vOTU vOTU-014711

vOTU: vOTU-014711

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-014711
Number of genomes	7
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-01135 → vGENUS-01088 → vSUBGEN-38702 → vOTU-014711
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Host range breadth	Genus
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0074672
Biosample ID	SAMEA2737728
Genome length (bp)	37,346 bps
CheckV completeness	99.90% (High-quality)
CDS count	61
CDS density	90.90%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	159	Host agreement	81.13
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900547315	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0074672_1	1408437.JNJN01000043_gene801	96.3	1.76e-22	N/A	N/A
eggNOG-mapper	UHGV-0074672_2	1408437.JNJN01000043_gene802	150.0	2.8026e-45	N/A	N/A
PHROG	UHGV-0074672_3	phrog_16490	210.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0074672_3	1408437.JNJN01000043_gene803	196.0	0	N/A	N/A
eggNOG-mapper	UHGV-0074672_5	445972.ANACOL_01878	50.8	0.00000482	N/A	N/A
structural_annotation	UHGV-0074672_7	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-0074672_8	phrog_937	51.7	0.000000000000017	hemolysin	other
eggNOG-mapper	UHGV-0074672_8	1519439.JPJG01000023_gene533	80.5	1.86e-18	N/A	N/A
PHROG	UHGV-0074672_9	phrog_1493	57.2	4.3e-16	endolysin	lysis
UniRef90	UHGV-0074672_9	UniRef90_A0A1C6GMR6	197.0	0	NlpC/P60 family	N/A
eggNOG-mapper	UHGV-0074672_9	871963.Desdi_1346	121.0	1.65e-29	NLP P60 protein	N/A
Pfam	UHGV-0074672_9	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0074672_9	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0074672_9	PF01471,PF00877,NF033742,NF038080,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0074672_13	phrog_24267	83.8	2.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0074672_13	742742.HMPREF9452_00376	123.0	5.56e-31	tail collar domain protein	N/A
COG	UHGV-0074672_13	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0074672_13	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0074672_14	phrog_13564	47.8	0.00000000000018	minor tail protein	tail
structural_annotation	UHGV-0074672_14	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0074672_15	phrog_13339	379.7	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0074672_15	1408437.JNJN01000030_gene1055	274.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0074672_15	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0074672_15	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0074672_15	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0074672_16	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0074672_17	phrog_88	97.0	1.5e-28	major tail protein	tail
UniRef90	UHGV-0074672_17	UniRef90_UPI0018771F27	304.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0074672_17	33035.JPJF01000039_gene278	121.0	1.01e-31	N/A	N/A
NCBIFam	UHGV-0074672_17	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0074672_17	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0074672_18	phrog_5	47.4	0.00000000000042	tail completion or Neck1 protein	connector
UniRef90	UHGV-0074672_18	UniRef90_A0A1C6FG30	143.0	1.55e-40	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0074672_18	908340.HMPREF9406_2573	89.7	1.87e-20	N/A	N/A
structural_annotation	UHGV-0074672_18	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0074672_19	1235798.C817_04588	84.3	8.8e-20	N/A	N/A
structural_annotation	UHGV-0074672_19	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0074672_20	phrog_19734	109.3	2.8e-32	N/A	unknown function
UniRef90	UHGV-0074672_20	UniRef90_A0A6I7GNS7	114.0	2.53e-30	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0074672_20	349161.Dred_2602	71.6	0.0000000000000192	N/A	N/A
structural_annotation	UHGV-0074672_20	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0074672_21	phrog_749	67.0	2.7e-19	N/A	unknown function
UniRef90	UHGV-0074672_21	UniRef90_UPI001C0F1EE0	68.2	0.000000000000719	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0074672_21	349161.Dred_2603	96.3	1.15e-24	N/A	N/A
PHROG	UHGV-0074672_22	phrog_10	146.5	2.90069e-43	major head protein	head and packaging
UniRef90	UHGV-0074672_22	UniRef90_G9YSC0	567.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0074672_22	1235792.C808_00086	425.0	0	Phage capsid family	N/A
Pfam	UHGV-0074672_22	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0074672_22	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0074672_22	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0074672_22	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0074672_22	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0074672_23	K01358	120.0	2.8e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0074672_23	phrog_94	183.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0074672_23	UniRef90_UPI00111E41DA	164.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0074672_23	1384484.AEQU_1181	133.0	2.58e-35	Clp protease	N/A
Pfam	UHGV-0074672_23	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0074672_23	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0074672_23	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0074672_24	phrog_12	106.7	1.9e-31	portal protein	head and packaging
UniRef90	UHGV-0074672_24	UniRef90_UPI0018755FA4	441.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0074672_24	349161.Dred_2606	282.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0074672_24	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0074672_24	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0074672_24	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0074672_25	phrog_9	225.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0074672_25	UniRef90_UPI0018737C02	810.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0074672_25	1235792.C808_00083	583.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0074672_25	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0074672_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0074672_25	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0074672_26	phrog_5110	61.2	1.6e-17	terminase small subunit	head and packaging
UniRef90	UHGV-0074672_26	UniRef90_UPI00195E8788	112.0	5.07e-30	P27 family phage terminase small subunit	N/A
Pfam	UHGV-0074672_26	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0074672_26	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0074672_26	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0074672_27	K00571	197.8	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0074672_27	phrog_67	193.4	0	DNA methyltransferase	other
UniRef90	UHGV-0074672_27	UniRef90_UPI00055C7461	349.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0074672_27	371042.NG99_23680	135.0	7.01e-34	DNA methylase	N/A
PADLOC	UHGV-0074672_27	MTase_II_00051	155.2	1.4013e-45	Type II methyltransferase	RM
Pfam	UHGV-0074672_27	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0074672_27	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-0074672_27	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0074672_28	phrog_119	70.9	2e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0074672_28	UniRef90_UPI001958184D	157.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0074672_28	926561.KB900623_gene763	77.8	5.55e-17	HNH nucleases	N/A
COG	UHGV-0074672_28	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0074672_30	phrog_36	46.9	0.00000000000058	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0074672_30	1134413.ANNK01000120_gene2036	60.1	0.0000000017	N/A	N/A
Pfam	UHGV-0074672_30	PF07638	N/A	N/A	ECF sigma factor	Sigma70_ECF
NCBIFam	UHGV-0074672_30	TIGR01636.1	N/A	N/A	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-0074672_30	PF05263,TIGR01636,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-0074672_32	phrog_3584	117.1	1.6e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0074672_32	537013.CLOSTMETH_02141	74.3	0.000000000000156	N/A	N/A
structural_annotation	UHGV-0074672_32	PF21578,MF_00360	N/A	N/A	N/A	N/A
KOfam	UHGV-0074672_34	K05840	45.2	0.0000000000012	DRD5; dopamine receptor D5	N/A
PHROG	UHGV-0074672_34	phrog_15773	77.5	1.3e-22	N/A	unknown function
dbAPIS	UHGV-0074672_34	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A
PHROG	UHGV-0074672_36	phrog_15609	244.4	0	N/A	unknown function
UniRef90	UHGV-0074672_36	UniRef90_A0A7G9WGA3	148.0	3.43e-38	N/A	N/A
eggNOG-mapper	UHGV-0074672_36	1123288.SOV_1c10530	125.0	1.05e-30	N/A	N/A
Pfam	UHGV-0074672_36	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0074672_36	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-0074672_36	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0074672_37	phrog_8470	242.4	0	N/A	unknown function
UniRef90	UHGV-0074672_37	UniRef90_UPI00164B8CC7	247.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0074672_37	1378168.N510_01842	248.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0074672_37	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0074672_37	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0074672_38	phrog_38338	74.1	2.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-0074672_38	693746.OBV_25410	96.3	4.45e-24	N/A	N/A
KOfam	UHGV-0074672_50	K22300	60.3	4.5e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0074672_50	phrog_4	54.3	0.0000000000000036	transcriptional repressor	transcription regulation
UniRef90	UHGV-0074672_50	UniRef90_A0A1C6CFH8	118.0	1.61e-31	Putative zinc finger/helix-turn-helix protein, YgiT family	N/A
eggNOG-mapper	UHGV-0074672_50	903814.ELI_1263	118.0	3.04e-32	Helix-turn-helix domain	N/A
Pfam	UHGV-0074672_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0074672_50	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0074672_52	phrog_353	70.6	1.6e-20	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0074672_52	UniRef90_A0A3E3K2T1	120.0	1.55e-34	Type II toxin-antitoxin system HicA family toxin	N/A
eggNOG-mapper	UHGV-0074672_52	502558.EGYY_24930	107.0	2.83e-30	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-0074672_52	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-0074672_52	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-0074672_52	PF07927,COG1724	N/A	N/A	N/A	N/A
KOfam	UHGV-0074672_53	K18843	42.7	0.0000000000093	hicB; antitoxin HicB	N/A
PHROG	UHGV-0074672_53	phrog_497	70.7	3e-20	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0074672_53	UniRef90_A0A176U291	203.0	0	Toxin-antitoxin system, antitoxin component, HicB family	N/A
eggNOG-mapper	UHGV-0074672_53	397287.C807_03671	202.0	0	Toxin-antitoxin system, antitoxin component, HicB family	N/A
Pfam	UHGV-0074672_53	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0074672_53	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0074672_53	PF15919,COG1598	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0074672_56	1341157.RF007C_15645	53.9	0.00000142	N/A	N/A
structural_annotation	UHGV-0074672_56	PF13560,TIGR03070,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0074672_58	UniRef90_A0A174XWS3	68.6	0.000000000000846	Bacterial regulatory proteins, luxR family	N/A
eggNOG-mapper	UHGV-0074672_58	485916.Dtox_2202	58.5	0.0000000168	Plasmid pRiA4b ORF-3-like protein	N/A
Pfam	UHGV-0074672_58	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
structural_annotation	UHGV-0074672_58	PF00196,NF040595,COG2771	N/A	N/A	N/A	N/A
UniRef90	UHGV-0074672_59	UniRef90_A0A357JC47	49.3	0.00000139	RHH_5 domain-containing protein	N/A
Pfam	UHGV-0074672_59	PF08681	N/A	N/A	N/A	DUF1778
structural_annotation	UHGV-0074672_59	PF03869,NF010256,COG4877	N/A	N/A	N/A	N/A
KOfam	UHGV-0074672_61	K06400	348.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0074672_61	phrog_95	329.6	0	integrase	integration and excision
UniRef90	UHGV-0074672_61	UniRef90_UPI00106696FE	364.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0074672_61	665956.HMPREF1032_03589	365.0	0	N/A	N/A
Pfam	UHGV-0074672_61	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0074672_61	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0074672_61	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0074672_61	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0074672_61	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0074672	Yes	37,346	60	100	1
UHGV-0092274	No	39,033	60	100	1
UHGV-0086082	No	31,726	60	85	1
UHGV-2016402	No	28,227	61	76	1
UHGV-2131034	No	23,955	60	64	1
UHGV-0188924	No	15,822	61	42	1
UHGV-2134104	No	13,845	59	37	1