vOTU vOTU-013812

vOTU: vOTU-013812

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-013812
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-01787 → vGENUS-01936 → vSUBGEN-07935 → vOTU-013812
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella sp900550455
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1532349
Biosample ID	SAMEA2738069
Genome length (bp)	39,401 bps
CheckV completeness	99.90% (High-quality)
CDS count	52
CDS density	94.12%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella sp900550455	Total connections	4	Host agreement	75
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1532349_1	phrog_18860	67.9	1.2e-19	N/A	unknown function
KOfam	UHGV-1532349_2	K07273	120.5	2e-35	acm; lysozyme	N/A
PHROG	UHGV-1532349_2	phrog_291	92.8	4.9e-27	endolysin	lysis
UniRef90	UHGV-1532349_2	UniRef90_UPI001D073E26	326.0	0	glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-1532349_2	1273103.NM10_03031	96.3	4.97e-22	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1532349_2	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1532349_2	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1532349_2	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1532349_3	phrog_27828	148.0	2.10195e-44	N/A	unknown function
UniRef90	UHGV-1532349_3	UniRef90_F5KZP5	117.0	1.22e-31	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1532349_3	546273.VEIDISOL_00738	130.0	2.3e-37	N/A	N/A
eggNOG-mapper	UHGV-1532349_7	1401067.HMPREF0872_07835	167.0	5.67526e-43	N/A	N/A
structural_annotation	UHGV-1532349_7	PF03906,NF012201,COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-1532349_8	phrog_9880	305.7	0	N/A	unknown function
UniRef90	UHGV-1532349_8	UniRef90_A0A239Z8B8	1872.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1532349_8	699218.HMPREF0889_0277	488.0	0	N/A	N/A
Pfam	UHGV-1532349_8	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-1532349_8	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UniRef90	UHGV-1532349_9	UniRef90_A0A2S7ZGT8	358.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-1532349_9	1401067.HMPREF0872_06760	80.5	0.00000000000102	N/A	N/A
Pfam	UHGV-1532349_9	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
structural_annotation	UHGV-1532349_9	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-1532349_10	phrog_418	52.2	0.000000000000011	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1532349_10	1401067.HMPREF0872_06765	267.0	0	N/A	N/A
structural_annotation	UHGV-1532349_10	PF05384,TIGR01010,COG3524	N/A	N/A	N/A	N/A
PHROG	UHGV-1532349_11	phrog_308	87.0	2.2e-25	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1532349_11	1220601.L7TJ86_9CAUD	51.2	0.00000645	N/A	N/A
structural_annotation	UHGV-1532349_11	PF11039,MF_02210,NF000165,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-1532349_12	phrog_376	609.5	0	tail protein	tail
eggNOG-mapper	UHGV-1532349_12	1401067.HMPREF0872_06775	1218.0	0	N/A	N/A
structural_annotation	UHGV-1532349_12	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-1532349_13	phrog_394	165.7	0	tail protein	tail
eggNOG-mapper	UHGV-1532349_13	1401067.HMPREF0872_06780	343.0	0	N/A	N/A
structural_annotation	UHGV-1532349_13	PF17212	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1532349_15	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-1532349_16	phrog_212	262.0	0	major head protein	head and packaging
UniRef90	UHGV-1532349_16	UniRef90_A0A0B2JTD7	395.0	0	N/A	N/A
eggNOG-mapper	UHGV-1532349_16	1401067.HMPREF0872_06795	633.0	0	N/A	N/A
Pfam	UHGV-1532349_16	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-1532349_16	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1532349_17	phrog_458	118.0	1.1e-34	protease	other
UniRef90	UHGV-1532349_17	UniRef90_UPI0019E883D9	83.6	2.94e-16	peptidase	N/A
eggNOG-mapper	UHGV-1532349_17	1401067.HMPREF0872_06800	268.0	0	N/A	N/A
PHROG	UHGV-1532349_18	phrog_528	78.8	3.3e-23	N/A	unknown function
UniRef90	UHGV-1532349_18	UniRef90_A0A8E8TUT9	59.3	0.00000000502	Endopeptidase	N/A
eggNOG-mapper	UHGV-1532349_18	1401067.HMPREF0872_06805	182.0	0	N/A	N/A
PHROG	UHGV-1532349_19	phrog_21643	210.7	0	N/A	unknown function
UniRef90	UHGV-1532349_19	UniRef90_UPI001E3C3D59	119.0	8.59e-30	portal protein	N/A
eggNOG-mapper	UHGV-1532349_19	1401067.HMPREF0872_06810	323.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-1532349_19	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
PHROG	UHGV-1532349_20	phrog_332	260.7	0	head-tail adaptor	connector
UniRef90	UHGV-1532349_20	UniRef90_A0A239Z979	399.0	0	Bacteriophage head to tail connecting protein	N/A
eggNOG-mapper	UHGV-1532349_20	1401067.HMPREF0872_06810	639.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-1532349_20	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
KOfam	UHGV-1532349_22	K06909	99.9	3.5e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1532349_22	phrog_2	164.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-1532349_22	UniRef90_UPI001D00EC11	552.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1532349_22	1401067.HMPREF0872_06820	844.0	0	Terminase-like family	N/A
Pfam	UHGV-1532349_22	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1532349_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1532349_22	PF03237,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-1532349_23	phrog_4102	67.0	3.8e-19	terminase small subunit	head and packaging
PHROG	UHGV-1532349_25	phrog_36	55.1	0.0000000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-1532349_25	UniRef90_A0A6N2ZMD2	56.6	0.000000355	Sigma-70, region 4	N/A
structural_annotation	UHGV-1532349_25	PF07374,TIGR02984	N/A	N/A	N/A	N/A
KOfam	UHGV-1532349_26	K01160	58.2	2.6e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1532349_26	phrog_140	108.3	6.8e-32	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1532349_26	UniRef90_A0A1C6K6Q7	92.0	3.02e-21	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-1532349_26	93220.LV28_24675	86.3	1.64e-19	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1532349_26	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1532349_26	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1532349_26	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1532349_27	K03111	142.1	6.00036e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1532349_27	phrog_44	121.6	6.9e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1532349_27	UniRef90_A0A833C9R6	185.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1532349_27	879309.HMPREF9199_0149	177.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1532349_27	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1532349_27	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1532349_27	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1532349_27	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1532349_27	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1532349_29	phrog_599	48.0	0.00000000000026	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-1532349_29	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1532349_29	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1532349_29	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
KOfam	UHGV-1532349_31	K22300	41.4	0.00000000003	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1532349_31	phrog_1689	68.0	1.5e-19	nucleotide kinase	other
UniRef90	UHGV-1532349_31	UniRef90_A0A143YJD9	59.3	0.0000000638	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1532349_31	883112.HMPREF9707_01487	56.6	0.000000105	Helix-turn-helix	N/A
Pfam	UHGV-1532349_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1532349_31	PF11753	N/A	N/A	N/A	DUF3310
COG	UHGV-1532349_31	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-1532349_32	phrog_1271	47.0	0.00000000000045	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1532349_32	UniRef90_A0A2I7RV04	154.0	7.14662e-43	HNH nuclease	N/A
eggNOG-mapper	UHGV-1532349_32	552525.B5LPN5_9CAUD	87.0	1.37e-18	HNH endonuclease	N/A
Pfam	UHGV-1532349_32	PF06467	N/A	N/A	MYM-type Zinc finger with FCS sequence motif	zf-FCS
Pfam	UHGV-1532349_32	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1532349_32	PF13392	N/A	N/A	N/A	N/A
KOfam	UHGV-1532349_33	K01520	55.8	8.7e-16	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1532349_33	phrog_135	65.1	1.3e-18	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1532349_33	UniRef90_A0A7X7AN00	85.9	3.55e-20	dUTP diphosphatase (Fragment)	N/A
eggNOG-mapper	UHGV-1532349_33	626939.HMPREF9443_01785	73.9	0.00000000000000139	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	N/A
Pfam	UHGV-1532349_33	PF00692	N/A	N/A	dUTPase	dUTPase
COG	UHGV-1532349_33	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
PHROG	UHGV-1532349_36	phrog_9804	63.6	3.2e-18	N/A	unknown function
structural_annotation	UHGV-1532349_36	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1532349_37	phrog_186	90.9	1.9e-26	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1532349_37	UniRef90_UPI0003FCA6D4	80.1	0.0000000000000238	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1532349_37	218284.CCDN010000001_gene904	74.3	0.00000000000073	Replication initiation and membrane attachment	N/A
Pfam	UHGV-1532349_37	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
Pfam	UHGV-1532349_37	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
COG	UHGV-1532349_37	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1532349_37	PF04492,MF_01911,NF040939,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-1532349_39	phrog_72	53.4	0.0000000000000024	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1532349_39	445972.ANACOL_01825	94.0	9.43e-22	N/A	N/A
PHROG	UHGV-1532349_40	phrog_2324	181.4	0	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1532349_40	UniRef90_UPI001402D75D	220.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1532349_40	1209989.TepiRe1_1126	152.0	4.48416e-44	ERF superfamily	N/A
Pfam	UHGV-1532349_40	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1532349_40	PF04404,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-1532349_41	phrog_674	59.6	3.9e-17	N/A	unknown function
UniRef90	UHGV-1532349_41	UniRef90_UPI000E71DE97	224.0	0	N/A	N/A
Pfam	UHGV-1532349_41	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1532349_41	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-1532349_43	K19232	123.7	1.3e-36	btaE; hyaluronate-binding autotransporter adhesin	N/A
UniRef90	UHGV-1532349_43	UniRef90_C4FP75	227.0	0	Hep/Hag repeat protein	N/A
eggNOG-mapper	UHGV-1532349_43	546273.VEIDISOL_00699	227.0	0	Hep Hag repeat protein	N/A
Pfam	UHGV-1532349_43	PF05662	N/A	N/A	Coiled stalk of trimeric autotransporter adhesin	YadA_stalk
Pfam	UHGV-1532349_43	PF03895	N/A	N/A	YadA-like membrane anchor domain	YadA_anchor
COG	UHGV-1532349_43	COG5295	N/A	N/A	Autotransporter adhesin	N/A
structural_annotation	UHGV-1532349_43	PF03895,NF040984,COG5295	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1532349_45	PF12728,TIGR01764	N/A	N/A	N/A	N/A
UniRef90	UHGV-1532349_47	UniRef90_UPI000D0ECDD8	72.0	0.0000000000000031	N/A	N/A
eggNOG-mapper	UHGV-1532349_47	1121335.Clst_0370	63.5	0.000000000001	N/A	N/A
Pfam	UHGV-1532349_47	PF02954	N/A	N/A	Bacterial regulatory protein, Fis family	HTH_8
structural_annotation	UHGV-1532349_47	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1532349_48	K22299	59.8	7e-17	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1532349_48	phrog_8	72.3	9.7e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-1532349_48	UniRef90_UPI00195FB8BD	126.0	4.56e-35	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1532349_48	1111454.HMPREF1250_1030	116.0	6.99e-32	Helix-turn-helix domain protein	N/A
Pfam	UHGV-1532349_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1532349_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1532349_48	PF13560,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1532349_49	phrog_20936	108.5	3.1e-32	N/A	unknown function
UniRef90	UHGV-1532349_49	UniRef90_UPI000F8E443B	117.0	1.18e-32	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1532349_49	706434.HMPREF9429_00182	56.6	0.00000000196	N/A	N/A
Pfam	UHGV-1532349_49	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-1532349_49	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-1532349_51	K14059	122.9	4.5e-36	int; integrase	N/A
PHROG	UHGV-1532349_51	phrog_1	135.7	4.2e-40	integrase	integration and excision
UniRef90	UHGV-1532349_51	UniRef90_UPI001EF5E62B	309.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1532349_51	883156.HMPREF9282_00919	275.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1532349_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1532349_51	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1532349_51	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1532349_52	1401067.HMPREF0872_09000	52.4	0.000000211	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1532349	Yes	39,401	42	100	1
UHGV-1514371	No	36,951	42	94	1