vOTU vOTU-013139

vOTU: vOTU-013139

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-013139
Number of genomes	9
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00197 → vGENUS-05900 → vSUBGEN-19015 → vOTU-013139
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C → Ruminococcus_C callidus
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1473959
Biosample ID	SAMEA3708595
Genome length (bp)	40,006 bps
CheckV completeness	96.44% (High-quality)
CDS count	45
CDS density	93.77%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C → Ruminococcus_C sp000980705	Total connections	40	Host agreement	80
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C → Ruminococcus_C callidus	Total connections	101	Host agreement	84.16

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 96.44)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1473959_1	K06400	319.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1473959_1	phrog_95	327.4	0	integrase	integration and excision
UniRef90	UHGV-1473959_1	UniRef90_A0A6G3M4R6	536.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1473959_1	1120746.CCNL01000014_gene2079	373.0	0	Recombinase	N/A
Pfam	UHGV-1473959_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1473959_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1473959_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1473959_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1473959_1	PF00239,PF13408,PF14235,NF041201,COG1961,COG1579	N/A	N/A	N/A	N/A
PHROG	UHGV-1473959_2	phrog_1847	326.4	0	N/A	unknown function
UniRef90	UHGV-1473959_2	UniRef90_D1PLA1	348.0	0	T5orf172 domain-containing protein	N/A
eggNOG-mapper	UHGV-1473959_2	411471.SUBVAR_05139	348.0	0	T5orf172	N/A
Pfam	UHGV-1473959_2	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-1473959_2	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1473959_2	PF19962	N/A	N/A	N/A	N/A
KOfam	UHGV-1473959_3	K01356	85.3	9.6e-25	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1473959_3	phrog_4	134.7	7.2e-40	transcriptional repressor	transcription regulation
UniRef90	UHGV-1473959_3	UniRef90_UPI001D0096C0	321.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1473959_3	665956.HMPREF1032_04076	165.0	0	Peptidase S24-like	N/A
Pfam	UHGV-1473959_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1473959_3	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1473959_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1473959_3	PF00717,PF01381,MF_00015,NF041951,NF007621,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-1473959_4	K07727	47.5	0.00000000000047	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-1473959_4	UniRef90_UPI001D007243	102.0	2e-27	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1473959_4	861454.HMPREF9099_00333	56.6	0.000000000826	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1473959_4	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1473959_4	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1473959_6	K07741	140.7	2.20004e-41	antB; anti-repressor protein	N/A
PHROG	UHGV-1473959_6	phrog_5817	110.0	2.7e-32	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1473959_6	UniRef90_A0A356CZA0	327.0	0	Oxidoreductase	N/A
eggNOG-mapper	UHGV-1473959_6	1540257.JQMW01000004_gene443	283.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-1473959_6	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1473959_6	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1473959_6	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1473959_6	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-1473959_8	phrog_31564	106.8	1.1e-31	N/A	unknown function
PHROG	UHGV-1473959_13	phrog_18562	56.0	0.000000000000001	N/A	unknown function
eggNOG-mapper	UHGV-1473959_13	717606.PaecuDRAFT_3099	59.7	0.00000000414	N/A	N/A
PHROG	UHGV-1473959_14	phrog_69	353.9	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1473959_14	UniRef90_A0A3G2R530	411.0	0	N/A	N/A
eggNOG-mapper	UHGV-1473959_14	1449126.JQKL01000006_gene838	391.0	0	N/A	N/A
Pfam	UHGV-1473959_14	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-1473959_14	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-1473959_14	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1473959_15	phrog_112	180.7	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1473959_15	UniRef90_A0A3G2R4B8	233.0	0	N/A	N/A
eggNOG-mapper	UHGV-1473959_15	1089548.KI783301_gene2633	227.0	0	N/A	N/A
Pfam	UHGV-1473959_15	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-1473959_15	PF10991,MF_04153,NF005241	N/A	N/A	N/A	N/A
KOfam	UHGV-1473959_16	K02334	862.6	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-1473959_16	phrog_17	397.0	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1473959_16	UniRef90_UPI0014517056	870.0	0	DNA polymerase	N/A
eggNOG-mapper	UHGV-1473959_16	1449126.JQKL01000006_gene840	869.0	0	DNA polymerase	N/A
Pfam	UHGV-1473959_16	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-1473959_16	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-1473959_16	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-1473959_17	phrog_256	1022.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1473959_17	UniRef90_A0A3G2R4E0	1022.0	0	Virulence-associated protein E	N/A
eggNOG-mapper	UHGV-1473959_17	1321778.HMPREF1982_02544	973.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-1473959_17	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-1473959_17	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-1473959_17	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-1473959_18	phrog_93	62.1	8.4e-18	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1473959_18	UniRef90_UPI001B1C1B04	95.5	1.13e-23	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1473959_18	1000569.HMPREF1040_0204	93.2	1.77e-23	VRR_NUC	N/A
structural_annotation	UHGV-1473959_18	PF01974,MF_01490,NF011269	N/A	N/A	N/A	N/A
KOfam	UHGV-1473959_19	K14440	114.7	1.4e-34	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-1473959_19	phrog_62	392.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1473959_19	UniRef90_A0A327YN49	642.0	0	SNF2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1473959_19	86416.Clopa_0567	620.0	0	snf2 family	N/A
PADLOC	UHGV-1473959_19	DpdE_00010	78.6	8.4e-23	DpdE	DPD
Pfam	UHGV-1473959_19	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1473959_19	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1473959_19	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1473959_19	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1473959_21	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1473959_22	phrog_606	76.4	4e-22	terminase small subunit	head and packaging
UniRef90	UHGV-1473959_22	UniRef90_UPI001D088AD3	174.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1473959_22	762984.HMPREF9445_00166	52.8	0.00000206	DNA-packaging protein gp3	N/A
Pfam	UHGV-1473959_22	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1473959_22	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1473959_23	K06909	95.7	6.2e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1473959_23	phrog_2	81.2	2.1e-23	terminase large subunit	head and packaging
UniRef90	UHGV-1473959_23	UniRef90_A0A373XSH6	640.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1473959_23	1282664.H354_06621	532.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-1473959_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1473959_23	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1473959_24	phrog_533	260.7	0	portal protein	head and packaging
UniRef90	UHGV-1473959_24	UniRef90_A0A3D5LTG9	512.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-1473959_24	742740.HMPREF9474_03501	483.0	0	N/A	N/A
structural_annotation	UHGV-1473959_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1473959_25	phrog_581	262.8	0	minor head protein	head and packaging
UniRef90	UHGV-1473959_25	UniRef90_UPI0018AA82F0	307.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1473959_25	394503.Ccel_3295	283.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1473959_25	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1473959_25	COG2733	N/A	N/A	N/A	N/A
PHROG	UHGV-1473959_27	phrog_2303	93.5	2.8e-27	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1473959_27	483218.BACPEC_01156	108.0	9.84e-27	N/A	N/A
PHROG	UHGV-1473959_28	phrog_422	300.3	0	major head protein	head and packaging
UniRef90	UHGV-1473959_28	UniRef90_A0A413RCT9	389.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-1473959_28	552396.HMPREF0863_01635	368.0	0	N/A	N/A
structural_annotation	UHGV-1473959_28	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1473959_29	phrog_1378	56.0	6.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-1473959_29	1298920.KI911353_gene4849	52.8	0.0000000339	N/A	N/A
PHROG	UHGV-1473959_30	phrog_541	74.1	1.7e-21	head-tail adaptor	connector
eggNOG-mapper	UHGV-1473959_30	1304866.K413DRAFT_0783	115.0	1.45e-31	N/A	N/A
PHROG	UHGV-1473959_31	phrog_8710	104.6	6.4e-31	N/A	unknown function
eggNOG-mapper	UHGV-1473959_31	33035.JPJF01000093_gene2249	95.5	4.76e-24	N/A	N/A
structural_annotation	UHGV-1473959_31	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1473959_32	phrog_556	77.7	1.3e-22	minor head protein	head and packaging
eggNOG-mapper	UHGV-1473959_32	742740.HMPREF9474_03509	114.0	4.13e-31	N/A	N/A
PHROG	UHGV-1473959_33	phrog_2595	82.1	6.3e-24	head-tail connector protein	connector
UniRef90	UHGV-1473959_33	UniRef90_UPI0003F673FD	94.0	4.17e-22	minor capsid protein	N/A
eggNOG-mapper	UHGV-1473959_33	33035.JPJF01000093_gene2247	95.9	1.27e-23	N/A	N/A
Pfam	UHGV-1473959_33	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1473959_33	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1473959_34	phrog_820	113.6	1.1e-33	major tail protein	tail
eggNOG-mapper	UHGV-1473959_34	1507.HMPREF0262_01184	165.0	0	domain, Protein	N/A
COG	UHGV-1473959_34	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1473959_34	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1473959_35	phrog_8300	77.3	1.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-1473959_35	1123263.AUKY01000051_gene1073	76.3	1.41e-16	N/A	N/A
structural_annotation	UHGV-1473959_35	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-1473959_36	phrog_8355	102.1	1.9e-30	N/A	unknown function
UniRef90	UHGV-1473959_36	UniRef90_A0A1M6RZ32	108.0	1.68e-28	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1473959_36	1123263.AUKY01000051_gene1072	100.0	4.77e-26	N/A	N/A
Pfam	UHGV-1473959_36	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1473959_36	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1473959_37	phrog_1535	345.8	0	tail length tape measure protein	tail
UniRef90	UHGV-1473959_37	UniRef90_A0A1C5RGR7	466.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1473959_37	33035.JPJF01000093_gene2243	494.0	0	phage tail tape measure protein	N/A
COG	UHGV-1473959_37	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1473959_37	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1473959_38	phrog_1194	92.9	2.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-1473959_38	1415775.U729_2615	67.8	0.000000000000439	N/A	N/A
Pfam	UHGV-1473959_38	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1473959_38	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1473959_39	phrog_23052	118.9	1.3004e-42	N/A	unknown function
eggNOG-mapper	UHGV-1473959_39	946235.CAER01000065_gene2433	135.0	1.59e-30	N/A	N/A
structural_annotation	UHGV-1473959_39	PF05954,PF16532,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1473959_40	phrog_19291	141.8	2.79979e-42	N/A	unknown function
eggNOG-mapper	UHGV-1473959_40	1232449.BAHV02000021_gene1072	231.0	0	N/A	N/A
structural_annotation	UHGV-1473959_40	PF02191,COG3823	N/A	N/A	N/A	N/A
PHROG	UHGV-1473959_41	phrog_21765	40.2	0.000000000017	N/A	unknown function
eggNOG-mapper	UHGV-1473959_41	552398.HMPREF0866_01593	97.4	9.93e-19	tail collar domain protein	N/A
COG	UHGV-1473959_41	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-1473959_42	phrog_199	85.4	6.2e-25	holin	lysis
UniRef90	UHGV-1473959_42	UniRef90_UPI001D02B647	247.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1473959_42	742740.HMPREF9474_02333	180.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1473959_42	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1473959_42	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1473959_42	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1473959_42	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1473959_43	K01447	70.6	2.9e-20	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1473959_43	phrog_15001	435.1	0	endolysin	lysis
UniRef90	UHGV-1473959_43	UniRef90_A0A3C0IHA8	514.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-1473959_43	411473.RUMCAL_03176	451.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
AcrCatalog	UHGV-1473959_43	cluster_53013	268.0	0	NA	N/A
Pfam	UHGV-1473959_43	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1473959_43	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1473959_43	PF01510,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1473959_44	phrog_2158	112.2	3.3e-33	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1473959_44	UniRef90_UPI001D006529	636.0	0	Abi family protein	N/A
eggNOG-mapper	UHGV-1473959_44	888746.HMPREF9180_0753	176.0	0	Abi-like protein	N/A
PADLOC	UHGV-1473959_44	AbiD	60.9	4.5e-18	AbiD	Abi
Pfam	UHGV-1473959_44	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-1473959_44	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-1473959_44	PF07751,COG4823	N/A	N/A	N/A	N/A
KOfam	UHGV-1473959_45	K06400	258.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1473959_45	phrog_95	289.7	0	integrase	integration and excision
UniRef90	UHGV-1473959_45	UniRef90_U2M5Z6	568.0	0	Resolvase protein	N/A
eggNOG-mapper	UHGV-1473959_45	411473.RUMCAL_00465	568.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1473959_45	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1473959_45	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-1473959_45	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1473959_45	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1473959	Yes	40,006	51	96	1
UHGV-1438714	No	37,554	52	91	1
UHGV-1439195	No	37,506	52	90	1
UHGV-1384055	No	36,094	52	89	1
UHGV-1315691	No	26,580	54	65	1
UHGV-1382961	No	23,346	54	59	1
UHGV-1807880	No	12,838	52	31	1
UHGV-0397189	No	11,689	53	30	1
UHGV-1665955	No	11,110	54	29	1