vOTU vOTU-014559

vOTU: vOTU-014559

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-014559
Number of genomes	4
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp900540595
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-00313 → vGENUS-00344 → vSUBGEN-04725 → vOTU-014559
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2114825
Biosample ID	N/A
Genome length (bp)	35,078 bps
CheckV completeness	99.90% (High-quality)
CDS count	45
CDS density	93.80%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	58	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp900540595	Total connections	9	Host agreement	88.89

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2114825_1	K19304	114.4	1.2e-33	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-2114825_1	phrog_10030	80.0	9.9e-24	tail length tape measure protein	tail
UniRef90	UHGV-2114825_1	UniRef90_UPI0019599082	298.0	0	M23 family metallopeptidase	N/A
eggNOG-mapper	UHGV-2114825_1	264732.Moth_2422	89.7	5.63e-18	G5 domain protein	N/A
Pfam	UHGV-2114825_1	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-2114825_1	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-2114825_1	PF01551,NF040883	N/A	N/A	N/A	N/A
PHROG	UHGV-2114825_3	phrog_4912	69.7	5.6e-20	tail fiber assembly	tail
UniRef90	UHGV-2114825_3	UniRef90_UPI0019223612	76.6	0.00000000000000416	phage tail assembly chaperone	N/A
eggNOG-mapper	UHGV-2114825_3	1121406.JAEX01000012_gene656	70.9	0.000000000000187	Phage tail assembly chaperone protein	N/A
Pfam	UHGV-2114825_3	PF16778	N/A	N/A	Phage tail assembly chaperone protein	Phage_tail_APC
structural_annotation	UHGV-2114825_3	PF16778	N/A	N/A	N/A	N/A
PHROG	UHGV-2114825_4	phrog_5302	166.7	0	tail protein	tail
UniRef90	UHGV-2114825_4	UniRef90_UPI001C3BCE79	146.0	5.54e-34	Phage tail protein	N/A
eggNOG-mapper	UHGV-2114825_4	411470.RUMGNA_00248	153.0	2.58e-37	Phage tail-collar fibre protein	N/A
COG	UHGV-2114825_4	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-2114825_5	PF16407	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2114825_6	PF18614,MF_00085,NF003082,COG0361	N/A	N/A	N/A	N/A
PHROG	UHGV-2114825_7	phrog_26795	93.1	1.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-2114825_7	742740.HMPREF9474_04294	123.0	2.95e-29	N/A	N/A
structural_annotation	UHGV-2114825_7	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-2114825_8	phrog_37549	40.8	1.4e-17	virion structural protein	head and packaging
UniRef90	UHGV-2114825_8	UniRef90_A0A3D0W045	226.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-2114825_8	1161901.I1TLF2_9CAUD	78.6	0.00000000000658	N/A	N/A
structural_annotation	UHGV-2114825_8	PF02010,PF06995,MF_04116,NF010681,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2114825_9	phrog_33680	121.1	9e-37	N/A	unknown function
UniRef90	UHGV-2114825_9	UniRef90_A0A174XMM8	263.0	0	Tail tape measure protein TP901 core region	N/A
eggNOG-mapper	UHGV-2114825_9	1195236.CTER_5104	271.0	0	nuclear chromosome segregation	N/A
COG	UHGV-2114825_9	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-2114825_9	TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2114825_10	PF12363	N/A	N/A	N/A	N/A
PHROG	UHGV-2114825_11	phrog_88	43.5	0.0000000000047	major tail protein	tail
structural_annotation	UHGV-2114825_11	PF06488,TIGR01603	N/A	N/A	N/A	N/A
PHROG	UHGV-2114825_13	phrog_5	49.1	0.00000000000013	tail completion or Neck1 protein	connector
UniRef90	UHGV-2114825_13	UniRef90_UPI000684DFDC	60.1	0.000000011	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2114825_13	1195236.CTER_5108	82.0	5.21e-18	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-2114825_13	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-2114825_13	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-2114825_14	phrog_1951	66.6	3.1e-19	head-tail adaptor	connector
UniRef90	UHGV-2114825_14	UniRef90_UPI00195B41A2	154.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-2114825_14	411470.RUMGNA_02070	64.7	0.00000000000407	N/A	N/A
NCBIFam	UHGV-2114825_14	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-2114825_14	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2114825_15	phrog_5223	72.8	3.1e-21	neck protein	connector
UniRef90	UHGV-2114825_15	UniRef90_UPI00195CBB4A	140.0	1.46996e-41	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-2114825_15	411471.SUBVAR_05853	93.6	1.17e-23	N/A	N/A
PHROG	UHGV-2114825_16	phrog_10	60.3	2.8e-17	major head protein	head and packaging
UniRef90	UHGV-2114825_16	UniRef90_A0A1C5W5F9	447.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-2114825_16	742740.HMPREF9474_04304	396.0	0	Phage capsid family	N/A
Pfam	UHGV-2114825_16	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2114825_16	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-2114825_16	PF05065,PF09032,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-2114825_17	K06904	124.9	9.1e-37	N/A	N/A
PHROG	UHGV-2114825_17	phrog_80	133.3	2.3e-39	head maturation protease	head and packaging
UniRef90	UHGV-2114825_17	UniRef90_A0A1C5W530	269.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-2114825_17	411471.SUBVAR_05851	249.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-2114825_17	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-2114825_17	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-2114825_17	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-2114825_17	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-2114825_18	phrog_12	118.0	6.7e-35	portal protein	head and packaging
UniRef90	UHGV-2114825_18	UniRef90_UPI00195C5E58	649.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-2114825_18	742740.HMPREF9474_04306	589.0	0	Phage portal protein	N/A
Pfam	UHGV-2114825_18	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-2114825_18	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2114825_18	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-2114825_19	phrog_9	334.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-2114825_19	UniRef90_A0A8J6TY49	895.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-2114825_19	411471.SUBVAR_05848	794.0	0	large subunit	N/A
Pfam	UHGV-2114825_19	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2114825_19	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2114825_19	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2114825_19	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2114825_20	phrog_1066	88.4	6.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-2114825_20	1094508.Tsac_2428	98.2	5.16e-25	N/A	N/A
structural_annotation	UHGV-2114825_20	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
UniRef90	UHGV-2114825_21	UniRef90_A0A5C6RH43	220.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-2114825_21	930166.CD58_16850	115.0	9.3e-24	N/A	N/A
structural_annotation	UHGV-2114825_21	PF10443,MF_00553,TIGR01242,COG5635	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2114825_22	693746.OBV_25230	124.0	1.36e-34	N/A	N/A
structural_annotation	UHGV-2114825_22	PF06530,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-2114825_24	K03497	94.0	2.7e-27	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-2114825_24	phrog_4715	135.4	2.8e-40	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2114825_24	UniRef90_A0A1Q6T350	866.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-2114825_24	411471.SUBVAR_05842	382.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-2114825_24	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-2114825_24	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-2114825_24	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-2114825_25	K03496	221.8	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-2114825_25	phrog_164	168.4	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2114825_25	UniRef90_A0A1Q6T3I8	483.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-2114825_25	411471.SUBVAR_05839	279.0	0	AAA domain	N/A
Pfam	UHGV-2114825_25	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-2114825_25	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-2114825_25	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-2114825_26	K02314	228.2	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-2114825_26	phrog_19	216.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2114825_26	UniRef90_A0A6N8GZX5	806.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-2114825_26	411471.SUBVAR_05838	417.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-2114825_26	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-2114825_26	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-2114825_26	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-2114825_26	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-2114825_27	phrog_678	77.8	1.7e-22	replication initiation O-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2114825_27	UniRef90_A0A6N8H2D2	384.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2114825_27	411471.SUBVAR_05835	150.0	1.54003e-41	Helix-turn-helix domain	N/A
Pfam	UHGV-2114825_27	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-2114825_27	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-2114825_27	PF13730,MF_01909,TIGR04176,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-2114825_28	K03111	130.6	1.8e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2114825_28	phrog_44	137.5	8.5e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2114825_28	UniRef90_A0A1Q6T3F1	256.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2114825_28	411471.SUBVAR_04646	182.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-2114825_28	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2114825_28	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2114825_28	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2114825_28	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2114825_28	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2114825_29	phrog_1029	200.4	0	N/A	unknown function
eggNOG-mapper	UHGV-2114825_29	411471.SUBVAR_05833	241.0	0	N/A	N/A
structural_annotation	UHGV-2114825_29	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-2114825_30	phrog_997	113.6	1.2e-33	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2114825_30	UniRef90_UPI001165C3F9	80.5	4.78e-17	replication terminator protein	N/A
eggNOG-mapper	UHGV-2114825_30	411471.SUBVAR_05832	160.0	0	N/A	N/A
PHROG	UHGV-2114825_32	phrog_7566	74.9	7.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-2114825_32	411471.SUBVAR_05830	115.0	4.14e-32	N/A	N/A
COG	UHGV-2114825_33	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-2114825_33	PF04606,NF007241	N/A	N/A	N/A	N/A
PHROG	UHGV-2114825_34	phrog_72	49.7	0.000000000000059	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2114825_34	411471.SUBVAR_05829	207.0	0	N/A	N/A
structural_annotation	UHGV-2114825_34	PF05772,NF007281	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2114825_35	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-2114825_36	phrog_10280	50.6	0.000000000000019	N/A	unknown function
eggNOG-mapper	UHGV-2114825_36	742738.HMPREF9460_02068	62.0	0.0000000176	N/A	N/A
eggNOG-mapper	UHGV-2114825_39	517418.Ctha_0322	69.7	0.00000000000166	N/A	N/A
structural_annotation	UHGV-2114825_39	PF18186,NF033632	N/A	N/A	N/A	N/A
KOfam	UHGV-2114825_40	K22300	42.2	0.000000000015	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2114825_40	phrog_8	51.4	0.000000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-2114825_40	UniRef90_A0A367GFH2	103.0	9.83e-28	Transcriptional regulator	N/A
Pfam	UHGV-2114825_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2114825_40	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2114825_40	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2114825_41	K01356	147.3	1.69557e-43	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-2114825_41	phrog_4	118.7	6.2e-35	transcriptional repressor	transcription regulation
UniRef90	UHGV-2114825_41	UniRef90_A0A1Q6T3E1	398.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2114825_41	411483.FAEPRAA2165_03041	156.0	2.8026e-45	N/A	N/A
Pfam	UHGV-2114825_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-2114825_41	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-2114825_41	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2114825_41	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-2114825_42	K02342	187.4	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-2114825_42	phrog_192	154.0	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2114825_42	UniRef90_A0A1Y3SB26	232.0	0	Exonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-2114825_42	1203606.HMPREF1526_00999	182.0	0	EXOIII	N/A
PADLOC	UHGV-2114825_42	cd06127	126.4	2e-37	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-2114825_42	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-2114825_42	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-2114825_42	COG2176	N/A	N/A	DNA polymerase III, alpha subunit (gram-positive type)	N/A
KOfam	UHGV-2114825_43	K07171	47.2	0.000000000000022	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-2114825_43	phrog_1412	151.9	4.2039e-45	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2114825_43	UniRef90_UPI00157042DF	145.0	6.94e-39	type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-2114825_43	596329.HMPREF0631_1341	127.0	4.15e-33	PemK-like, MazF-like toxin of type II toxin-antitoxin system	N/A
Pfam	UHGV-2114825_43	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-2114825_43	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-2114825_43	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
KOfam	UHGV-2114825_45	K14059	132.4	5.5e-39	int; integrase	N/A
PHROG	UHGV-2114825_45	phrog_1	146.3	2.60642e-43	integrase	integration and excision
UniRef90	UHGV-2114825_45	UniRef90_A0A1Q6T3G6	723.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-2114825_45	1203606.HMPREF1526_00215	142.0	2.85e-36	Phage integrase family	N/A
Pfam	UHGV-2114825_45	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2114825_45	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2114825_45	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2114825	Yes	35,078	56	100	1
UHGV-0109644	No	37,019	56	100	1
UHGV-0104822	No	18,087	58	55	1
UHGV-0181224	No	13,631	58	41	1