vOTU vOTU-014532

vOTU: vOTU-014532

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-014532
Number of genomes	6
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00094 → vGENUS-00214 → vSUBGEN-26853 → vOTU-014532
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-2103458
Biosample ID	N/A
Genome length (bp)	38,424 bps
CheckV completeness	99.90% (High-quality)
CDS count	64
CDS density	93.20%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135	Total connections	635	Host agreement	94.96
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170	Total connections	15	Host agreement	80

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2103458_1	K06400	380.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2103458_1	phrog_95	366.6	0	integrase	integration and excision
UniRef90	UHGV-2103458_1	UniRef90_UPI00189960B8	506.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-2103458_1	1235835.C814_00825	412.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-2103458_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2103458_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-2103458_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-2103458_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2103458_1	PF00239,PF07508,PF19962,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-2103458_2	UniRef90_A0A810PZB1	69.7	0.00000000000518	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-2103458_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2103458_2	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-2103458_2	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-2103458_3	phrog_10292	74.9	6.6e-22	N/A	unknown function
UniRef90	UHGV-2103458_3	UniRef90_A0A359BK54	95.9	2.14e-22	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-2103458_3	1033810.HLPCO_001631	78.6	4.41e-17	TM2 domain	N/A
Pfam	UHGV-2103458_3	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-2103458_3	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-2103458_3	COG2314	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2103458_4	622312.ROSEINA2194_02761	59.3	0.0000000495	NOG18738 non supervised orthologous group	N/A
COG	UHGV-2103458_4	COG2169	N/A	N/A	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	N/A
structural_annotation	UHGV-2103458_4	PF02805	N/A	N/A	N/A	N/A
KOfam	UHGV-2103458_6	K22300	54.7	0.0000000000000024	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2103458_6	phrog_4	50.0	0.000000000000077	transcriptional repressor	transcription regulation
UniRef90	UHGV-2103458_6	UniRef90_A0A2U1BEG8	119.0	1.9e-32	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-2103458_6	1235797.C816_03553	107.0	7.27e-28	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-2103458_6	retron_type_VI_hth_cluster2_1	42.3	0.000000000015	N/A	Retron
Pfam	UHGV-2103458_6	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-2103458_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2103458_6	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2103458_9	PF05082	N/A	N/A	N/A	N/A
PHROG	UHGV-2103458_12	phrog_36399	54.2	0.0000000000000033	N/A	unknown function
PHROG	UHGV-2103458_13	phrog_8470	256.0	0	N/A	unknown function
UniRef90	UHGV-2103458_13	UniRef90_UPI0002D9F0BD	306.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-2103458_13	1007096.BAGW01000031_gene117	306.0	0	PcfJ-like protein	N/A
Pfam	UHGV-2103458_13	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-2103458_13	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-2103458_14	phrog_15609	230.0	0	N/A	unknown function
eggNOG-mapper	UHGV-2103458_14	1501230.ET33_21155	123.0	9.67e-30	N/A	N/A
Pfam	UHGV-2103458_14	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-2103458_14	COG0188	N/A	N/A	DNA gyrase/topoisomerase IV, subunit A	N/A
structural_annotation	UHGV-2103458_14	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
Pfam	UHGV-2103458_19	PF01355	N/A	N/A	High potential iron-sulfur protein	HIPIP
PHROG	UHGV-2103458_20	phrog_190	102.8	3.5e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2103458_20	UniRef90_UPI0006C2AC63	129.0	1.53e-35	N/A	N/A
eggNOG-mapper	UHGV-2103458_20	693746.OBV_25250	120.0	8.16e-33	N/A	N/A
Pfam	UHGV-2103458_20	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-2103458_20	PF06356	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2103458_22	PF10013	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2103458_27	PF08271	N/A	N/A	N/A	N/A
PHROG	UHGV-2103458_28	phrog_21498	294.0	0	N/A	unknown function
eggNOG-mapper	UHGV-2103458_28	78346.BRUM_0376	260.0	0	DNA binding	N/A
COG	UHGV-2103458_28	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-2103458_28	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-2103458_29	phrog_3584	113.5	1.6e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2103458_29	537013.CLOSTMETH_02141	62.4	0.00000000409	N/A	N/A
structural_annotation	UHGV-2103458_29	PF21578,MF_00360	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2103458_30	1297617.JPJD01000059_gene2640	84.7	3.61e-19	N/A	N/A
structural_annotation	UHGV-2103458_30	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-2103458_31	phrog_119	49.1	0.000000000000078	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2103458_31	UniRef90_A0A174XSZ8	125.0	5.87e-35	Prophage LambdaBa04, GP54	N/A
eggNOG-mapper	UHGV-2103458_31	1235793.C809_01915	117.0	2e-32	HNH endonuclease	N/A
Pfam	UHGV-2103458_31	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2103458_31	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-2103458_32	phrog_1066	131.2	3.8e-39	N/A	unknown function
eggNOG-mapper	UHGV-2103458_32	1382358.JHVN01000024_gene1703	123.0	9.62e-35	N/A	N/A
structural_annotation	UHGV-2103458_32	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-2103458_33	phrog_9	379.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-2103458_33	UniRef90_A0A1Y3W5R1	790.0	0	Terminase	N/A
eggNOG-mapper	UHGV-2103458_33	1203606.HMPREF1526_00981	737.0	0	Terminase	N/A
Pfam	UHGV-2103458_33	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2103458_33	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2103458_33	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2103458_33	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2103458_34	phrog_12	175.4	0	portal protein	head and packaging
UniRef90	UHGV-2103458_34	UniRef90_UPI001898FCCE	499.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-2103458_34	626523.GCWU000342_01027	499.0	0	Portal protein	N/A
Pfam	UHGV-2103458_34	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-2103458_34	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2103458_34	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-2103458_35	K01358	133.0	3.3e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-2103458_35	phrog_94	198.4	0	head maturation protease	head and packaging
UniRef90	UHGV-2103458_35	UniRef90_UPI0018979DC8	204.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-2103458_35	1280689.AUJC01000011_gene1520	183.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-2103458_35	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-2103458_35	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-2103458_35	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-2103458_36	phrog_10	180.7	0	major head protein	head and packaging
UniRef90	UHGV-2103458_36	UniRef90_UPI00189AE5FE	409.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-2103458_36	1280689.AUJC01000011_gene1521	385.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-2103458_36	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2103458_36	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2103458_36	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2103458_36	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2103458_37	phrog_5223	46.2	0.00000000000064	neck protein	connector
UniRef90	UHGV-2103458_37	UniRef90_B6W9Y5	60.8	0.000000000514	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-2103458_37	561177.ANHYDRO_01411	60.8	0.0000000000862	N/A	N/A
PHROG	UHGV-2103458_38	phrog_1951	74.5	1e-21	head-tail adaptor	connector
UniRef90	UHGV-2103458_38	UniRef90_UPI001B02B074	63.5	0.0000000000519	phage head closure protein	N/A
eggNOG-mapper	UHGV-2103458_38	1094508.Tsac_2422	54.7	0.0000000285	Phage head-tail joining protein	N/A
Pfam	UHGV-2103458_38	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-2103458_38	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-2103458_38	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-2103458_38	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2103458_39	1487921.DP68_11350	61.2	0.000000000099	N/A	N/A
structural_annotation	UHGV-2103458_39	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-2103458_40	phrog_5	43.4	0.0000000000078	tail completion or Neck1 protein	connector
structural_annotation	UHGV-2103458_40	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-2103458_41	phrog_88	85.3	7.7e-25	major tail protein	tail
UniRef90	UHGV-2103458_41	UniRef90_S0FUN2	116.0	2.37e-29	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-2103458_41	1195236.CTER_5106	116.0	3.98e-30	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-2103458_41	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-2103458_41	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2103458_41	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2103458_42	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-2103458_43	phrog_8462	132.1	6.1e-39	tail length tape measure protein	tail
UniRef90	UHGV-2103458_43	UniRef90_A0A1M6L1P7	233.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-2103458_43	1195236.CTER_5104	230.0	0	nuclear chromosome segregation	N/A
COG	UHGV-2103458_43	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-2103458_43	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-2103458_44	phrog_37549	82.2	2e-26	virion structural protein	head and packaging
UniRef90	UHGV-2103458_44	UniRef90_A0A3D0W045	218.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-2103458_44	1195236.CTER_5103	127.0	5.71e-28	N/A	N/A
structural_annotation	UHGV-2103458_44	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2103458_45	phrog_26795	127.9	5.7e-38	N/A	unknown function
UniRef90	UHGV-2103458_45	UniRef90_A0A5J6T4K8	134.0	2.17e-32	Minor tail protein	N/A
eggNOG-mapper	UHGV-2103458_45	1195236.CTER_5102	134.0	2.51e-33	N/A	N/A
structural_annotation	UHGV-2103458_45	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2103458_46	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2103458_47	PF10651	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2103458_48	411471.SUBVAR_06929	317.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-2103458_48	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
PHROG	UHGV-2103458_49	phrog_37900	320.1	0	N/A	unknown function
UniRef90	UHGV-2103458_49	UniRef90_UPI001C3EA4DF	339.0	0	N/A	N/A
eggNOG-mapper	UHGV-2103458_49	552398.HMPREF0866_03098	249.0	0	N/A	N/A
Pfam	UHGV-2103458_49	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-2103458_49	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-2103458_49	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-2103458_50	phrog_29409	41.5	0.000000000011	N/A	unknown function
structural_annotation	UHGV-2103458_52	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-2103458_55	phrog_13256	62.4	4.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-2103458_55	1226322.HMPREF1545_00166	67.4	0.0000000000000797	N/A	N/A
PHROG	UHGV-2103458_56	phrog_14030	141.1	7.60064e-42	N/A	unknown function
UniRef90	UHGV-2103458_56	UniRef90_R6LL81	242.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-2103458_56	1121866.AUGK01000003_gene1444	92.0	1.29e-18	amidase activity	N/A
COG	UHGV-2103458_56	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
eggNOG-mapper	UHGV-2103458_58	760568.Desku_0885	58.5	0.0000000509	N/A	N/A
structural_annotation	UHGV-2103458_58	PF14528,PF05204,MF_01420,TIGR00647,COG3780	N/A	N/A	N/A	N/A
PHROG	UHGV-2103458_60	phrog_25567	41.6	0.000000000016	N/A	unknown function
UniRef90	UHGV-2103458_60	UniRef90_UPI00164AED9E	91.7	9.21e-22	helix-turn-helix domain-containing protein	N/A
COG	UHGV-2103458_60	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-2103458_60	PF13560,NF040522,COG2944	N/A	N/A	N/A	N/A
UniRef90	UHGV-2103458_64	UniRef90_A0A7M1RTM1	80.1	0.00000000000000108	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-2103458_64	1378168.N510_03079	68.6	0.0000000000105	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2103458	Yes	38,424	58	100	1
UHGV-0110117	No	41,261	58	100	1
UHGV-1489298	No	19,619	58	53	1
UHGV-1683762	No	12,826	58	35	1
UHGV-1564180	No	12,133	56	33	1
UHGV-1789035	No	11,112	59	30	1