vOTU vOTU-012764

vOTU: vOTU-012764

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-012764
Number of genomes	4
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-01071 → vGENUS-01494 → vSUBGEN-32335 → vOTU-012764
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1393762
Biosample ID	N/A
Genome length (bp)	32,627 bps
CheckV completeness	95.04% (High-quality)
CDS count	52
CDS density	90.73%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A	Total connections	879	Host agreement	72.81
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A	Total connections	150	Host agreement	90

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 95.04)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1393762_1	K18830	43.6	0.0000000000062	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1393762_1	phrog_8	41.4	0.000000000029	transcriptional regulator	transcription regulation
UniRef90	UHGV-1393762_1	UniRef90_A0A356C4L0	115.0	7.99e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1393762_1	1035189.HMPREF9954_1968	48.1	0.00000104	sequence-specific DNA binding	N/A
Pfam	UHGV-1393762_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1393762_1	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1393762_1	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1393762_2	phrog_643	57.0	3.2e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1393762_2	UniRef90_A0A358PQD8	73.6	0.00000000000000227	N/A	N/A
eggNOG-mapper	UHGV-1393762_2	562743.JH976434_gene1050	52.8	0.0000000516	N/A	N/A
Pfam	UHGV-1393762_2	PF11195	N/A	N/A	N/A	DUF2829
structural_annotation	UHGV-1393762_2	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-1393762_3	phrog_750	76.4	2.9e-22	N/A	unknown function
eggNOG-mapper	UHGV-1393762_3	1158614.I592_00583	66.6	0.000000000000977	N/A	N/A
structural_annotation	UHGV-1393762_3	PF13835,NF040858	N/A	N/A	N/A	N/A
PHROG	UHGV-1393762_6	phrog_9607	98.9	5.6e-29	N/A	unknown function
eggNOG-mapper	UHGV-1393762_6	1304866.K413DRAFT_4639	82.4	2.81e-17	N/A	N/A
structural_annotation	UHGV-1393762_6	PF02883,MF_00791,NF012200,COG3354	N/A	N/A	N/A	N/A
PHROG	UHGV-1393762_11	phrog_3584	163.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1393762_11	641107.CDLVIII_1314	151.0	2.17061e-42	N/A	N/A
structural_annotation	UHGV-1393762_11	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-1393762_12	K03469	69.9	4.7e-20	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1393762_12	phrog_531	63.6	3e-18	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1393762_12	UniRef90_A0A413YU26	273.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1393762_12	1121447.JONL01000002_gene2134	76.6	0.00000000000000127	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-1393762_12	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1393762_12	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1393762_12	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1393762_13	PF19962,NF011863	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1393762_15	483218.BACPEC_01167	206.0	0	N/A	N/A
PHROG	UHGV-1393762_16	phrog_8470	282.6	0	N/A	unknown function
UniRef90	UHGV-1393762_16	UniRef90_UPI00164C094F	201.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1393762_16	483218.BACPEC_01166	395.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1393762_16	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1393762_16	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1393762_17	phrog_15077	100.2	3.7e-29	N/A	unknown function
UniRef90	UHGV-1393762_17	UniRef90_A0A3A6HZA9	216.0	0	N/A	N/A
eggNOG-mapper	UHGV-1393762_17	483218.BACPEC_01165	224.0	0	N/A	N/A
structural_annotation	UHGV-1393762_17	PF11300,NF038070	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1393762_20	1235790.C805_00035	65.1	0.0000000000616	N/A	N/A
PHROG	UHGV-1393762_21	phrog_2118	121.9	5.1e-36	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1393762_21	UniRef90_R5ZJF1	278.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1393762_21	610130.Closa_0730	124.0	5.38e-35	HNH endonuclease	N/A
Pfam	UHGV-1393762_21	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1393762_21	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1393762_24	phrog_36	60.2	4.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1393762_24	UniRef90_UPI00148AE65B	74.3	0.0000000000000373	N/A	N/A
eggNOG-mapper	UHGV-1393762_24	658655.HMPREF0988_02569	70.1	0.000000000000295	sigma factor activity	N/A
COG	UHGV-1393762_24	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1393762_24	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
UniRef90	UHGV-1393762_26	UniRef90_A0A3R6K9T6	82.4	1.85e-19	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-1393762_26	1042156.CXIVA_01520	70.1	0.00000000000000254	N/A	N/A
structural_annotation	UHGV-1393762_26	PF10723,NF008671,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-1393762_27	UniRef90_A0A292SSH8	88.6	6.11e-22	CopG family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1393762_27	478749.BRYFOR_07643	67.0	0.0000000000000374	N/A	N/A
PHROG	UHGV-1393762_28	phrog_1760	108.5	6.9e-32	anti-termination protein	transcription regulation
UniRef90	UHGV-1393762_28	UniRef90_A0A1C5VLT1	232.0	0	ORF6N domain	N/A
eggNOG-mapper	UHGV-1393762_28	476272.RUMHYD_02879	204.0	0	ORF6N domain	N/A
Pfam	UHGV-1393762_28	PF10543	N/A	N/A	ORF6N domain	ORF6N
structural_annotation	UHGV-1393762_28	PF10543,PF13058,TIGR02681,COG3646,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1393762_29	phrog_119	54.4	0.0000000000000019	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1393762_29	UniRef90_U2R3I0	92.0	3.49e-23	HNH endonuclease domain protein	N/A
eggNOG-mapper	UHGV-1393762_29	1226322.HMPREF1545_00111	92.0	5.85e-24	HNH nucleases	N/A
Pfam	UHGV-1393762_29	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1393762_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1393762_30	phrog_361	70.7	2.3e-20	terminase small subunit	head and packaging
UniRef90	UHGV-1393762_30	UniRef90_A0A1C6H6I9	120.0	9.66e-33	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1393762_30	596315.HMPREF0634_0388	68.6	0.000000000000309	Phage terminase, small subunit	N/A
Pfam	UHGV-1393762_30	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1393762_30	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1393762_31	phrog_9	304.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1393762_31	UniRef90_A0A0D8IV16	964.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1393762_31	1226322.HMPREF1545_00113	838.0	0	Phage Terminase	N/A
Pfam	UHGV-1393762_31	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1393762_31	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1393762_31	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1393762_31	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1393762_32	phrog_12	185.7	0	portal protein	head and packaging
UniRef90	UHGV-1393762_32	UniRef90_A0A358PSB3	481.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1393762_32	1121423.JONT01000042_gene1421	449.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1393762_32	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1393762_32	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1393762_32	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1393762_32	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1393762_33	K06904	151.8	5.60519e-45	N/A	N/A
PHROG	UHGV-1393762_33	phrog_80	178.7	0	head maturation protease	head and packaging
UniRef90	UHGV-1393762_33	UniRef90_A0A358PQU8	283.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1393762_33	398512.JQKC01000009_gene450	277.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-1393762_33	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1393762_33	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1393762_33	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1393762_33	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1393762_34	phrog_10	185.0	0	major head protein	head and packaging
UniRef90	UHGV-1393762_34	UniRef90_R9N389	483.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-1393762_34	1235798.C817_04585	483.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1393762_34	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1393762_34	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1393762_34	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1393762_34	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1393762_35	phrog_2550	66.6	2.2e-19	N/A	unknown function
UniRef90	UHGV-1393762_35	UniRef90_UPI001E35E63D	57.0	0.0000000131	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1393762_35	1226322.HMPREF1545_00117	76.6	4.73e-17	N/A	N/A
structural_annotation	UHGV-1393762_35	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1393762_36	phrog_1951	85.4	4.4e-25	head-tail adaptor	connector
UniRef90	UHGV-1393762_36	UniRef90_A0A2T0F5S3	68.6	0.000000000000539	Phage head-tail adapter protein	N/A
NCBIFam	UHGV-1393762_36	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1393762_36	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1393762_37	phrog_5	53.8	0.0000000000000055	tail completion or Neck1 protein	connector
UniRef90	UHGV-1393762_37	UniRef90_UPI0019588270	102.0	1.82e-25	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1393762_37	665956.HMPREF1032_02261	98.2	1.02e-24	N/A	N/A
Pfam	UHGV-1393762_37	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1393762_37	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1393762_38	phrog_78	52.0	0.000000000000015	tail terminator	connector
UniRef90	UHGV-1393762_38	UniRef90_C2UED4	87.0	4.57e-20	Prophage pi2 protein 38	N/A
eggNOG-mapper	UHGV-1393762_38	476272.RUMHYD_01476	97.8	3.88e-25	COG NOG18352 non supervised orthologous group	N/A
structural_annotation	UHGV-1393762_38	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1393762_39	phrog_88	133.9	1e-39	major tail protein	tail
UniRef90	UHGV-1393762_39	UniRef90_A0A8E3N1Q1	194.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1393762_39	1469948.JPNB01000001_gene698	149.0	4.80645e-43	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1393762_39	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1393762_39	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1393762_40	phrog_709	107.7	7e-32	N/A	unknown function
eggNOG-mapper	UHGV-1393762_40	610130.Closa_0750	129.0	1.04e-36	N/A	N/A
structural_annotation	UHGV-1393762_40	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1393762_41	phrog_1272	267.5	0	tail length tape measure protein	tail
UniRef90	UHGV-1393762_41	UniRef90_A0A1C6HQ77	462.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-1393762_41	610130.Closa_0752	397.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1393762_41	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1393762_41	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1393762_41	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1393762_41	PF10145,MF_04138,TIGR01760,COG5280	N/A	N/A	N/A	N/A
UniRef90	UHGV-1393762_42	UniRef90_A0A1W1XS73	88.6	9.37e-18	Phage-related protein	N/A
eggNOG-mapper	UHGV-1393762_42	411459.RUMOBE_00925	86.3	1.34e-17	phage tail	N/A
COG	UHGV-1393762_42	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1393762_42	PF20753,PF19266,TIGR01633,COG4722	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1393762_43	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-1393762_44	phrog_18110	336.7	0	N/A	unknown function
UniRef90	UHGV-1393762_44	UniRef90_A0A8D9PGP3	572.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-1393762_44	411459.RUMOBE_00923	410.0	0	N/A	N/A
Pfam	UHGV-1393762_44	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1393762_44	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1393762_44	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1393762_44	PF06605,PF18994,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1393762_45	phrog_2566	47.9	0.0000000000002	N/A	unknown function
PHROG	UHGV-1393762_48	phrog_1863	54.9	1.4e-16	N/A	unknown function
UniRef90	UHGV-1393762_48	UniRef90_UPI001D0865D2	83.2	3.17e-19	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-1393762_48	1226322.HMPREF1545_04027	83.6	2.94e-20	N/A	N/A
PHROG	UHGV-1393762_49	phrog_1129	76.1	3.1e-22	holin	lysis
UniRef90	UHGV-1393762_49	UniRef90_UPI000E5CE6BF	159.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1393762_49	411461.DORFOR_00721	100.0	7.96e-27	N/A	N/A
Pfam	UHGV-1393762_49	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1393762_49	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-1393762_50	K07273	99.8	3.7e-29	acm; lysozyme	N/A
PHROG	UHGV-1393762_50	phrog_291	83.5	3.3e-24	endolysin	lysis
UniRef90	UHGV-1393762_50	UniRef90_A0A174PB89	348.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-1393762_50	515620.EUBELI_01316	113.0	1.74e-25	Glycoside Hydrolase Family 25-like lysozyme endolysin	N/A
Pfam	UHGV-1393762_50	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1393762_50	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-1393762_50	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
KOfam	UHGV-1393762_51	K07339	42.3	0.000000000012	hicA; mRNA interferase HicA [EC:3.1.-.-]	N/A
PHROG	UHGV-1393762_51	phrog_353	76.9	1.7e-22	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1393762_51	UniRef90_A0A1H3VXF8	92.0	2.36e-23	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
eggNOG-mapper	UHGV-1393762_51	1408311.JNJM01000002_gene1308	92.0	3.97e-24	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-1393762_51	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-1393762_51	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-1393762_51	PF07927,COG1724	N/A	N/A	N/A	N/A
KOfam	UHGV-1393762_52	K18843	63.1	6.5e-18	hicB; antitoxin HicB	N/A
PHROG	UHGV-1393762_52	phrog_497	82.8	6e-24	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1393762_52	UniRef90_A0A413P9Z2	213.0	0	HicB family protein	N/A
eggNOG-mapper	UHGV-1393762_52	1410612.JNKO01000006_gene1220	182.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-1393762_52	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-1393762_52	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-1393762_52	PF15919,COG1598	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1393762	Yes	32,627	37	95	1
UHGV-0099721	No	40,395	36	100	1
UHGV-0376409	No	32,158	37	94	1
UHGV-0279954	No	25,217	38	75	1