vOTU vOTU-014394

vOTU: vOTU-014394

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-014394
Number of genomes	13
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00089 → vGENUS-01243 → vSUBGEN-25424 → vOTU-014394
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2061722
Biosample ID	SAMN05971577
Genome length (bp)	36,235 bps
CheckV completeness	99.90% (High-quality)
CDS count	49
CDS density	95.22%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	563	Host agreement	96.63
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	775	Host agreement	99.74

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2061722_1	phrog_10292	54.3	5e-16	N/A	unknown function
UniRef90	UHGV-2061722_1	UniRef90_R6T9F1	270.0	0	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-2061722_1	537013.CLOSTMETH_02269	85.5	1.56e-19	TM2 domain	N/A
Pfam	UHGV-2061722_1	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-2061722_1	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-2061722_2	K01356	122.7	4.5e-36	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-2061722_2	phrog_4	137.2	1.3e-40	transcriptional repressor	transcription regulation
UniRef90	UHGV-2061722_2	UniRef90_R6T2B0	434.0	0	Peptidase S24-like protein	N/A
eggNOG-mapper	UHGV-2061722_2	246199.CUS_5911	233.0	0	N/A	N/A
Pfam	UHGV-2061722_2	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
Pfam	UHGV-2061722_2	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-2061722_2	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2061722_2	PF00717,PF12844,MF_00015,TIGR00498,TIGR03070,COG1974,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-2061722_3	UniRef90_R6TEQ2	142.0	2.67648e-43	Conserved domain protein	N/A
eggNOG-mapper	UHGV-2061722_3	246199.CUS_5910	120.0	4.55e-35	N/A	N/A
structural_annotation	UHGV-2061722_3	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_5	phrog_9576	74.7	1.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-2061722_5	1159488.SEQMU2_02040	77.8	2.29e-17	N/A	N/A
PHROG	UHGV-2061722_11	phrog_38338	99.1	3.9e-29	N/A	unknown function
UniRef90	UHGV-2061722_11	UniRef90_UPI00137B3A8C	89.0	7.05e-20	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-2061722_11	641112.ACOK01000073_gene2869	90.5	6.33e-22	N/A	N/A
PHROG	UHGV-2061722_12	phrog_8470	196.8	0	N/A	unknown function
UniRef90	UHGV-2061722_12	UniRef90_UPI0019175B9C	313.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-2061722_12	641112.ACOK01000073_gene2870	405.0	0	PcfJ-like protein	N/A
Pfam	UHGV-2061722_12	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-2061722_12	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_13	phrog_15609	84.7	4.9e-25	N/A	unknown function
UniRef90	UHGV-2061722_13	UniRef90_A0A373SLQ6	439.0	0	N/A	N/A
eggNOG-mapper	UHGV-2061722_13	641112.ACOK01000073_gene2872	106.0	3.54e-24	N/A	N/A
structural_annotation	UHGV-2061722_13	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_14	phrog_253	111.6	5.6e-33	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2061722_14	UniRef90_UPI0019171ADA	117.0	7.66e-30	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-2061722_14	881621.LIV_2167	75.5	0.0000000000000084	Siphovirus Gp157	N/A
Pfam	UHGV-2061722_14	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-2061722_14	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_15	phrog_2872	246.1	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2061722_15	UniRef90_A0A373VPJ3	399.0	0	ATP-binding protein (Fragment)	N/A
eggNOG-mapper	UHGV-2061722_15	754027.HMPREF9554_00709	218.0	0	N/A	N/A
Pfam	UHGV-2061722_15	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-2061722_15	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-2061722_16	K19789	326.5	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-2061722_16	phrog_16	281.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2061722_16	UniRef90_A0A356CZA9	899.0	0	Helicase	N/A
eggNOG-mapper	UHGV-2061722_16	1410670.JHXF01000015_gene2270	593.0	0	helicase	N/A
PADLOC	UHGV-2061722_16	mREase_IV_00005	107.1	3.3e-32	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-2061722_16	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-2061722_16	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-2061722_16	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-2061722_16	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_17	phrog_5702	80.6	8.7e-24	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2061722_17	UniRef90_A0A373SNE0	208.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-2061722_17	1410670.JHXF01000015_gene2271	140.0	3.60974e-42	VRR_NUC	N/A
Pfam	UHGV-2061722_17	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-2061722_17	PF03838,MF_00130,NF002585,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_18	phrog_378	96.0	4.9e-28	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2061722_18	UniRef90_A0A373SL44	375.0	0	N/A	N/A
eggNOG-mapper	UHGV-2061722_18	1423807.BACO01000050_gene1454	75.5	0.0000000000000177	N/A	N/A
Pfam	UHGV-2061722_18	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-2061722_18	PF05037,NF004948	N/A	N/A	N/A	N/A
KOfam	UHGV-2061722_19	K06919	110.2	1.8e-32	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-2061722_19	phrog_1829	851.6	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2061722_19	UniRef90_A0A356CZ91	1523.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-2061722_19	1410670.JHXF01000015_gene2274	845.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-2061722_19	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-2061722_19	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-2061722_19	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-2061722_19	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-2061722_19	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-2061722_19	PF08706,PF05272,PF02257,MF_04000,NF011296,COG3378,COG4983	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2061722_21	PF07374,TIGR01636	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2061722_22	515620.EUBELI_20304	280.0	0	N/A	N/A
structural_annotation	UHGV-2061722_22	MF_00637,TIGR01925,COG2172	N/A	N/A	N/A	N/A
UniRef90	UHGV-2061722_23	UniRef90_C4Z656	91.3	4.29e-22	N/A	N/A
structural_annotation	UHGV-2061722_23	PF14213	N/A	N/A	N/A	N/A
KOfam	UHGV-2061722_25	K06909	419.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2061722_25	phrog_18557	160.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-2061722_25	UniRef90_A0A1C6IMR2	1101.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-2061722_25	411461.DORFOR_01162	665.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2061722_25	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-2061722_25	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-2061722_25	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2061722_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2061722_25	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_26	phrog_533	347.1	0	portal protein	head and packaging
UniRef90	UHGV-2061722_26	UniRef90_R6TDI6	888.0	0	Phage portal protein SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-2061722_26	1304866.K413DRAFT_3035	440.0	0	N/A	N/A
structural_annotation	UHGV-2061722_26	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_27	phrog_581	334.3	0	minor head protein	head and packaging
UniRef90	UHGV-2061722_27	UniRef90_R6SXL7	992.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-2061722_27	658655.HMPREF0988_02563	409.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-2061722_27	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2061722_27	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2061722_27	PF06152	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2061722_28	PF12305	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_29	phrog_194	101.9	7.3e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-2061722_29	UniRef90_R6U550	377.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-2061722_29	742765.HMPREF9457_02126	154.0	8.40779e-45	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-2061722_29	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-2061722_29	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_30	phrog_544	342.5	0	major head protein	head and packaging
UniRef90	UHGV-2061722_30	UniRef90_R6T873	665.0	0	Major head protein	N/A
eggNOG-mapper	UHGV-2061722_30	936580.HMPREF1516_0718	311.0	0	N/A	N/A
NCBIFam	UHGV-2061722_30	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-2061722_30	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_31	phrog_541	94.3	9.9e-28	head-tail adaptor	connector
UniRef90	UHGV-2061722_31	UniRef90_A0A371AQT0	105.0	6.14e-27	N/A	N/A
eggNOG-mapper	UHGV-2061722_31	1304866.K413DRAFT_3039	95.9	7.04e-24	N/A	N/A
PHROG	UHGV-2061722_32	phrog_3366	74.5	1.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-2061722_32	1449050.JNLE01000003_gene3887	82.4	1.09e-18	N/A	N/A
Pfam	UHGV-2061722_32	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-2061722_32	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_33	phrog_556	123.7	6.3e-37	minor head protein	head and packaging
UniRef90	UHGV-2061722_33	UniRef90_A0A1M7NJ72	125.0	4.86e-34	Minor capsid protein	N/A
eggNOG-mapper	UHGV-2061722_33	1449050.JNLE01000003_gene3886	107.0	6.37e-28	N/A	N/A
Pfam	UHGV-2061722_33	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-2061722_33	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_34	phrog_3266	122.6	1.9e-36	tail completion	connector
eggNOG-mapper	UHGV-2061722_34	411902.CLOBOL_00130	111.0	3.08e-29	N/A	N/A
structural_annotation	UHGV-2061722_34	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_35	phrog_3099	153.8	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-2061722_35	1160721.RBI_II00532	209.0	0	N/A	N/A
structural_annotation	UHGV-2061722_35	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_36	phrog_11299	181.1	0	N/A	unknown function
structural_annotation	UHGV-2061722_36	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_37	phrog_706	143.6	1.10002e-42	N/A	unknown function
UniRef90	UHGV-2061722_37	UniRef90_UPI001B3C82AE	214.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-2061722_37	1160721.RBI_II00530	194.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2061722_37	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2061722_37	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_38	phrog_1535	304.9	0	tail length tape measure protein	tail
UniRef90	UHGV-2061722_38	UniRef90_R6TDK7	1227.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-2061722_38	1226322.HMPREF1545_00059	379.0	0	tape measure	N/A
COG	UHGV-2061722_38	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-2061722_38	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_39	phrog_1194	89.7	2.5e-26	N/A	unknown function
eggNOG-mapper	UHGV-2061722_39	1160721.RBI_II00527	207.0	0	N/A	N/A
structural_annotation	UHGV-2061722_39	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_40	phrog_9680	50.6	7.9e-16	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-2061722_40	1160721.RBI_II00526	495.0	0	N/A	N/A
structural_annotation	UHGV-2061722_40	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2061722_42	1410617.JHXH01000006_gene232	63.2	0.000000000226	N/A	N/A
PHROG	UHGV-2061722_43	phrog_26878	86.4	2.3e-25	virion structural protein	head and packaging
eggNOG-mapper	UHGV-2061722_43	97138.C820_02500	101.0	3.35e-19	lipolytic protein G-D-S-L family	N/A
Pfam	UHGV-2061722_43	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-2061722_43	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
PHROG	UHGV-2061722_45	phrog_134	46.3	0.00000000000057	N/A	unknown function
UniRef90	UHGV-2061722_45	UniRef90_A0A374HLL3	94.4	1.24e-24	XkdX family protein	N/A
eggNOG-mapper	UHGV-2061722_45	1298920.KI911353_gene543	61.6	0.00000000000189	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-2061722_45	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-2061722_45	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_46	phrog_199	80.9	1.4e-23	holin	lysis
UniRef90	UHGV-2061722_46	UniRef90_A0A373XMP0	281.0	0	Holin	N/A
eggNOG-mapper	UHGV-2061722_46	1160721.RBI_I01565	182.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-2061722_46	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-2061722_46	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-2061722_46	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-2061722_46	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_47	phrog_297	173.3	0	holin	lysis
UniRef90	UHGV-2061722_47	UniRef90_A0A356CY82	463.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-2061722_47	1160721.RBI_II00521	94.0	3.74e-20	hydrolase, family 25	N/A
Pfam	UHGV-2061722_47	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-2061722_47	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-2061722_47	PF06940,TIGR02594,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-2061722_48	phrog_4962	147.6	6.02558e-44	N/A	unknown function
UniRef90	UHGV-2061722_48	UniRef90_R6U470	574.0	0	FRG domain protein	N/A
eggNOG-mapper	UHGV-2061722_48	706433.HMPREF9430_01842	107.0	9.88e-25	FRG	N/A
Pfam	UHGV-2061722_48	PF08867	N/A	N/A	FRG domain	FRG
COG	UHGV-2061722_48	COG4127	N/A	N/A	Predicted restriction endonuclease, Mrr-cat superfamily	N/A
UniRef90	UHGV-2061722_49	UniRef90_UPI001C104DBD	182.0	0	bacteriophage abortive infection AbiH family protein	N/A
eggNOG-mapper	UHGV-2061722_49	246199.CUS_4736	247.0	0	Bacteriophage abortive infection AbiH	N/A
Pfam	UHGV-2061722_49	PF14253	N/A	N/A	Bacteriophage abortive infection AbiH	AbiH

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2061722	Yes	36,235	43	100	1
UHGV-2035617	No	34,665	44	98	1
UHGV-0084978	No	31,801	46	90	1
UHGV-0317215	No	31,664	45	89	1
UHGV-1532562	No	31,437	46	89	1
UHGV-1434909	No	28,885	46	81	1
UHGV-2183053	No	26,394	44	74	1
UHGV-1423607	No	21,683	46	61	1
UHGV-1394236	No	19,202	46	54	1
UHGV-1441320	No	18,977	46	53	1
UHGV-0383219	No	18,149	46	51	1
UHGV-1591829	No	11,611	42	33	1
UHGV-1752640	No	10,640	46	30	1