vOTU vOTU-013154

vOTU: vOTU-013154

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-013154
Number of genomes	14
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00089 → vGENUS-01243 → vSUBGEN-42101 → vOTU-013154
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2085988
Biosample ID	N/A
Genome length (bp)	32,877 bps
CheckV completeness	92.80% (High-quality)
CDS count	44
CDS density	93.98%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	336	Host agreement	97.02
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	850	Host agreement	99.53

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 92.8)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2085988_1	K07449	138.9	2.89999e-41	K07449; similar to archaeal holliday junction resolvase and Mrr protein	N/A
PHROG	UHGV-2085988_1	phrog_19856	61.4	4.1e-18	N/A	unknown function
UniRef90	UHGV-2085988_1	UniRef90_A0A356CZV8	427.0	0	Mrr_cat domain-containing protein	N/A
eggNOG-mapper	UHGV-2085988_1	697329.Rumal_1169	167.0	0	Restriction endonuclease	N/A
PADLOC	UHGV-2085988_1	ZorD1_00005	72.7	3.1e-21	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-2085988_1	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-2085988_1	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
PHROG	UHGV-2085988_2	phrog_10292	54.3	5.1e-16	N/A	unknown function
UniRef90	UHGV-2085988_2	UniRef90_R6T9F1	270.0	0	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-2085988_2	537013.CLOSTMETH_02269	85.5	1.56e-19	TM2 domain	N/A
Pfam	UHGV-2085988_2	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-2085988_2	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-2085988_3	K01356	122.8	4.6e-36	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-2085988_3	phrog_4	137.5	1.10001e-40	transcriptional repressor	transcription regulation
UniRef90	UHGV-2085988_3	UniRef90_R6T2B0	434.0	0	Peptidase S24-like protein	N/A
eggNOG-mapper	UHGV-2085988_3	246199.CUS_5911	233.0	0	N/A	N/A
Pfam	UHGV-2085988_3	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
Pfam	UHGV-2085988_3	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-2085988_3	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2085988_3	PF00717,PF12844,MF_00015,TIGR00498,TIGR03070,COG1974,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-2085988_4	UniRef90_R6TEQ2	142.0	2.67648e-43	Conserved domain protein	N/A
eggNOG-mapper	UHGV-2085988_4	246199.CUS_5910	120.0	4.55e-35	N/A	N/A
structural_annotation	UHGV-2085988_4	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_5	phrog_1305	148.7	2.8026e-44	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2085988_5	UniRef90_A0A373SN33	258.0	0	N/A	N/A
eggNOG-mapper	UHGV-2085988_5	445974.CLORAM_02962	181.0	0	N/A	N/A
structural_annotation	UHGV-2085988_5	COG2250	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2085988_6	PF01775,MF_00273,NF010188	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_11	phrog_38338	101.0	1.1e-29	N/A	unknown function
UniRef90	UHGV-2085988_11	UniRef90_UPI00137B3A8C	88.6	9.96e-20	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-2085988_11	693746.OBV_25410	79.7	1.44e-17	N/A	N/A
PHROG	UHGV-2085988_12	phrog_8470	193.2	0	N/A	unknown function
UniRef90	UHGV-2085988_12	UniRef90_UPI0019175B9C	316.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-2085988_12	641112.ACOK01000073_gene2870	406.0	0	PcfJ-like protein	N/A
Pfam	UHGV-2085988_12	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-2085988_12	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_13	phrog_15609	93.8	1.3e-27	N/A	unknown function
UniRef90	UHGV-2085988_13	UniRef90_A0A373SLQ6	502.0	0	N/A	N/A
eggNOG-mapper	UHGV-2085988_13	641112.ACOK01000073_gene2872	86.3	8.67e-17	N/A	N/A
structural_annotation	UHGV-2085988_13	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_14	phrog_253	105.7	3.9e-31	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2085988_14	UniRef90_UPI0019171ADA	115.0	4.3e-29	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-2085988_14	881621.LIV_2167	70.9	0.000000000000486	Siphovirus Gp157	N/A
Pfam	UHGV-2085988_14	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-2085988_14	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_15	phrog_2872	246.3	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2085988_15	UniRef90_A0A373VPJ3	398.0	0	ATP-binding protein (Fragment)	N/A
eggNOG-mapper	UHGV-2085988_15	754027.HMPREF9554_00709	219.0	0	N/A	N/A
Pfam	UHGV-2085988_15	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-2085988_15	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-2085988_16	K19789	326.5	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-2085988_16	phrog_16	281.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2085988_16	UniRef90_A0A356CZA9	901.0	0	Helicase	N/A
eggNOG-mapper	UHGV-2085988_16	1410670.JHXF01000015_gene2270	590.0	0	helicase	N/A
PADLOC	UHGV-2085988_16	mREase_IV_00005	104.6	1.8e-31	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-2085988_16	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-2085988_16	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-2085988_16	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-2085988_16	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_17	phrog_5702	80.4	1.1e-23	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2085988_17	UniRef90_A0A373SNE0	208.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-2085988_17	1410670.JHXF01000015_gene2271	144.0	1.079e-43	VRR_NUC	N/A
Pfam	UHGV-2085988_17	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-2085988_17	PF03838,MF_00130,NF002585,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_18	phrog_378	95.1	9.7e-28	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2085988_18	UniRef90_A0A373SL44	405.0	0	N/A	N/A
eggNOG-mapper	UHGV-2085988_18	1423807.BACO01000050_gene1454	66.2	0.0000000000582	N/A	N/A
Pfam	UHGV-2085988_18	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-2085988_18	PF05037,NF004948	N/A	N/A	N/A	N/A
KOfam	UHGV-2085988_19	K06919	110.4	1.6e-32	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-2085988_19	phrog_1829	860.8	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2085988_19	UniRef90_A0A356CZ91	1550.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-2085988_19	1410670.JHXF01000015_gene2274	841.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-2085988_19	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-2085988_19	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-2085988_19	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-2085988_19	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-2085988_19	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-2085988_19	PF08706,PF05272,PF02257,MF_04000,NF011296,COG3378,COG4983	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_21	phrog_36	62.7	7.1e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-2085988_21	UniRef90_A0A371AT86	57.4	0.000000152	N/A	N/A
KOfam	UHGV-2085988_23	K06909	422.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2085988_23	phrog_18557	160.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-2085988_23	UniRef90_A0A1C6IMR2	1074.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-2085988_23	411461.DORFOR_01162	665.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2085988_23	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-2085988_23	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-2085988_23	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2085988_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2085988_23	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_24	phrog_533	346.1	0	portal protein	head and packaging
UniRef90	UHGV-2085988_24	UniRef90_R6TDI6	889.0	0	Phage portal protein SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-2085988_24	1304866.K413DRAFT_3035	439.0	0	N/A	N/A
structural_annotation	UHGV-2085988_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_25	phrog_581	335.8	0	minor head protein	head and packaging
UniRef90	UHGV-2085988_25	UniRef90_R6SXL7	997.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-2085988_25	658655.HMPREF0988_02563	415.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-2085988_25	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2085988_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2085988_25	PF06152	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2085988_26	PF12305	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_27	phrog_194	100.8	1.6e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-2085988_27	UniRef90_R6U550	376.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-2085988_27	742765.HMPREF9457_02126	154.0	8.40779e-45	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-2085988_27	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-2085988_27	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_28	phrog_544	348.4	0	major head protein	head and packaging
UniRef90	UHGV-2085988_28	UniRef90_R6T873	669.0	0	Major head protein	N/A
eggNOG-mapper	UHGV-2085988_28	936580.HMPREF1516_0718	318.0	0	N/A	N/A
NCBIFam	UHGV-2085988_28	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-2085988_28	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_29	phrog_541	91.8	5.6e-27	head-tail adaptor	connector
UniRef90	UHGV-2085988_29	UniRef90_A0A371AQT0	104.0	1.23e-26	N/A	N/A
eggNOG-mapper	UHGV-2085988_29	1304866.K413DRAFT_3039	96.7	3.51e-24	N/A	N/A
PHROG	UHGV-2085988_30	phrog_3366	76.4	3.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-2085988_30	1449050.JNLE01000003_gene3887	80.1	8.79e-18	N/A	N/A
Pfam	UHGV-2085988_30	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-2085988_30	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_31	phrog_556	121.9	2.3e-36	minor head protein	head and packaging
UniRef90	UHGV-2085988_31	UniRef90_UPI00143BEF55	124.0	9.77e-34	minor capsid protein	N/A
eggNOG-mapper	UHGV-2085988_31	1449050.JNLE01000003_gene3886	106.0	2.56e-27	N/A	N/A
Pfam	UHGV-2085988_31	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-2085988_31	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_32	phrog_3266	123.4	1e-36	tail completion	connector
eggNOG-mapper	UHGV-2085988_32	411902.CLOBOL_00130	112.0	1.08e-29	N/A	N/A
structural_annotation	UHGV-2085988_32	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_33	phrog_3099	148.7	2.66247e-44	N/A	unknown function
eggNOG-mapper	UHGV-2085988_33	1160721.RBI_II00532	206.0	0	N/A	N/A
structural_annotation	UHGV-2085988_33	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_34	phrog_11299	174.9	0	N/A	unknown function
structural_annotation	UHGV-2085988_34	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_35	phrog_706	148.6	3.22299e-44	N/A	unknown function
UniRef90	UHGV-2085988_35	UniRef90_UPI001B3C82AE	208.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-2085988_35	1449050.JNLE01000003_gene3882	195.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2085988_35	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2085988_35	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_36	phrog_1535	274.6	0	tail length tape measure protein	tail
UniRef90	UHGV-2085988_36	UniRef90_R6TDK7	1259.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-2085988_36	1226322.HMPREF1545_00059	395.0	0	tape measure	N/A
COG	UHGV-2085988_36	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-2085988_36	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_37	phrog_1194	89.7	2.5e-26	N/A	unknown function
eggNOG-mapper	UHGV-2085988_37	1160721.RBI_II00527	207.0	0	N/A	N/A
structural_annotation	UHGV-2085988_37	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_38	phrog_6616	54.1	6.9e-25	tail protein	tail
eggNOG-mapper	UHGV-2085988_38	1160721.RBI_II00526	645.0	0	N/A	N/A
structural_annotation	UHGV-2085988_38	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_42	phrog_199	84.6	1.1e-24	holin	lysis
UniRef90	UHGV-2085988_42	UniRef90_A0A5R9MH90	267.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-2085988_42	887325.HMPREF0381_0407	172.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-2085988_42	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-2085988_42	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-2085988_42	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-2085988_42	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-2085988_43	K01447	56.9	4.1e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2085988_43	phrog_7698	163.0	0	endolysin	lysis
UniRef90	UHGV-2085988_43	UniRef90_A0A5R9MKH3	514.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-2085988_43	877411.JMMA01000002_gene2384	190.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-2085988_43	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-2085988_43	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-2085988_43	PF01510,PF18342,MF_04111,NF008758,COG3023,COG3807	N/A	N/A	N/A	N/A
PHROG	UHGV-2085988_44	phrog_4962	149.3	1.26117e-44	N/A	unknown function
UniRef90	UHGV-2085988_44	UniRef90_R6U470	588.0	0	FRG domain protein	N/A
eggNOG-mapper	UHGV-2085988_44	706433.HMPREF9430_01842	110.0	1.35e-25	FRG	N/A
Pfam	UHGV-2085988_44	PF08867	N/A	N/A	FRG domain	FRG
COG	UHGV-2085988_44	COG4127	N/A	N/A	Predicted restriction endonuclease, Mrr-cat superfamily	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2085988	Yes	32,877	45	93	1
UHGV-1440088	No	38,426	44	100	1
UHGV-1553726	No	29,445	46	83	1
UHGV-1527063	No	29,428	46	83	1
UHGV-1395826	No	29,374	46	83	1
UHGV-0082446	No	29,370	46	83	1
UHGV-0289810	No	28,436	46	80	1
UHGV-1542835	No	28,372	46	80	1
UHGV-1499369	No	28,312	46	80	1
UHGV-1376993	No	22,333	46	63	1
UHGV-1519328	No	20,810	45	59	1
UHGV-1396209	No	17,984	46	51	1
UHGV-0383705	No	17,403	46	49	1
UHGV-0376628	No	14,950	45	42	1