vOTU vOTU-013968

vOTU: vOTU-013968

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-013968
Number of genomes	4
Taxonomy (ICTV)	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → CAG-582
Taxonomy (UHGV)	vFAM-00025 → vSUBFAM-06588 → vGENUS-16817 → vSUBGEN-30697 → vOTU-013968
Host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660
Host range breadth	Family
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-1529787
Biosample ID	N/A
Genome length (bp)	38,892 bps
CheckV completeness	99.90% (High-quality)
CDS count	62
CDS density	92.81%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660	Total connections	16	Host agreement	81.25
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → CAG-582	Total connections	6	Host agreement	83.33

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1529787_2	phrog_24267	70.2	3.3e-20	N/A	unknown function
UniRef90	UHGV-1529787_2	UniRef90_R5LPM8	72.8	0.0000000000000736	Putative truncated prophage LambdaSa1 minor structural protein	N/A
eggNOG-mapper	UHGV-1529787_2	508419.F8J176_9CAUD	101.0	4.62e-23	peptidoglycan catabolic process	N/A
structural_annotation	UHGV-1529787_2	COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-1529787_3	phrog_24267	68.1	1.5e-19	N/A	unknown function
UniRef90	UHGV-1529787_3	UniRef90_A0A809PN99	65.5	0.000000000139	Microcystin dependent MdpB family protein	N/A
eggNOG-mapper	UHGV-1529787_3	742742.HMPREF9452_00376	110.0	2.78e-29	tail collar domain protein	N/A
COG	UHGV-1529787_3	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1529787_3	COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-1529787_4	phrog_24267	70.1	3.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-1529787_4	742742.HMPREF9452_00376	110.0	1.43e-29	tail collar domain protein	N/A
COG	UHGV-1529787_4	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1529787_4	COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-1529787_5	phrog_372	110.1	1.1e-32	tail protein	tail
eggNOG-mapper	UHGV-1529787_5	1507.HMPREF0262_01190	85.5	0.0000000000000215	N/A	N/A
COG	UHGV-1529787_5	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1529787_5	PF05895,MF_04116,NF010681,COG3401	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1529787_6	1121333.JMLH01000047_gene1007	122.0	6.88e-26	N/A	N/A
structural_annotation	UHGV-1529787_6	PF16466,TIGR03361,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1529787_7	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
KOfam	UHGV-1529787_8	K20361	41.9	0.0000000000061	USO1; intracellular protein transport protein USO1	N/A
PHROG	UHGV-1529787_8	phrog_1535	125.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1529787_8	693746.OBV_18190	86.7	0.0000000000000215	domain protein	N/A
COG	UHGV-1529787_8	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1529787_9	phrog_706	143.4	1.3004e-42	N/A	unknown function
UniRef90	UHGV-1529787_9	UniRef90_A0A1V6D632	146.0	5.51999e-41	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1529787_9	1232449.BAHV02000010_gene2722	120.0	8.06e-32	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1529787_9	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1529787_9	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1529787_10	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1529787_11	phrog_3099	83.6	2.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-1529787_11	1232449.BAHV02000010_gene2720	73.9	0.000000000000033	N/A	N/A
structural_annotation	UHGV-1529787_11	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1529787_12	phrog_3266	63.3	3.3e-18	tail completion	connector
eggNOG-mapper	UHGV-1529787_12	632245.CLP_1653	54.3	0.000000338	N/A	N/A
structural_annotation	UHGV-1529787_12	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1529787_13	phrog_556	50.4	0.000000000000029	minor head protein	head and packaging
UniRef90	UHGV-1529787_13	UniRef90_UPI001D069E73	101.0	9.92e-25	minor capsid protein	N/A
eggNOG-mapper	UHGV-1529787_13	476272.RUMHYD_01780	72.0	0.0000000000000489	N/A	N/A
structural_annotation	UHGV-1529787_13	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1529787_14	phrog_3366	52.5	0.0000000000000093	N/A	unknown function
structural_annotation	UHGV-1529787_14	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-1529787_15	phrog_541	88.7	5.2e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-1529787_15	1449050.JNLE01000003_gene3888	78.2	7.11e-17	N/A	N/A
PHROG	UHGV-1529787_17	phrog_422	185.0	0	major head protein	head and packaging
UniRef90	UHGV-1529787_17	UniRef90_A0A345MKD0	274.0	0	Main capsid protein	N/A
eggNOG-mapper	UHGV-1529787_17	665956.HMPREF1032_02951	257.0	0	N/A	N/A
structural_annotation	UHGV-1529787_17	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1529787_18	632245.CLP_1647	53.5	0.00000414	N/A	N/A
PHROG	UHGV-1529787_19	phrog_581	221.9	0	minor head protein	head and packaging
UniRef90	UHGV-1529787_19	UniRef90_R5XZV2	228.0	0	Protein gp4	N/A
eggNOG-mapper	UHGV-1529787_19	642492.Clole_0816	148.0	4.79e-36	N/A	N/A
Pfam	UHGV-1529787_19	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-1529787_19	PF18810	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
COG	UHGV-1529787_19	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1529787_20	phrog_533	285.5	0	portal protein	head and packaging
UniRef90	UHGV-1529787_20	UniRef90_R6Y8H1	441.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1529787_20	545697.HMPREF0216_02845	324.0	0	N/A	N/A
structural_annotation	UHGV-1529787_20	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1529787_21	K06909	207.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1529787_21	phrog_10250	116.6	1.5e-34	N/A	unknown function
UniRef90	UHGV-1529787_21	UniRef90_A0A3B8SL24	675.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1529787_21	428127.EUBDOL_01229	538.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1529787_21	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1529787_21	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1529787_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1529787_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1529787_21	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1529787_22	phrog_309	163.0	0	terminase small subunit	head and packaging
UniRef90	UHGV-1529787_22	UniRef90_UPI000AC737F1	172.0	0	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-1529787_22	649747.HMPREF0083_05320	156.0	0	transposase activity	N/A
Pfam	UHGV-1529787_22	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
COG	UHGV-1529787_22	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1529787_22	PF07141	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1529787_28	PF09871,TIGR00739	N/A	N/A	N/A	N/A
PHROG	UHGV-1529787_29	phrog_625	77.8	9.8e-23	N/A	unknown function
UniRef90	UHGV-1529787_29	UniRef90_A0A373D1H8	121.0	1.79e-33	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1529787_29	1235800.C819_02245	108.0	3.49e-29	N/A	N/A
structural_annotation	UHGV-1529787_29	PF12961	N/A	N/A	N/A	N/A
PHROG	UHGV-1529787_37	phrog_8470	144.8	4.62428e-44	N/A	unknown function
UniRef90	UHGV-1529787_37	UniRef90_A0A238ZSA1	103.0	6.01e-20	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-1529787_37	1235802.C823_00341	77.0	0.00000000000428	PcfJ-like protein	N/A
Pfam	UHGV-1529787_37	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1529787_37	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1529787_38	phrog_7445	58.0	1.6e-16	N/A	unknown function
UniRef90	UHGV-1529787_38	UniRef90_A0A318KCJ7	67.0	0.00000000000858	PcfK-like protein	N/A
eggNOG-mapper	UHGV-1529787_38	1232449.BAHV02000018_gene1541	66.2	0.00000000000468	PcfK-like protein	N/A
Pfam	UHGV-1529787_38	PF14058	N/A	N/A	PcfK-like protein	PcfK
structural_annotation	UHGV-1529787_38	PF14058	N/A	N/A	N/A	N/A
PHROG	UHGV-1529787_40	phrog_72	50.2	0.000000000000027	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1529787_40	UniRef90_UPI000C7BF263	122.0	2.53e-32	recombination protein NinB	N/A
eggNOG-mapper	UHGV-1529787_40	445972.ANACOL_01825	122.0	7.52e-33	N/A	N/A
structural_annotation	UHGV-1529787_40	PF05772,NF007281	N/A	N/A	N/A	N/A
KOfam	UHGV-1529787_41	K03111	131.5	9.3e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1529787_41	phrog_44	140.9	7.29936e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1529787_41	UniRef90_R5MS63	147.0	1.26958e-42	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1529787_41	1541959.KQ51_00118	137.0	1.09e-39	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1529787_41	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1529787_41	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1529787_41	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1529787_41	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1529787_41	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1529787_42	phrog_478	120.9	5.4e-36	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1529787_42	UniRef90_A0A376GT60	100.0	1.51e-24	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-1529787_42	1123302.KB904167_gene507	97.8	2.05e-24	N/A	N/A
Pfam	UHGV-1529787_43	PF07963	N/A	N/A	Prokaryotic N-terminal methylation motif	N_methyl
NCBIFam	UHGV-1529787_43	TIGR02532.1	N/A	N/A	prepilin-type N-terminal cleavage/methylation domain-containing protein	N/A
structural_annotation	UHGV-1529787_44	PF14001,MF_01194,TIGR03318,COG5475	N/A	N/A	N/A	N/A
PHROG	UHGV-1529787_46	phrog_392	110.8	1.6e-32	metal-dependent hydrolase	other
UniRef90	UHGV-1529787_46	UniRef90_A0A7X8XIL0	235.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1529787_46	665956.HMPREF1032_03101	178.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-1529787_46	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-1529787_46	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1529787_46	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
KOfam	UHGV-1529787_47	K07455	181.2	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1529787_47	phrog_148	205.6	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1529787_47	UniRef90_A0A355KWE4	342.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1529787_47	428127.EUBDOL_01509	335.0	0	RecT family	N/A
Pfam	UHGV-1529787_47	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1529787_47	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1529787_47	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1529787_47	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1529787_48	phrog_674	115.2	5.2e-34	N/A	unknown function
UniRef90	UHGV-1529787_48	UniRef90_A0A7X9AE52	130.0	1.4e-32	N/A	N/A
eggNOG-mapper	UHGV-1529787_48	665956.HMPREF1032_03103	118.0	1.82e-28	N/A	N/A
Pfam	UHGV-1529787_48	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1529787_48	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1529787_50	phrog_1123	44.6	0.0000000000021	N/A	unknown function
UniRef90	UHGV-1529787_50	UniRef90_A0A7X6P6Q9	53.9	0.000000357	DNA gyrase	N/A
eggNOG-mapper	UHGV-1529787_50	1560313.A0A0D3MSU0_9CAUD	58.2	0.00000000138	N/A	N/A
Pfam	UHGV-1529787_50	PF08461	N/A	N/A	Ribonuclease R winged-helix domain	HTH_12
structural_annotation	UHGV-1529787_50	PF03551,TIGR02719,COG1695	N/A	N/A	N/A	N/A
KOfam	UHGV-1529787_51	K02086	45.6	0.000000000001	dnaD; DNA replication protein	N/A
PHROG	UHGV-1529787_51	phrog_2514	101.5	8.8e-30	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1529787_51	642492.Clole_1479	137.0	3.79e-36	DnaD domain protein	N/A
Pfam	UHGV-1529787_51	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1529787_51	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1529787_51	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1529787_51	PF08222,NF033788,COG4901	N/A	N/A	N/A	N/A
PHROG	UHGV-1529787_53	phrog_989	41.2	0.000000000014	N/A	unknown function
UniRef90	UHGV-1529787_55	UniRef90_R6WN44	51.6	0.00000608	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1529787_55	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1529787_56	PF20385	N/A	N/A	N/A	N/A
Pfam	UHGV-1529787_57	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1529787_57	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1529787_57	PF13560,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1529787_58	K23779	48.2	0.00000000000024	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-1529787_58	phrog_8	47.6	0.00000000000036	transcriptional regulator	transcription regulation
UniRef90	UHGV-1529787_58	UniRef90_A0A350H3V4	76.6	0.00000000000000331	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1529787_58	313594.PI23P_08025	55.1	0.000000266	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1529787_58	Control_protein_00002	48.2	0.00000000000021	control protein	RM
Pfam	UHGV-1529787_58	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1529787_58	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1529787_58	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1529787_59	UniRef90_A0A3B8SNC0	142.0	5.34035e-42	Peptidase_M78 domain-containing protein	N/A
Pfam	UHGV-1529787_59	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-1529787_59	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1529787_60	K14059	193.2	0	int; integrase	N/A
PHROG	UHGV-1529787_60	phrog_1	182.4	0	integrase	integration and excision
UniRef90	UHGV-1529787_60	UniRef90_R5A639	372.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1529787_60	1238184.CM001792_gene640	121.0	2.88e-28	Phage integrase family	N/A
Pfam	UHGV-1529787_60	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1529787_60	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1529787_60	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1529787_62	K06400	332.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1529787_62	phrog_95	352.3	0	integrase	integration and excision
UniRef90	UHGV-1529787_62	UniRef90_K1RRL8	895.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1529787_62	749413.E5DV73_9VIRU	189.0	0	recombinase activity	N/A
Pfam	UHGV-1529787_62	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1529787_62	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1529787_62	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
structural_annotation	UHGV-1529787_62	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1529787	Yes	38,892	27	100	1
UHGV-0000894	No	33,496	28	91	1
UHGV-0010464	No	33,041	28	90	1
UHGV-0025907	No	18,418	28	50	1