vOTU vOTU-013082

vOTU: vOTU-013082

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-013082
Number of genomes	14
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Clostridium_Q → Clostridium_Q symbiosum
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-02138 → vGENUS-03037 → vSUBGEN-04267 → vOTU-013082
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Clostridium_Q → Clostridium_Q symbiosum
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0119141
Biosample ID	N/A
Genome length (bp)	30,921 bps
CheckV completeness	99.90% (High-quality)
CDS count	48
CDS density	89.39%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Clostridium_Q → Clostridium_Q symbiosum	Total connections	429	Host agreement	98.14
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Clostridium_Q → Clostridium_Q symbiosum	Total connections	22	Host agreement	95.45

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0119141_1	K14059	190.3	0	int; integrase	N/A
PHROG	UHGV-0119141_1	phrog_1	159.4	0	integrase	integration and excision
UniRef90	UHGV-0119141_1	UniRef90_D9R5C3	324.0	0	Integrase family protein	N/A
eggNOG-mapper	UHGV-0119141_1	742740.HMPREF9474_04330	822.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0119141_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0119141_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0119141_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0119141_1	PF00589,MF_01808,TIGR02225,NF041908,COG4974,COG3422	N/A	N/A	N/A	N/A
UniRef90	UHGV-0119141_2	UniRef90_UPI001D073EE1	309.0	0	OB-fold putative lipoprotein	N/A
eggNOG-mapper	UHGV-0119141_2	742740.HMPREF9474_04329	783.0	0	N/A	N/A
KOfam	UHGV-0119141_4	K18830	46.9	0.00000000000053	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0119141_4	phrog_8	50.5	0.000000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-0119141_4	UniRef90_E7GTT3	297.0	0	XRE family Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0119141_4	742740.HMPREF9474_04328	297.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0119141_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0119141_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0119141_4	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0119141_6	UniRef90_E7GTT1	158.0	0	HTH_17 domain-containing protein	N/A
eggNOG-mapper	UHGV-0119141_6	742740.HMPREF9474_04326	158.0	0	N/A	N/A
Pfam	UHGV-0119141_6	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0119141_6	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-0119141_6	PF21531,TIGR01764,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0119141_7	UniRef90_W1I5S0	50.8	0.000000721	Uncultured bacterium plasmid pRGI00460	N/A
PHROG	UHGV-0119141_8	phrog_3584	164.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0119141_8	742740.HMPREF9474_04323	516.0	0	N/A	N/A
structural_annotation	UHGV-0119141_8	PF11726	N/A	N/A	N/A	N/A
KOfam	UHGV-0119141_11	K03469	52.8	0.0000000000000075	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0119141_11	phrog_531	47.8	0.00000000000024	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0119141_11	UniRef90_E7GTS5	181.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0119141_11	742740.HMPREF9474_04320	181.0	0	RNA-DNA hybrid ribonuclease activity	N/A
Pfam	UHGV-0119141_11	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0119141_11	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0119141_11	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0119141_12	phrog_7566	91.8	4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0119141_12	742740.HMPREF9474_04319	233.0	0	N/A	N/A
UniRef90	UHGV-0119141_14	UniRef90_A0A894KBW2	50.8	0.00000626	LexA_DNA_bind domain-containing protein	N/A
eggNOG-mapper	UHGV-0119141_14	742723.HMPREF9477_00922	48.9	0.00000266	N/A	N/A
KOfam	UHGV-0119141_15	K06284	59.2	7.8e-17	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	N/A
PHROG	UHGV-0119141_15	phrog_4681	62.5	4.7e-18	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0119141_15	UniRef90_A0A413JGL2	75.5	1.75e-16	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0119141_15	742740.HMPREF9474_00080	75.5	2.93e-17	toxin-antitoxin pair type II binding	N/A
COG	UHGV-0119141_15	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
PHROG	UHGV-0119141_17	phrog_24368	80.7	1.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-0119141_17	742740.HMPREF9474_04313	276.0	0	N/A	N/A
KOfam	UHGV-0119141_18	K04763	191.1	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0119141_18	phrog_1	148.0	7.56701e-44	integrase	integration and excision
UniRef90	UHGV-0119141_18	UniRef90_A0A6N3HKR6	434.0	0	Tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0119141_18	742740.HMPREF9474_04312	663.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0119141_18	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0119141_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0119141_18	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0119141_18	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0119141_19	phrog_36	40.3	0.000000000063	transcriptional regulator	transcription regulation
UniRef90	UHGV-0119141_19	UniRef90_A0A3R6NEA8	147.0	8.0897e-42	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0119141_19	742740.HMPREF9474_04310	270.0	0	N/A	N/A
PHROG	UHGV-0119141_20	phrog_119	71.4	1.3e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0119141_20	UniRef90_UPI001899B9AE	218.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0119141_20	742740.HMPREF9474_04309	146.0	1.26117e-44	HNH endonuclease	N/A
Pfam	UHGV-0119141_20	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0119141_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0119141_21	phrog_1066	129.9	8.8e-39	N/A	unknown function
UniRef90	UHGV-0119141_21	UniRef90_A0A0D0SQQ8	111.0	2.39e-29	N/A	N/A
eggNOG-mapper	UHGV-0119141_21	742740.HMPREF9474_04308	216.0	0	N/A	N/A
structural_annotation	UHGV-0119141_21	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0119141_22	phrog_9	334.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0119141_22	UniRef90_UPI00073E3369	929.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0119141_22	742740.HMPREF9474_04307	1083.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-0119141_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0119141_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0119141_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0119141_22	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0119141_23	phrog_12	138.4	4.10006e-41	portal protein	head and packaging
UniRef90	UHGV-0119141_23	UniRef90_D1PNC9	604.0	0	Putative phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0119141_23	742740.HMPREF9474_04306	778.0	0	Phage portal protein	N/A
Pfam	UHGV-0119141_23	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0119141_23	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0119141_23	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0119141_24	K06904	132.9	3.4e-39	N/A	N/A
PHROG	UHGV-0119141_24	phrog_80	151.0	8.40779e-45	head maturation protease	head and packaging
UniRef90	UHGV-0119141_24	UniRef90_E7GTR0	394.0	0	Caudovirus prohead protease	N/A
eggNOG-mapper	UHGV-0119141_24	742740.HMPREF9474_04305	394.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0119141_24	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0119141_24	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0119141_24	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0119141_24	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0119141_25	phrog_10	82.0	8.3e-24	major head protein	head and packaging
UniRef90	UHGV-0119141_25	UniRef90_A0A1C5W5F9	455.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-0119141_25	742740.HMPREF9474_04304	716.0	0	Phage capsid family	N/A
Pfam	UHGV-0119141_25	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0119141_25	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0119141_25	PF05065,PF09032,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0119141_26	phrog_5223	72.0	5.4e-21	neck protein	connector
UniRef90	UHGV-0119141_26	UniRef90_UPI0011832E85	183.0	0	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0119141_26	742740.HMPREF9474_04303	159.0	0	N/A	N/A
NCBIFam	UHGV-0119141_26	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0119141_26	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0119141_27	phrog_1951	56.6	2e-17	head-tail adaptor	connector
UniRef90	UHGV-0119141_27	UniRef90_A0A2C5GPS3	57.0	0.0000000191	Phage head-tail adapter protein	N/A
COG	UHGV-0119141_27	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0119141_27	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0119141_28	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0119141_29	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0119141_30	phrog_88	118.2	6.1e-35	major tail protein	tail
UniRef90	UHGV-0119141_30	UniRef90_UPI001D1188C4	270.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0119141_30	742740.HMPREF9474_04299	372.0	0	N/A	N/A
NCBIFam	UHGV-0119141_30	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0119141_30	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0119141_33	phrog_33680	141.9	2.59941e-42	N/A	unknown function
UniRef90	UHGV-0119141_33	UniRef90_A0A174XMM8	471.0	0	Tail tape measure protein TP901 core region	N/A
eggNOG-mapper	UHGV-0119141_33	742740.HMPREF9474_04296	1016.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-0119141_33	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0119141_33	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0119141_34	phrog_37549	96.3	1.1e-28	virion structural protein	head and packaging
UniRef90	UHGV-0119141_34	UniRef90_UPI00189CF998	345.0	0	DNRLRE domain-containing protein	N/A
eggNOG-mapper	UHGV-0119141_34	1195236.CTER_5103	188.0	0	N/A	N/A
structural_annotation	UHGV-0119141_34	PF06995,PF02010,MF_04116,TIGR02126,NF041431,COG3499,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-0119141_35	phrog_26795	203.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0119141_35	742740.HMPREF9474_04294	716.0	0	N/A	N/A
structural_annotation	UHGV-0119141_35	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0119141_36	phrog_12764	59.3	5.5e-17	N/A	unknown function
structural_annotation	UHGV-0119141_36	PF01176,MF_00085,TIGR00523,COG0361	N/A	N/A	N/A	N/A
PHROG	UHGV-0119141_37	phrog_3639	49.4	0.000000000000058	minor tail protein	tail
UniRef90	UHGV-0119141_37	UniRef90_E7GTP7	440.0	0	BppU_N domain-containing protein	N/A
Pfam	UHGV-0119141_37	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0119141_37	PF10651	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0119141_38	742740.HMPREF9474_04291	208.0	0	N/A	N/A
NCBIFam	UHGV-0119141_39	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0119141_39	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0119141_40	phrog_1863	78.9	8e-24	N/A	unknown function
UniRef90	UHGV-0119141_40	UniRef90_UPI001F223E8B	123.0	6.37e-35	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0119141_40	1226322.HMPREF1545_04027	78.2	6.78e-18	N/A	N/A
PHROG	UHGV-0119141_41	phrog_1129	74.4	9.9e-22	holin	lysis
UniRef90	UHGV-0119141_41	UniRef90_A0A2N0KEV2	158.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0119141_41	742740.HMPREF9474_03522	158.0	0	N/A	N/A
Pfam	UHGV-0119141_41	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0119141_41	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0119141_42	phrog_38078	139.3	0	N/A	unknown function
UniRef90	UHGV-0119141_42	UniRef90_E7GTP4	573.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-0119141_42	742740.HMPREF9474_04289	573.0	0	Peptidoglycan-binding domain 1 protein	N/A
Pfam	UHGV-0119141_42	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0119141_42	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0119141_42	PF13457,TIGR02594,NF033202,COG0791	N/A	N/A	N/A	N/A
KOfam	UHGV-0119141_43	K19118	241.9	0	csd2, cas7; CRISPR-associated protein Csd2	N/A
UniRef90	UHGV-0119141_43	UniRef90_E7GTP3	573.0	0	Csd2 family CRISPR-associated protein	N/A
eggNOG-mapper	UHGV-0119141_43	742740.HMPREF9474_04288	573.0	0	N/A	N/A
PADLOC	UHGV-0119141_43	cas_Csd2	264.2	0	CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG	CRISPR-CAS
Pfam	UHGV-0119141_43	PF05107	N/A	N/A	CRISPR-associated protein Cas7	Cas_Cas7
NCBIFam	UHGV-0119141_43	TIGR02589.1	N/A	N/A	type I-C CRISPR-associated protein Cas7/Csd2	N/A
COG	UHGV-0119141_43	COG3649	N/A	N/A	CRISPR-Cas system type I effector complex subunit Cas7, RAMP superfamily	N/A
structural_annotation	UHGV-0119141_43	PF05107,TIGR02589,COG3649	N/A	N/A	N/A	N/A
PHROG	UHGV-0119141_44	phrog_25567	77.0	1.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-0119141_44	411469.EUBHAL_00738	76.6	1.96e-16	N/A	N/A
AcrCatalog	UHGV-0119141_44	cluster_37554	236.0	0	NA	N/A
AcrCatalog	UHGV-0119141_45	cluster_29073	147.0	0	NA	N/A
PHROG	UHGV-0119141_47	phrog_1281	135.2	2.6e-40	N/A	unknown function
UniRef90	UHGV-0119141_47	UniRef90_UPI0005D1A37C	295.0	0	N/A	N/A
eggNOG-mapper	UHGV-0119141_47	936375.HMPREF1152_1710	139.0	3.32e-40	N/A	N/A
Pfam	UHGV-0119141_47	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0119141_47	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0119141_47	PF13274,COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-0119141_48	phrog_5763	62.9	2e-19	N/A	unknown function
eggNOG-mapper	UHGV-0119141_48	742740.HMPREF9474_04284	643.0	0	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0119141	Yes	30,921	43	100	1
UHGV-0146198	No	34,372	43	100	1
UHGV-1433405	No	31,005	43	100	1
UHGV-1406324	No	26,086	43	86	1
UHGV-1402029	No	25,826	43	86	1
UHGV-2077276	No	24,630	43	82	1
UHGV-1394393	No	16,798	43	56	1
UHGV-0182671	No	16,778	43	56	1
UHGV-1394094	No	16,480	43	55	1
UHGV-1545542	No	11,441	44	38	1
UHGV-1987212	No	11,228	44	38	1
UHGV-1781808	No	11,110	44	37	1
UHGV-2068995	No	10,295	43	25	1
UHGV-0436719	No	10,640	41	16	1