vOTU vOTU-013058

vOTU: vOTU-013058

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-013058
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00074 → vSUBFAM-00832 → vGENUS-02406 → vOTU-013058
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → Borkfalkiaceae → UBA10281 → UBA10281 sp900767815
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0039752
Biosample ID	SAMEA4969162
Genome length (bp)	33,291 bps
CheckV completeness	83.65% (Medium-quality)
CDS count	51
CDS density	93.92%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → Borkfalkiaceae → UBA10281 → UBA10281 sp900767815	Total connections	18	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → Borkfalkiaceae → UBA10281 → UBA10281 sp900548285	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 83.65)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0039752_1	K24213	45.8	0.00000000000076	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0039752_1	phrog_27197	60.7	3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0039752_1	886882.PPSC2_p0363	73.9	0.000000000000293	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-0039752_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0039752_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0039752_1	NF007410	N/A	N/A	N/A	N/A
PHROG	UHGV-0039752_3	phrog_155	80.4	2.5e-23	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039752_3	UniRef90_A0A1S1V922	137.0	4.37e-37	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0039752_3	1095743.HMPREF1054_1927	133.0	4.59e-36	ERF superfamily	N/A
Pfam	UHGV-0039752_3	PF04404	N/A	N/A	ERF superfamily	ERF
KOfam	UHGV-0039752_5	K03111	140.2	2.20004e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0039752_5	phrog_44	127.5	1.1e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039752_5	UniRef90_R7FWV6	158.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0039752_5	1033739.CAEU01000052_gene285	127.0	4.31e-35	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0039752_5	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0039752_5	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0039752_5	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0039752_5	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0039752_5	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0039752_6	phrog_190	93.9	1.8e-27	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039752_6	UniRef90_UPI000C817A46	118.0	4.52e-32	N/A	N/A
eggNOG-mapper	UHGV-0039752_6	445974.CLORAM_02947	104.0	3.78e-27	N/A	N/A
Pfam	UHGV-0039752_6	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0039752_6	PF06356,MF_04160,NF033179,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0039752_7	phrog_2562	115.0	5.5e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039752_7	UniRef90_UPI00137AD09D	129.0	1.16e-32	N/A	N/A
eggNOG-mapper	UHGV-0039752_7	445971.ANASTE_00700	117.0	7.45e-29	N/A	N/A
Pfam	UHGV-0039752_7	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0039752_7	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0039752_7	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-0039752_12	K00558	177.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0039752_12	phrog_116	192.0	0	DNA methyltransferase	other
UniRef90	UHGV-0039752_12	UniRef90_R9KEA8	322.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0039752_12	397290.C810_05213	322.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0039752_12	MTase_II_00058	176.7	0	Type II methyltransferase	RM
Pfam	UHGV-0039752_12	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0039752_12	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0039752_12	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0039752_12	PF00145,MF_02100,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0039752_14	phrog_236	103.6	3.6e-30	nucleotide kinase	other
UniRef90	UHGV-0039752_14	UniRef90_A0A418MBD6	94.0	4.66e-23	N/A	N/A
eggNOG-mapper	UHGV-0039752_14	500635.MITSMUL_03175	80.9	3.82e-17	N/A	N/A
Pfam	UHGV-0039752_14	PF11753	N/A	N/A	N/A	DUF3310
PHROG	UHGV-0039752_16	phrog_3136	77.4	1.4e-22	N/A	unknown function
UniRef90	UHGV-0039752_16	UniRef90_A0A843H9M8	63.9	0.00000000371	ASCH domain-containing protein	N/A
structural_annotation	UHGV-0039752_16	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
Pfam	UHGV-0039752_17	PF08279	N/A	N/A	HTH domain	HTH_11
structural_annotation	UHGV-0039752_23	PF10723,NF040976	N/A	N/A	N/A	N/A
KOfam	UHGV-0039752_24	K03497	50.8	0.000000000000017	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0039752_24	phrog_21498	261.3	0	N/A	unknown function
UniRef90	UHGV-0039752_24	UniRef90_A0A7X2P836	273.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0039752_24	469378.Ccur_02830	253.0	0	DNA binding	N/A
PADLOC	UHGV-0039752_24	MTase_II_00015	69.0	8.3e-20	Type II methyltransferase	RM
Pfam	UHGV-0039752_24	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0039752_24	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0039752_24	PF02195,PF05869,MF_02015,TIGR00180,TIGR01712,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039752_25	PF07141,NF012144	N/A	N/A	N/A	N/A
KOfam	UHGV-0039752_26	K06909	70.1	3.2e-20	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0039752_26	phrog_2	61.2	2.4e-17	terminase large subunit	head and packaging
UniRef90	UHGV-0039752_26	UniRef90_A0A345BNW5	439.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0039752_26	552396.HMPREF0863_01628	121.0	2.73e-27	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0039752_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
PHROG	UHGV-0039752_27	phrog_533	168.1	0	portal protein	head and packaging
UniRef90	UHGV-0039752_27	UniRef90_A0A345BNV5	406.0	0	Putative portal protein	N/A
eggNOG-mapper	UHGV-0039752_27	33035.JPJF01000093_gene2257	95.5	6.69e-18	N/A	N/A
PHROG	UHGV-0039752_28	phrog_581	88.1	2.5e-26	minor head protein	head and packaging
UniRef90	UHGV-0039752_28	UniRef90_F2JPK1	59.3	0.00000487	Minor capsid 2 protein	N/A
eggNOG-mapper	UHGV-0039752_28	1497679.EP56_07780	61.6	0.000000102	Phage minor capsid protein 2	N/A
Pfam	UHGV-0039752_28	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0039752_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039752_28	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0039752_29	phrog_194	95.5	7.2e-28	head scaffolding protein	head and packaging
UniRef90	UHGV-0039752_29	UniRef90_UPI00090BA236	86.7	1.43e-17	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0039752_29	1444310.JANV01000162_gene1175	55.8	0.000000521	Phage minor structural protein GP20	N/A
Pfam	UHGV-0039752_29	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0039752_29	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0039752_30	phrog_422	299.9	0	major head protein	head and packaging
UniRef90	UHGV-0039752_30	UniRef90_A0A3C2DU69	545.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0039752_30	545697.HMPREF0216_02849	353.0	0	N/A	N/A
structural_annotation	UHGV-0039752_30	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039752_33	PF11114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039752_34	PF06199,PF08873,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039752_36	PF14594,TIGR01646,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0039752_39	1384065.JAGS01000001_gene2507	73.2	0.00000000000862	domain, Protein	N/A
NCBIFam	UHGV-0039752_39	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
COG	UHGV-0039752_39	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
Pfam	UHGV-0039752_40	PF18902	N/A	N/A	N/A	DUF5658
structural_annotation	UHGV-0039752_41	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0039752_46	phrog_21718	46.1	0.00000000000086	N/A	unknown function
eggNOG-mapper	UHGV-0039752_48	476272.RUMHYD_01770	68.9	0.0000000000128	N/A	N/A
structural_annotation	UHGV-0039752_49	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039752_50	UniRef90_A0A8F0WD75	76.6	0.0000000000000174	RNA polymerase sigma factor/Ubiquitin-like protein	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0039752	Yes	33,291	43	84	1
UHGV-0032806	No	38,389	43	96	1
UHGV-0005793	No	36,592	43	92	1
UHGV-0011467	No	34,404	43	86	1
UHGV-0032120	No	21,148	42	53	1