vOTU vOTU-013617

vOTU: vOTU-013617

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-013617
Number of genomes	3
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00027 → vSUBFAM-00190 → vGENUS-00840 → vSUBGEN-08456 → vOTU-013617
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0122647
Biosample ID	N/A
Genome length (bp)	47,201 bps
CheckV completeness	94.12% (High-quality)
CDS count	71
CDS density	90.60%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	156	Host agreement	98.08
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 94.12)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0122647_1	phrog_1607	43.7	0.0000000000042	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0122647_1	PF08804	N/A	N/A	N/A	N/A
KOfam	UHGV-0122647_3	K02316	130.6	9.9e-39	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0122647_3	phrog_47	140.3	1.70006e-41	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122647_3	UniRef90_A0A843GN62	303.0	0	Toprim domain-containing protein	N/A
eggNOG-mapper	UHGV-0122647_3	1276257.SSABA_v1c03220	77.8	0.000000000000549	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	N/A
PADLOC	UHGV-0122647_3	drt-UG29	49.3	3.9e-28	DRT	DRT
Pfam	UHGV-0122647_3	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-0122647_3	PF13155	N/A	N/A	Toprim-like	Toprim_2
COG	UHGV-0122647_3	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0122647_3	PF01807,PF13155,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0122647_5	PF06003,MF_01077,NF037951,COG1862	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0122647_7	PF07408,MF_01560,NF010187,COG4838	N/A	N/A	N/A	N/A
PHROG	UHGV-0122647_10	phrog_36	45.9	0.0000000000012	transcriptional regulator	transcription regulation
Pfam	UHGV-0122647_10	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-0122647_10	PF04545,MF_00674,NF008895,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0122647_13	phrog_1220	175.0	0	head protein	head and packaging
eggNOG-mapper	UHGV-0122647_13	536232.CLM_2920	109.0	7.99e-24	N/A	N/A
structural_annotation	UHGV-0122647_13	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0122647_14	phrog_538	186.0	0	minor tail protein	tail
UniRef90	UHGV-0122647_14	UniRef90_A0A843GTT7	164.0	4.30199e-43	Siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0122647_14	1034347.CAHJ01000045_gene552	113.0	2.74e-24	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0122647_14	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0122647_14	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0122647_15	phrog_36410	51.5	0.000000000000011	N/A	unknown function
UniRef90	UHGV-0122647_15	UniRef90_UPI0004A58ADD	84.3	0.00000000000000459	phage tail family protein	N/A
eggNOG-mapper	UHGV-0122647_15	1033738.CAEP01000018_gene3683	77.8	0.000000000000167	Phage tail protein	N/A
COG	UHGV-0122647_15	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0122647_15	PF20753,PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0122647_16	phrog_1533	531.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0122647_16	UniRef90_UPI0003B2F533	449.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0122647_16	1410670.JHXF01000015_gene2302	491.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0122647_16	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0122647_16	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0122647_16	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0122647_16	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-0122647_17	phrog_6541	56.7	2.7e-16	N/A	unknown function
PHROG	UHGV-0122647_18	phrog_6280	125.6	2.7e-37	N/A	unknown function
UniRef90	UHGV-0122647_18	UniRef90_UPI0005425395	107.0	3.47e-27	esterase	N/A
eggNOG-mapper	UHGV-0122647_18	445335.CBN_3078	105.0	3.26e-27	N/A	N/A
PHROG	UHGV-0122647_19	phrog_6686	140.5	9.4994e-42	tail tube protein	tail
UniRef90	UHGV-0122647_19	UniRef90_A0A1C6KI12	175.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0122647_19	748727.CLJU_c31250	101.0	1.03e-22	N/A	N/A
structural_annotation	UHGV-0122647_19	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0122647_20	phrog_7585	77.5	2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0122647_20	445335.CBN_3080	65.1	0.0000000000101	N/A	N/A
structural_annotation	UHGV-0122647_20	PF05657,COG5003	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0122647_21	1443122.Z958_05860	94.7	1.32e-23	N/A	N/A
Pfam	UHGV-0122647_21	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0122647_21	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0122647_22	phrog_8435	59.6	4.7e-17	N/A	unknown function
structural_annotation	UHGV-0122647_22	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0122647_23	phrog_4020	70.6	1.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0122647_23	445335.CBN_3083	67.0	0.000000000000209	N/A	N/A
structural_annotation	UHGV-0122647_24	PF07498	N/A	N/A	N/A	N/A
PHROG	UHGV-0122647_25	phrog_29	254.9	0	major head protein	head and packaging
UniRef90	UHGV-0122647_25	UniRef90_UPI00082C04A5	432.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0122647_25	1158612.I580_01912	320.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0122647_25	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0122647_25	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0122647_26	phrog_909	70.4	2.1e-20	major head protein	head and packaging
UniRef90	UHGV-0122647_26	UniRef90_A0A098MDH2	70.5	0.000000000000452	N/A	N/A
eggNOG-mapper	UHGV-0122647_26	268407.PWYN_15680	70.5	0.0000000000000758	N/A	N/A
structural_annotation	UHGV-0122647_26	PF02924	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0122647_27	1231057.AMGD01000018_gene3620	58.9	0.0000000805	N/A	N/A
structural_annotation	UHGV-0122647_27	MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0122647_29	phrog_1657	209.8	0	head morphogenesis	head and packaging
UniRef90	UHGV-0122647_29	UniRef90_A0A2X2WBI1	155.0	3.54999e-40	Exonuclease SbcC	N/A
eggNOG-mapper	UHGV-0122647_29	748727.CLJU_c31360	146.0	1.91e-37	Portal protein	N/A
COG	UHGV-0122647_29	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
PHROG	UHGV-0122647_30	phrog_64	86.2	2.7e-25	portal protein	head and packaging
UniRef90	UHGV-0122647_30	UniRef90_A0A843GSM3	355.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0122647_30	1211817.CCAT010000049_gene2492	112.0	9.75e-24	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0122647_30	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0122647_31	K07273	147.1	4.34403e-44	acm; lysozyme	N/A
PHROG	UHGV-0122647_31	phrog_291	177.5	0	endolysin	lysis
UniRef90	UHGV-0122647_31	UniRef90_UPI00195EE7EA	214.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0122647_31	1123263.AUKY01000015_gene1625	244.0	0	lyzozyme M1	N/A
Pfam	UHGV-0122647_31	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0122647_31	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-0122647_31	COG1388	N/A	N/A	LysM repeat	N/A
PHROG	UHGV-0122647_32	phrog_443	57.8	3.2e-16	holin	lysis
UniRef90	UHGV-0122647_32	UniRef90_UPI000E5CA950	104.0	9.07e-28	holin	N/A
eggNOG-mapper	UHGV-0122647_32	1235802.C823_05612	84.7	9.25e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0122647_32	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0122647_32	PF16945	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0122647_34	742733.HMPREF9469_00973	60.5	0.00000108	N/A	N/A
structural_annotation	UHGV-0122647_35	PF08948,MF_01537,NF007541,COG3123	N/A	N/A	N/A	N/A
KOfam	UHGV-0122647_37	K06909	315.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0122647_37	phrog_3717	118.3	1.99965e-42	terminase large subunit	head and packaging
UniRef90	UHGV-0122647_37	UniRef90_A0A349YI29	540.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0122647_37	536232.CLM_2529	464.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0122647_37	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0122647_37	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0122647_37	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0122647_37	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0122647_37	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0122647_41	phrog_22292	112.5	2.5e-33	N/A	unknown function
PHROG	UHGV-0122647_43	phrog_842	58.7	1.1e-16	beta-glucosyl-HMC-alpha-glucosyltransferase	other
eggNOG-mapper	UHGV-0122647_43	1236514.BAKL01000015_gene1638	226.0	0	N/A	N/A
Pfam	UHGV-0122647_43	PF20691	N/A	N/A	TET-Associated Glycosyltransferase	TAGT
structural_annotation	UHGV-0122647_43	PF20691,MF_00057,NF038299,COG1216	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0122647_44	1236514.BAKL01000015_gene1639	51.2	0.00000116	ParB-like nuclease domain	N/A
COG	UHGV-0122647_44	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
PHROG	UHGV-0122647_45	phrog_620	132.4	3.3e-39	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122647_45	UniRef90_R7DB88	107.0	1.07e-25	ParB-like protein	N/A
eggNOG-mapper	UHGV-0122647_45	411459.RUMOBE_01044	107.0	1.79e-26	N/A	N/A
PADLOC	UHGV-0122647_45	MTase_II_00015	77.3	3.5e-22	Type II methyltransferase	RM
Pfam	UHGV-0122647_45	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0122647_45	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
PHROG	UHGV-0122647_46	phrog_16126	87.6	1.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-0122647_46	742740.HMPREF9474_02284	52.4	0.000000729	N/A	N/A
PHROG	UHGV-0122647_48	phrog_2412	50.0	0.000000000000042	N/A	unknown function
structural_annotation	UHGV-0122647_50	PF14084	N/A	N/A	N/A	N/A
KOfam	UHGV-0122647_51	K03469	160.0	0	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0122647_51	phrog_531	143.2	1.19951e-42	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122647_51	UniRef90_A0A1M5KFY9	132.0	1.17e-36	Ribonuclease H	N/A
eggNOG-mapper	UHGV-0122647_51	1089553.Tph_c24630	128.0	5.37e-36	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0122647_51	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0122647_51	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0122647_51	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0122647_52	PF10922	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0122647_55	PF21138,NF009630,COG2375	N/A	N/A	N/A	N/A
PHROG	UHGV-0122647_56	phrog_2002	48.4	0.00000000000016	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0122647_56	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0122647_60	phrog_6466	70.3	2.4e-20	DNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122647_60	UniRef90_A0A843GQD5	95.5	2.25e-23	DNA_ligase_aden domain-containing protein	N/A
eggNOG-mapper	UHGV-0122647_60	691965.D4P7L3_9CAUD	61.2	0.00000000161	helicase activity	N/A
AcrCatalog	UHGV-0122647_61	cluster_11486	109.0	9.77e-34	NA	N/A
KOfam	UHGV-0122647_62	K09882	139.6	2.70002e-41	cobS; cobaltochelatase CobS [EC:6.6.1.2]	N/A
PHROG	UHGV-0122647_62	phrog_249	204.4	0	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0122647_62	UniRef90_A0A1W1UZM7	267.0	0	AAA domain (Dynein-related subfamily)	N/A
eggNOG-mapper	UHGV-0122647_62	330395.Q30L55_9CAUD	174.0	0	ATPase activity	N/A
Pfam	UHGV-0122647_62	PF07728	N/A	N/A	AAA domain (dynein-related subfamily)	AAA_5
structural_annotation	UHGV-0122647_62	PF07728,MF_00016,TIGR01650,COG0714	N/A	N/A	N/A	N/A
PHROG	UHGV-0122647_63	phrog_1909	131.3	6.5e-39	N/A	unknown function
eggNOG-mapper	UHGV-0122647_63	1458697.W6E8E8_9CAUD	70.9	0.00000000004	N/A	N/A
PHROG	UHGV-0122647_64	phrog_159	44.8	0.000000000001	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0122647_64	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
KOfam	UHGV-0122647_65	K03427	79.6	4.4e-23	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0122647_65	phrog_5696	259.6	0	N/A	unknown function
UniRef90	UHGV-0122647_65	UniRef90_G5IHT0	203.0	0	N6_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-0122647_65	742733.HMPREF9469_05064	207.0	0	N-6 DNA Methylase	N/A
PADLOC	UHGV-0122647_65	MTase_I_00012	43.8	0.0000000000033	Type I methyltransferase	RM
Pfam	UHGV-0122647_65	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0122647_65	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0122647_65	COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0122647_67	phrog_1706	66.2	4.9e-19	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122647_67	UniRef90_A0A2J0N652	64.3	0.0000000131	PDDEXK_1 domain-containing protein	N/A
COG	UHGV-0122647_67	COG1468	N/A	N/A	CRISPR/Cas system-associated exonuclease Cas4, RecB family	N/A
structural_annotation	UHGV-0122647_67	PF01930,MF_03030,TIGR00372,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0122647_68	K03553	176.2	0	recA; recombination protein RecA	N/A
PHROG	UHGV-0122647_68	phrog_97	176.2	0	UvsX-like recombinase	other
UniRef90	UHGV-0122647_68	UniRef90_UPI00195C3251	148.0	3.01e-38	recombinase RecA	N/A
eggNOG-mapper	UHGV-0122647_68	469616.FMAG_01147	144.0	2.16e-37	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	N/A
Pfam	UHGV-0122647_68	PF00154	N/A	N/A	recA bacterial DNA recombination protein	RecA
COG	UHGV-0122647_68	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0122647_68	PF00154,MF_00268,TIGR02012,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0122647_70	K02337	750.8	0	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	N/A
PHROG	UHGV-0122647_70	phrog_405	679.8	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122647_70	UniRef90_A0A843GPT9	901.0	0	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0122647_70	224324.aq_1008	441.0	0	TIGRFAM DNA polymerase III, alpha subunit	N/A
Pfam	UHGV-0122647_70	PF02811	N/A	N/A	PHP domain	PHP
Pfam	UHGV-0122647_70	PF07733	N/A	N/A	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
Pfam	UHGV-0122647_70	PF17657	N/A	N/A	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
Pfam	UHGV-0122647_70	PF14579	N/A	N/A	Helix-hairpin-helix motif	HHH_6
NCBIFam	UHGV-0122647_70	TIGR00594.1	N/A	N/A	DNA polymerase III subunit alpha	N/A
COG	UHGV-0122647_70	COG0587	N/A	N/A	DNA polymerase III, alpha subunit	N/A
structural_annotation	UHGV-0122647_70	PF07733,PF02811,PF17657,PF14579,MF_01902,TIGR00594,COG0587	N/A	N/A	N/A	N/A
KOfam	UHGV-0122647_71	K00571	97.2	2.3e-28	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0122647_71	phrog_67	102.1	5.3e-30	DNA methyltransferase	other
UniRef90	UHGV-0122647_71	UniRef90_A0A843GWB2	209.0	0	Type II methyltransferase	N/A
eggNOG-mapper	UHGV-0122647_71	182217.HCW_02255	73.9	0.000000000000785	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0122647_71	MTase_II_00157	108.9	1.1e-31	Type II methyltransferase	RM
Pfam	UHGV-0122647_71	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0122647_71	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0122647_71	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0122647	Yes	47,201	36	94	1
UHGV-1496830	No	47,078	36	94	1
UHGV-1450328	No	44,846	36	89	1