	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1393083_21	phrog_5	45.9	0.0000000000012	tail completion or Neck1 protein	connector
structural_annotation	UHGV-1393083_21	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1393083_22	1487921.DP68_11350	57.8	0.00000000222	N/A	N/A
structural_annotation	UHGV-1393083_22	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1393083_23	phrog_1951	72.9	3.2e-21	head-tail adaptor	connector
UniRef90	UHGV-1393083_23	UniRef90_UPI001B02B074	63.2	0.0000000000734	phage head closure protein	N/A
eggNOG-mapper	UHGV-1393083_23	1094508.Tsac_2422	52.8	0.00000016	Phage head-tail joining protein	N/A
Pfam	UHGV-1393083_23	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-1393083_23	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1393083_23	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1393083_23	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1393083_24	phrog_5223	46.2	0.0000000000006	neck protein	connector
UniRef90	UHGV-1393083_24	UniRef90_B6W9Y5	62.4	0.000000000128	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-1393083_24	561177.ANHYDRO_01411	62.4	0.0000000000215	N/A	N/A
PHROG	UHGV-1393083_25	phrog_10	177.2	0	major head protein	head and packaging
UniRef90	UHGV-1393083_25	UniRef90_UPI00189AE5FE	414.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1393083_25	1280689.AUJC01000011_gene1521	391.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1393083_25	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1393083_25	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1393083_25	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1393083_25	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1393083_26	K01358	132.0	6.7e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1393083_26	phrog_94	197.5	0	head maturation protease	head and packaging
UniRef90	UHGV-1393083_26	UniRef90_UPI0018979DC8	202.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-1393083_26	1280689.AUJC01000011_gene1520	182.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1393083_26	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1393083_26	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1393083_26	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1393083_27	phrog_12	180.2	0	portal protein	head and packaging
UniRef90	UHGV-1393083_27	UniRef90_C4GAS6	501.0	0	Putative phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-1393083_27	626523.GCWU000342_01027	501.0	0	Portal protein	N/A
Pfam	UHGV-1393083_27	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1393083_27	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1393083_27	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1393083_28	phrog_9	385.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-1393083_28	UniRef90_A0A1Y3W5R1	790.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1393083_28	1203606.HMPREF1526_00981	739.0	0	Terminase	N/A
Pfam	UHGV-1393083_28	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1393083_28	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1393083_28	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1393083_28	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1393083_29	phrog_1066	129.4	1.3e-38	N/A	unknown function
eggNOG-mapper	UHGV-1393083_29	1341151.ASZU01000004_gene265	122.0	3.78e-34	N/A	N/A
structural_annotation	UHGV-1393083_29	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-1393083_30	phrog_119	49.3	0.000000000000067	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1393083_30	UniRef90_A0A174XSZ8	124.0	8.33e-35	Prophage LambdaBa04, GP54	N/A
eggNOG-mapper	UHGV-1393083_30	1235793.C809_01915	119.0	7.01e-33	HNH endonuclease	N/A
Pfam	UHGV-1393083_30	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1393083_30	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-1393083_31	1297617.JPJD01000059_gene2640	85.1	2.55e-19	N/A	N/A
structural_annotation	UHGV-1393083_31	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1393083_32	phrog_3584	118.3	5.8e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1393083_32	397290.C810_00404	62.4	0.0000000115	N/A	N/A
structural_annotation	UHGV-1393083_32	PF21578,MF_00360	N/A	N/A	N/A	N/A
KOfam	UHGV-1393083_33	K00571	100.4	1.9e-29	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1393083_33	phrog_23224	181.5	0	DNA methyltransferase	other
UniRef90	UHGV-1393083_33	UniRef90_D4K450	357.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1393083_33	718252.FP2_06750	357.0	0	DNA methylase	N/A
PADLOC	UHGV-1393083_33	MTase_II_00172	93.4	5.8e-29	Type II methyltransferase	RM
Pfam	UHGV-1393083_33	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1393083_33	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1393083_33	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1393083_34	PF08271	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1393083_39	PF10013	N/A	N/A	N/A	N/A
PHROG	UHGV-1393083_41	phrog_190	97.0	2e-28	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1393083_41	UniRef90_UPI0006C2AC63	127.0	9.25e-35	N/A	N/A
eggNOG-mapper	UHGV-1393083_41	1226322.HMPREF1545_00295	113.0	6.51e-30	N/A	N/A
Pfam	UHGV-1393083_41	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1393083_41	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1393083_43	phrog_599	43.1	0.0000000000085	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1393083_43	UniRef90_A0A412AWF1	58.2	0.000000000904	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-1393083_43	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1393083_43	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1393083_43	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1393083_43	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1393083_44	phrog_38832	68.3	3e-21	N/A	unknown function
eggNOG-mapper	UHGV-1393083_44	665956.HMPREF1032_03087	89.7	1.27e-20	N/A	N/A
PHROG	UHGV-1393083_45	phrog_3136	125.7	1.3e-37	N/A	unknown function
UniRef90	UHGV-1393083_45	UniRef90_UPI001C00EDA4	123.0	9.82e-33	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1393083_45	642492.Clole_1416	52.4	0.00000164	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1393083_45	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1393083_45	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
Pfam	UHGV-1393083_46	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1393083_46	NF041588	N/A	N/A	N/A	N/A
UniRef90	UHGV-1393083_47	UniRef90_A0A417H740	158.0	0	N/A	N/A
Pfam	UHGV-1393083_47	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-1393083_49	K00571	124.7	9.3e-37	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1393083_49	phrog_67	105.4	3.1e-31	DNA methyltransferase	other
UniRef90	UHGV-1393083_49	UniRef90_A0A2U1CFM2	415.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1393083_49	658655.HMPREF0988_00878	358.0	0	DNA methylase	N/A
PADLOC	UHGV-1393083_49	MTase_II_00157	94.1	1.8e-27	Type II methyltransferase	RM
Pfam	UHGV-1393083_49	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1393083_49	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1393083_49	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1393083_52	PF05082	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1393083_55	PF10548	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1393083_56	642492.Clole_0961	69.7	0.00000000000000757	N/A	N/A
structural_annotation	UHGV-1393083_56	PF12286	N/A	N/A	N/A	N/A
KOfam	UHGV-1393083_59	K22300	54.7	0.0000000000000024	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1393083_59	phrog_4	50.0	0.000000000000075	transcriptional repressor	transcription regulation
UniRef90	UHGV-1393083_59	UniRef90_A0A2U1BEG8	119.0	1.9e-32	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1393083_59	1235797.C816_03553	107.0	7.27e-28	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-1393083_59	retron_type_VI_hth_cluster2_1	42.3	0.000000000015	N/A	Retron
Pfam	UHGV-1393083_59	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1393083_59	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1393083_59	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1393083_61	622312.ROSEINA2194_02761	59.3	0.0000000495	NOG18738 non supervised orthologous group	N/A
COG	UHGV-1393083_61	COG2169	N/A	N/A	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	N/A
structural_annotation	UHGV-1393083_61	PF02805	N/A	N/A	N/A	N/A
PHROG	UHGV-1393083_62	phrog_10292	75.0	6.2e-22	N/A	unknown function
UniRef90	UHGV-1393083_62	UniRef90_A0A359BK54	96.7	1.07e-22	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1393083_62	1198452.Jab_1c20720	79.0	6.57e-17	TM2 domain	N/A
Pfam	UHGV-1393083_62	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1393083_62	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-1393083_62	COG2314	N/A	N/A	N/A	N/A
UniRef90	UHGV-1393083_63	UniRef90_A0A810PZB1	69.7	0.00000000000518	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1393083_63	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1393083_63	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1393083_63	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1393083_64	K06400	378.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1393083_64	phrog_95	366.0	0	integrase	integration and excision
UniRef90	UHGV-1393083_64	UniRef90_UPI00189960B8	489.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1393083_64	1235835.C814_00825	400.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1393083_64	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1393083_64	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1393083_64	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1393083_64	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1393083_64	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1393083_65	UniRef90_A0A7M1RTM1	78.6	0.0000000000000042	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1393083_65	1378168.N510_03079	69.7	0.00000000000395	N/A	N/A
UniRef90	UHGV-1393083_69	UniRef90_UPI00164AED9E	91.3	8.7e-22	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1393083_69	1235798.C817_04600	62.0	0.0000000000436	N/A	N/A
structural_annotation	UHGV-1393083_69	NF040522,COG2944	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1393083	Yes	38,106	58	100	1
UHGV-2034056	No	33,438	57	91	1
UHGV-0100242	No	28,774	58	78	1