vOTU vOTU-012754

vOTU: vOTU-012754

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-012754
Number of genomes	10
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Schaedlerella → ERR7745408_bin.59
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-03774 → vGENUS-05839 → vSUBGEN-19977 → vOTU-012754
Host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Clostridioides → Clostridioides difficile
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0029950
Biosample ID	N/A
Genome length (bp)	36,513 bps
CheckV completeness	90.71% (High-quality)
CDS count	54
CDS density	95.40%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Clostridioides → Clostridioides difficile	Total connections	41	Host agreement	78.05
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Schaedlerella → ERR7745408_bin.59	Total connections	8	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 90.71)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0029950_1	K07486	81.2	1.7e-23	K07486; transposase	N/A
PHROG	UHGV-0029950_1	phrog_21610	202.1	0	N/A	unknown function
UniRef90	UHGV-0029950_1	UniRef90_UPI001C11EFFF	290.0	0	transposase	N/A
eggNOG-mapper	UHGV-0029950_1	742765.HMPREF9457_03802	291.0	0	Transposase IS116/IS110/IS902 family	N/A
Pfam	UHGV-0029950_1	PF02371	N/A	N/A	Transposase IS116/IS110/IS902 family	Transposase_20
COG	UHGV-0029950_1	COG3547	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-0029950_1	PF02371	N/A	N/A	N/A	N/A
PHROG	UHGV-0029950_6	phrog_14088	59.5	2.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0029950_6	1256908.HMPREF0373_00648	53.5	0.000000038	N/A	N/A
PHROG	UHGV-0029950_13	phrog_3584	158.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0029950_13	1280698.AUJS01000007_gene1013	351.0	0	N/A	N/A
structural_annotation	UHGV-0029950_13	PF01446	N/A	N/A	N/A	N/A
KOfam	UHGV-0029950_14	K03469	61.7	1.5e-17	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0029950_14	phrog_531	68.6	9e-20	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029950_14	UniRef90_R9JUW5	136.0	1.57e-38	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0029950_14	1235792.C808_03083	136.0	2.64e-39	RNase H	N/A
Pfam	UHGV-0029950_14	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0029950_14	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0029950_14	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0029950_15	1235792.C808_00065	228.0	0	N/A	N/A
eggNOG-mapper	UHGV-0029950_16	97139.C824_00039	192.0	0	PcfJ-like protein	N/A
PHROG	UHGV-0029950_17	phrog_8470	315.4	0	N/A	unknown function
UniRef90	UHGV-0029950_17	UniRef90_UPI001D086F83	683.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0029950_17	1235792.C808_00066	678.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0029950_17	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0029950_17	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0029950_18	phrog_15077	116.9	3e-34	N/A	unknown function
eggNOG-mapper	UHGV-0029950_18	97139.C824_05986	286.0	0	N/A	N/A
structural_annotation	UHGV-0029950_18	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0029950_19	phrog_7566	107.5	5e-32	N/A	unknown function
eggNOG-mapper	UHGV-0029950_19	97139.C824_05985	143.0	1.60028e-42	N/A	N/A
PHROG	UHGV-0029950_20	phrog_2118	104.9	7.1e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029950_20	UniRef90_A0A3R6GLG2	219.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0029950_20	610130.Closa_0730	123.0	6.64e-33	HNH endonuclease	N/A
Pfam	UHGV-0029950_20	PF01844	N/A	N/A	HNH endonuclease	HNH
Pfam	UHGV-0029950_20	PF04448	N/A	N/A	N/A	DUF551
COG	UHGV-0029950_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-0029950_23	UniRef90_A0A143XK80	154.0	1.82169e-44	DZANK-type domain-containing protein	N/A
KOfam	UHGV-0029950_24	K04763	159.9	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0029950_24	phrog_1	123.7	2e-36	integrase	integration and excision
UniRef90	UHGV-0029950_24	UniRef90_A0A143XML8	292.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0029950_24	511680.BUTYVIB_01044	221.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0029950_24	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0029950_24	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0029950_24	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0029950_27	K03111	125.1	8.4e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0029950_27	phrog_44	129.8	2.1e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029950_27	UniRef90_A0A1Y4NVS6	211.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0029950_27	1232453.BAIF02000062_gene1851	209.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0029950_27	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0029950_27	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0029950_27	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0029950_27	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0029950_27	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0029950_28	phrog_11237	117.8	6.3e-35	N/A	unknown function
eggNOG-mapper	UHGV-0029950_28	1235798.C817_04578	183.0	0	N/A	N/A
PHROG	UHGV-0029950_29	phrog_1889	224.1	0	terminase small subunit	head and packaging
UniRef90	UHGV-0029950_29	UniRef90_A0A3D1FT26	290.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0029950_29	33035.JPJF01000107_gene435	227.0	0	N/A	N/A
Pfam	UHGV-0029950_29	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
NCBIFam	UHGV-0029950_29	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-0029950_29	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029950_29	PF06056,NF040601,COG5484	N/A	N/A	N/A	N/A
KOfam	UHGV-0029950_30	K06909	139.1	3.59994e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0029950_30	phrog_10250	213.2	0	N/A	unknown function
UniRef90	UHGV-0029950_30	UniRef90_UPI001C023397	722.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0029950_30	903814.ELI_3215	619.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0029950_30	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0029950_30	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0029950_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0029950_30	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0029950_31	phrog_64	375.8	0	portal protein	head and packaging
UniRef90	UHGV-0029950_31	UniRef90_UPI001A9B67CD	663.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0029950_31	1232453.BAIF02000011_gene3353	630.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0029950_31	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0029950_31	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0029950_31	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0029950_32	phrog_115	332.8	0	minor head protein	head and packaging
UniRef90	UHGV-0029950_32	UniRef90_UPI001BAE0C33	649.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0029950_32	476272.RUMHYD_02847	406.0	0	head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-0029950_32	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0029950_32	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0029950_32	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029950_32	PF04233,PF04002,TIGR01641,NF000642,COG2003,COG2369	N/A	N/A	N/A	N/A
KOfam	UHGV-0029950_34	K07584	77.4	2.2e-22	N/A	N/A
PHROG	UHGV-0029950_34	phrog_4478	90.8	8.8e-27	peptidase	other
UniRef90	UHGV-0029950_34	UniRef90_UPI00156DEF22	140.0	2.09999e-41	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0029950_34	1232453.BAIF02000011_gene3357	126.0	7.62e-37	Cysteine protease Prp	N/A
Pfam	UHGV-0029950_34	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0029950_34	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029950_34	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0029950_35	phrog_172	162.2	0	head scaffolding protein	head and packaging
UniRef90	UHGV-0029950_35	UniRef90_UPI001D0541EB	275.0	0	N/A	N/A
eggNOG-mapper	UHGV-0029950_35	1232453.BAIF02000011_gene3358	158.0	1.4013e-45	N/A	N/A
Pfam	UHGV-0029950_35	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0029950_35	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0029950_36	phrog_544	125.9	2.6e-37	major head protein	head and packaging
UniRef90	UHGV-0029950_36	UniRef90_A0A173ZE35	685.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0029950_36	1232453.BAIF02000011_gene3359	629.0	0	N/A	N/A
Pfam	UHGV-0029950_36	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0029950_36	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0029950_37	phrog_132	80.0	2.2e-23	head-tail adaptor	connector
UniRef90	UHGV-0029950_37	UniRef90_UPI00051BB732	145.0	5.49309e-43	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0029950_37	476272.RUMHYD_02856	122.0	1.26e-34	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0029950_37	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0029950_37	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0029950_38	phrog_348	49.3	0.000000000000096	minor head protein	head and packaging
eggNOG-mapper	UHGV-0029950_38	1235798.C817_03474	108.0	2.29e-29	N/A	N/A
structural_annotation	UHGV-0029950_38	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0029950_39	phrog_5	90.3	2.6e-26	tail completion or Neck1 protein	connector
UniRef90	UHGV-0029950_39	UniRef90_A0A174PPX0	138.0	3.88e-40	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0029950_39	476272.RUMHYD_02858	129.0	2.93e-37	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0029950_39	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0029950_39	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0029950_39	PF05069,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0029950_40	phrog_176	84.1	1.5e-24	tail terminator	connector
UniRef90	UHGV-0029950_40	UniRef90_UPI001D04E689	164.0	0	N/A	N/A
eggNOG-mapper	UHGV-0029950_40	476272.RUMHYD_02859	154.0	0	N/A	N/A
structural_annotation	UHGV-0029950_40	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0029950_41	phrog_238	177.0	0	major tail protein	tail
UniRef90	UHGV-0029950_41	UniRef90_UPI0011DDF241	192.0	0	phage major tail protein, TP901-1 family	N/A
eggNOG-mapper	UHGV-0029950_41	476272.RUMHYD_02860	188.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0029950_41	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
NCBIFam	UHGV-0029950_41	TIGR02126.1	N/A	N/A	phage major tail protein, TP901-1 family	N/A
structural_annotation	UHGV-0029950_41	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0029950_42	phrog_183	82.9	4e-24	tail chaperone protein	tail
UniRef90	UHGV-0029950_42	UniRef90_A0A1C5RIQ9	135.0	1.68e-38	N/A	N/A
eggNOG-mapper	UHGV-0029950_42	476272.RUMHYD_02861	139.0	1.04e-40	Phage tail assembly chaperone protein, TAC	N/A
Pfam	UHGV-0029950_42	PF12363	N/A	N/A	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
structural_annotation	UHGV-0029950_42	PF12363	N/A	N/A	N/A	N/A
PHROG	UHGV-0029950_43	phrog_441	70.7	2.2e-20	tail assembly chaperone	tail
UniRef90	UHGV-0029950_43	UniRef90_A0A0K9N8J7	74.7	0.00000000000000278	N/A	N/A
eggNOG-mapper	UHGV-0029950_43	476272.RUMHYD_02862	111.0	7.39e-31	N/A	N/A
PHROG	UHGV-0029950_44	phrog_19074	412.1	0	N/A	unknown function
UniRef90	UHGV-0029950_44	UniRef90_A0A174PKR4	763.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0029950_44	411462.DORLON_00777	356.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0029950_44	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0029950_44	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0029950_44	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0029950_44	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-0029950_45	phrog_202	304.1	0	distal tail protein Dit	tail
UniRef90	UHGV-0029950_45	UniRef90_UPI001D093A04	843.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0029950_45	1235796.C815_00909	410.0	0	Phage tail protein	N/A
Pfam	UHGV-0029950_45	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0029950_45	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0029950_45	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0029950_45	PF05709,PF21708,TIGR01633,NF041449,COG4722,COG3506	N/A	N/A	N/A	N/A
PHROG	UHGV-0029950_46	phrog_9478	270.7	0	minor tail protein	tail
UniRef90	UHGV-0029950_46	UniRef90_UPI001C0193FC	714.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0029950_46	476272.RUMHYD_02865	392.0	0	N/A	N/A
Pfam	UHGV-0029950_46	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0029950_46	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-0029950_46	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0029950_47	phrog_16164	149.4	1.26117e-44	N/A	unknown function
eggNOG-mapper	UHGV-0029950_47	742733.HMPREF9469_01804	54.7	0.00000763	N/A	N/A
structural_annotation	UHGV-0029950_47	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0029950_49	phrog_28526	124.0	3.2e-37	N/A	unknown function
UniRef90	UHGV-0029950_49	UniRef90_A0A415D4T1	98.2	4.29e-26	N/A	N/A
eggNOG-mapper	UHGV-0029950_49	411462.DORLON_00769	95.5	8.44e-26	N/A	N/A
UniRef90	UHGV-0029950_50	UniRef90_A0A3E5EH69	133.0	4.26e-36	ArsR family transcriptional regulator	N/A
structural_annotation	UHGV-0029950_50	PF01978,MF_01909,NF033788,COG1675	N/A	N/A	N/A	N/A
PHROG	UHGV-0029950_51	phrog_1009	40.0	0.000000000056	N/A	unknown function
UniRef90	UHGV-0029950_51	UniRef90_A0A173RD60	171.0	0	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0029950_51	742765.HMPREF9457_03364	180.0	0	N/A	N/A
PHROG	UHGV-0029950_52	phrog_1129	81.1	7.4e-24	holin	lysis
UniRef90	UHGV-0029950_52	UniRef90_UPI00156E9657	144.0	6.95044e-43	phage holin family protein	N/A
eggNOG-mapper	UHGV-0029950_52	553973.CLOHYLEM_07148	129.0	8.45e-38	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0029950_52	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0029950_52	PF16079	N/A	N/A	N/A	N/A
KOfam	UHGV-0029950_53	K01447	63.8	3e-18	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0029950_53	phrog_833	198.5	0	endolysin	lysis
UniRef90	UHGV-0029950_53	UniRef90_A0A396PS23	634.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0029950_53	411460.RUMTOR_02101	507.0	0	COG NOG33632 non supervised orthologous group	N/A
Pfam	UHGV-0029950_53	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0029950_53	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0029950_53	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0029950_54	1235799.C818_04181	50.4	0.00000111	NMT1/THI5 like	N/A
Pfam	UHGV-0029950_54	PF09084	N/A	N/A	NMT1/THI5 like	NMT1
COG	UHGV-0029950_54	COG0715	N/A	N/A	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0029950	Yes	36,513	40	91	1
UHGV-0033072	No	36,426	40	91	1
UHGV-0017142	No	35,142	40	87	1
UHGV-0025653	No	35,103	40	87	1
UHGV-0006235	No	34,427	40	86	1
UHGV-0040322	No	33,691	40	84	1
UHGV-0027857	No	32,834	40	81	1
UHGV-0033667	No	25,009	40	62	1
UHGV-0030913	No	22,429	39	56	1
UHGV-0022463	No	21,466	40	53	1