vOTU vOTU-014663

vOTU: vOTU-014663

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-014663
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00030 → vGENUS-02658 → vSUBGEN-14806 → vOTU-014663
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2170496
Biosample ID	SAMEA3449337
Genome length (bp)	33,847 bps
CheckV completeness	97.94% (High-quality)
CDS count	54
CDS density	90.34%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena	Total connections	83	Host agreement	78.31
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena	Total connections	28	Host agreement	89.29

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 97.94)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-2170496_1	UniRef90_A0A6L8RZT9	158.0	0	TetR/AcrR family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2170496_1	471875.RUMLAC_02592	109.0	6.61e-29	tetR family	N/A
COG	UHGV-2170496_1	COG1309	N/A	N/A	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	N/A
KOfam	UHGV-2170496_2	K02051	42.1	0.000000000014	ABC.SN.S; NitT/TauT family transport system substrate-binding protein	N/A
UniRef90	UHGV-2170496_2	UniRef90_UPI001570A6DA	159.0	0	ABC transporter substrate-binding protein	N/A
eggNOG-mapper	UHGV-2170496_2	411462.DORLON_01446	157.0	1.4013e-45	COG COG0715 ABC-type nitrate sulfonate bicarbonate transport systems, periplasmic components	N/A
Pfam	UHGV-2170496_2	PF09084	N/A	N/A	NMT1/THI5 like	NMT1
COG	UHGV-2170496_2	COG0715	N/A	N/A	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	N/A
PHROG	UHGV-2170496_3	phrog_7854	259.6	0	endolysin	lysis
UniRef90	UHGV-2170496_3	UniRef90_A6BEP4	420.0	0	Putative N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-2170496_3	411462.DORLON_00764	420.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-2170496_3	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-2170496_3	PF01473	N/A	N/A	Putative cell wall binding repeat	Choline_bind_1
Pfam	UHGV-2170496_3	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-2170496_3	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-2170496_3	PF01520,TIGR02883,COG0860,COG5263	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_4	phrog_443	45.6	0.0000000000018	holin	lysis
UniRef90	UHGV-2170496_4	UniRef90_UPI001F16E4E6	110.0	1.28e-30	holin	N/A
eggNOG-mapper	UHGV-2170496_4	411462.DORLON_00825	108.0	2.58e-30	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-2170496_4	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-2170496_4	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_5	phrog_1863	53.3	2.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-2170496_5	1226322.HMPREF1545_04027	67.8	0.0000000000000508	N/A	N/A
eggNOG-mapper	UHGV-2170496_6	457412.RSAG_04673	58.5	0.0000000000484	N/A	N/A
KOfam	UHGV-2170496_8	K00986	124.9	8.3e-37	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-2170496_8	phrog_1423	233.9	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2170496_8	UniRef90_F7K002	267.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-2170496_8	1235802.C823_04721	259.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-2170496_8	icity0040	111.3	1.8e-32	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-2170496_8	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-2170496_8	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-2170496_8	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
UniRef90	UHGV-2170496_9	UniRef90_A0A173SBN1	78.6	1.99e-16	S23 ribosomal protein	N/A
eggNOG-mapper	UHGV-2170496_9	658655.HMPREF0988_00872	74.7	0.00000000000000107	N/A	N/A
structural_annotation	UHGV-2170496_9	PF05635,NF033474,COG3308	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_10	phrog_16164	156.8	0	N/A	unknown function
UniRef90	UHGV-2170496_10	UniRef90_UPI0019156A7A	498.0	0	N/A	N/A
eggNOG-mapper	UHGV-2170496_10	1203606.HMPREF1526_01924	99.0	6.77e-19	N/A	N/A
Pfam	UHGV-2170496_10	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-2170496_10	PF10651	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2170496_11	1280698.AUJS01000007_gene1053	117.0	2.16e-34	N/A	N/A
PHROG	UHGV-2170496_12	phrog_12931	96.2	1.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-2170496_12	1280698.AUJS01000007_gene1052	261.0	0	N/A	N/A
PHROG	UHGV-2170496_13	phrog_25635	427.9	0	N/A	unknown function
eggNOG-mapper	UHGV-2170496_13	411462.DORLON_00774	364.0	0	N/A	N/A
structural_annotation	UHGV-2170496_13	PF18573,PF20747,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_14	phrog_538	203.4	0	minor tail protein	tail
UniRef90	UHGV-2170496_14	UniRef90_UPI001F3E20C1	502.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-2170496_14	1280698.AUJS01000007_gene1049	654.0	0	N/A	N/A
Pfam	UHGV-2170496_14	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-2170496_14	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_15	phrog_6900	261.7	0	tail length tape measure protein	tail
UniRef90	UHGV-2170496_15	UniRef90_A0A174L0T5	521.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-2170496_15	1280698.AUJS01000007_gene1047	685.0	0	nuclear chromosome segregation	N/A
COG	UHGV-2170496_15	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2170496_15	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_16	phrog_1633	161.7	0	N/A	unknown function
UniRef90	UHGV-2170496_16	UniRef90_UPI00157064A0	145.0	1.56945e-42	N/A	N/A
eggNOG-mapper	UHGV-2170496_16	1280698.AUJS01000007_gene1046	244.0	0	N/A	N/A
Pfam	UHGV-2170496_16	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-2170496_16	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_17	phrog_1526	106.6	1.2e-31	N/A	unknown function
UniRef90	UHGV-2170496_17	UniRef90_A0A1Q8EF45	72.8	0.00000000000000846	N/A	N/A
eggNOG-mapper	UHGV-2170496_17	665950.HMPREF1025_02524	82.4	2.06e-19	N/A	N/A
PHROG	UHGV-2170496_18	phrog_117	173.2	0	major tail protein	tail
UniRef90	UHGV-2170496_18	UniRef90_UPI001F18A06D	278.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-2170496_18	1280698.AUJS01000007_gene1044	360.0	0	domain, Protein	N/A
COG	UHGV-2170496_18	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2170496_18	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_19	phrog_123	50.5	0.000000000000039	tail terminator	connector
UniRef90	UHGV-2170496_19	UniRef90_A0A2A5RIK6	118.0	2.15e-32	N/A	N/A
eggNOG-mapper	UHGV-2170496_19	1280698.AUJS01000007_gene1043	189.0	0	N/A	N/A
structural_annotation	UHGV-2170496_19	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_20	phrog_387	48.8	0.000000000000058	neck protein	connector
eggNOG-mapper	UHGV-2170496_20	908337.HMPREF9257_0534	48.9	0.00000107	N/A	N/A
PHROG	UHGV-2170496_21	phrog_501	90.6	1.3e-26	head closure Hc1	connector
UniRef90	UHGV-2170496_21	UniRef90_Q7Y4I1	135.0	6.87e-39	Gp43	N/A
eggNOG-mapper	UHGV-2170496_21	1280698.AUJS01000007_gene1041	224.0	0	N/A	N/A
structural_annotation	UHGV-2170496_21	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_22	phrog_137	110.5	7.8e-33	head-tail adaptor Ad1	connector
UniRef90	UHGV-2170496_22	UniRef90_A0A1C5Y9F2	189.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-2170496_22	1280698.AUJS01000007_gene1040	259.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-2170496_22	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-2170496_22	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_23	phrog_36603	74.4	9.2e-22	N/A	unknown function
PHROG	UHGV-2170496_24	phrog_32396	146.3	4.48416e-44	N/A	unknown function
UniRef90	UHGV-2170496_24	UniRef90_UPI001961D35B	474.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-2170496_24	1280698.AUJS01000007_gene1038	565.0	0	Phage capsid family	N/A
structural_annotation	UHGV-2170496_24	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_25	phrog_233	118.6	1.7e-36	head scaffolding protein	head and packaging
UniRef90	UHGV-2170496_25	UniRef90_A0A2S0L5H5	127.0	2.27e-34	Phage scaffold protein	N/A
eggNOG-mapper	UHGV-2170496_25	1280698.AUJS01000007_gene1037	266.0	0	N/A	N/A
Pfam	UHGV-2170496_25	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-2170496_25	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_26	phrog_17688	346.2	0	N/A	unknown function
UniRef90	UHGV-2170496_26	UniRef90_R6SFU1	916.0	0	Putative phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2170496_26	1280698.AUJS01000007_gene1036	914.0	0	phage terminase, large subunit	N/A
COG	UHGV-2170496_26	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2170496_26	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_27	phrog_1865	54.3	0.0000000000000019	N/A	unknown function
structural_annotation	UHGV-2170496_27	PF07073,MF_00436,NF008636,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_28	phrog_2494	393.5	0	minor head protein	head and packaging
UniRef90	UHGV-2170496_28	UniRef90_UPI00156EC2C0	755.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-2170496_28	1280698.AUJS01000007_gene1034	741.0	0	cell adhesion	N/A
Pfam	UHGV-2170496_28	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
COG	UHGV-2170496_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2170496_28	PF15542	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_29	phrog_104	283.3	0	portal protein	head and packaging
UniRef90	UHGV-2170496_29	UniRef90_UPI001A9C29A4	582.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-2170496_29	1280698.AUJS01000007_gene1033	822.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-2170496_29	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_30	phrog_338	104.0	1.7e-30	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2170496_30	UniRef90_UPI0015708A7C	246.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2170496_30	1280698.AUJS01000007_gene1032	223.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-2170496_30	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2170496_30	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-2170496_30	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_31	phrog_36	52.4	0.000000000000009	transcriptional regulator	transcription regulation
UniRef90	UHGV-2170496_31	UniRef90_A0A416MN03	117.0	1.59e-30	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-2170496_31	1256908.HMPREF0373_00671	191.0	0	N/A	N/A
structural_annotation	UHGV-2170496_31	PF04545,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_32	phrog_26445	43.7	0.000000000000024	N/A	unknown function
eggNOG-mapper	UHGV-2170496_32	97139.C824_00034	52.8	0.000000487	N/A	N/A
structural_annotation	UHGV-2170496_32	PF21220,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_35	phrog_24386	195.7	0	N/A	unknown function
eggNOG-mapper	UHGV-2170496_35	478749.BRYFOR_08546	174.0	0	UMP catabolic process	N/A
COG	UHGV-2170496_35	COG0647	N/A	N/A	Ribonucleotide monophosphatase NagD, HAD superfamily	N/A
structural_annotation	UHGV-2170496_37	PF10400	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_38	phrog_7566	100.3	9.2e-30	N/A	unknown function
eggNOG-mapper	UHGV-2170496_38	1280698.AUJS01000007_gene1020	237.0	0	N/A	N/A
PHROG	UHGV-2170496_39	phrog_15077	126.3	1.7e-37	N/A	unknown function
UniRef90	UHGV-2170496_39	UniRef90_A0A174WLY0	98.6	1.75e-18	N/A	N/A
eggNOG-mapper	UHGV-2170496_39	1280698.AUJS01000007_gene1019	201.0	0	N/A	N/A
structural_annotation	UHGV-2170496_39	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_40	phrog_8470	281.1	0	N/A	unknown function
UniRef90	UHGV-2170496_40	UniRef90_UPI001D0719D3	736.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-2170496_40	742740.HMPREF9474_03121	185.0	0	PcfJ-like protein	N/A
Pfam	UHGV-2170496_40	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-2170496_40	PF14284	N/A	N/A	N/A	N/A
UniRef90	UHGV-2170496_41	UniRef90_UPI0003F6328F	204.0	0	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-2170496_41	999413.HMPREF1094_04704	81.3	1.88e-17	N/A	N/A
Pfam	UHGV-2170496_41	PF14058	N/A	N/A	PcfK-like protein	PcfK
KOfam	UHGV-2170496_42	K03469	51.3	0.000000000000021	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-2170496_42	phrog_531	54.5	0.0000000000000021	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2170496_42	UniRef90_A0A173RBQ5	265.0	0	Ribonuclease H	N/A
eggNOG-mapper	UHGV-2170496_42	1280698.AUJS01000007_gene1015	228.0	0	RNA-DNA hybrid ribonuclease activity	N/A
Pfam	UHGV-2170496_42	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-2170496_42	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-2170496_42	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_44	phrog_3584	143.2	1.49939e-42	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2170496_44	411461.DORFOR_01138	327.0	0	N/A	N/A
structural_annotation	UHGV-2170496_44	PF01446	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_50	phrog_28456	46.5	0.00000000000066	N/A	unknown function
KOfam	UHGV-2170496_51	K18830	68.4	1.2e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-2170496_51	phrog_4	57.4	3.8e-16	transcriptional repressor	transcription regulation
UniRef90	UHGV-2170496_51	UniRef90_UPI0003FEB08A	261.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2170496_51	1280698.AUJS01000007_gene1002	261.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2170496_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2170496_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2170496_51	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2170496_53	phrog_7115	139.3	1.19993e-41	N/A	unknown function
UniRef90	UHGV-2170496_53	UniRef90_A0A396KU40	311.0	0	PH domain-containing protein	N/A
eggNOG-mapper	UHGV-2170496_53	1280698.AUJS01000007_gene1000	315.0	0	Bacterial PH domain	N/A
Pfam	UHGV-2170496_53	PF08000	N/A	N/A	Bacterial PH domain	bPH_1
KOfam	UHGV-2170496_54	K06400	263.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2170496_54	phrog_95	292.9	0	integrase	integration and excision
UniRef90	UHGV-2170496_54	UniRef90_UPI00156F85ED	903.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-2170496_54	411461.DORFOR_00037	691.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-2170496_54	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2170496_54	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-2170496_54	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2170496_54	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2170496	Yes	33,847	41	98	1
UHGV-0088784	No	33,515	41	97	1
UHGV-1420659	No	21,836	42	64	1