vOTU vOTU-014824

vOTU: vOTU-014824

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-014824
Number of genomes	3
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-02427 → vSUBGEN-19795 → vOTU-014824
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0133000
Biosample ID	SAMN02334049
Genome length (bp)	42,056 bps
CheckV completeness	99.90% (High-quality)
CDS count	68
CDS density	88.25%
tRNA count	4
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	429	Host agreement	98.83
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0133000_1	K14059	138.8	7.09996e-41	int; integrase	N/A
PHROG	UHGV-0133000_1	phrog_1	166.6	0	integrase	integration and excision
UniRef90	UHGV-0133000_1	UniRef90_A0A174D176	432.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0133000_1	411471.SUBVAR_05137	232.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0133000_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0133000_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0133000_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0133000_2	K15773	41.8	0.000000000022	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-0133000_2	phrog_2328	41.2	0.000000000016	transcriptional repressor	transcription regulation
UniRef90	UHGV-0133000_2	UniRef90_A0A6N7TLT0	208.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0133000_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0133000_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0133000_2	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0133000_8	phrog_8	45.4	0.0000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-0133000_8	UniRef90_A0A1V0QCF9	81.3	1.23e-17	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0133000_8	1226322.HMPREF1545_00148	77.0	1.16e-16	Transcriptional	N/A
Pfam	UHGV-0133000_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0133000_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0133000_8	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0133000_9	UniRef90_A0A1C7FQD9	78.2	1.55e-17	Transcriptional regulator	N/A
structural_annotation	UHGV-0133000_9	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0133000_12	phrog_373	199.8	0	anti-repressor	transcription regulation
UniRef90	UHGV-0133000_12	UniRef90_UPI001C039A6C	390.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0133000_12	748224.HMPREF9436_01449	173.0	0	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0133000_12	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0133000_12	PF10552	N/A	N/A	ORF6C domain	ORF6C
NCBIFam	UHGV-0133000_12	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0133000_12	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0133000_12	PF03374,PF09669,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0133000_14	760568.Desku_0919	97.8	1.88e-22	N/A	N/A
structural_annotation	UHGV-0133000_14	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0133000_15	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0133000_17	PF07870,COG3461	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0133000_18	PF14120	N/A	N/A	N/A	N/A
PHROG	UHGV-0133000_20	phrog_561	102.5	4.5e-30	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0133000_20	UniRef90_UPI0011C8A287	144.0	1.35e-39	recombinase RecT	N/A
eggNOG-mapper	UHGV-0133000_20	742733.HMPREF9469_01849	138.0	5.22e-38	N/A	N/A
structural_annotation	UHGV-0133000_20	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0133000_21	K03111	139.6	3.59994e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0133000_21	phrog_44	143.1	1.3004e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0133000_21	UniRef90_A0A844DI52	234.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0133000_21	718252.FP2_06770	209.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0133000_21	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0133000_21	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0133000_21	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0133000_21	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0133000_21	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0133000_22	phrog_15768	116.0	2e-34	N/A	unknown function
UniRef90	UHGV-0133000_22	UniRef90_A0A3F3JUK4	261.0	0	N/A	N/A
eggNOG-mapper	UHGV-0133000_22	748224.HMPREF9436_03357	135.0	4.7e-36	N/A	N/A
Pfam	UHGV-0133000_22	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0133000_22	PF19808	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0133000_23	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-0133000_25	phrog_757	230.4	0	DNA methyltransferase	other
UniRef90	UHGV-0133000_25	UniRef90_A0A3E2U1Y9	223.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0133000_25	748224.HMPREF9436_03069	222.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0133000_25	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0133000_25	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0133000_26	phrog_3136	112.5	1.4e-33	N/A	unknown function
UniRef90	UHGV-0133000_26	UniRef90_A0A6N7TMC2	160.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0133000_26	1235793.C809_02645	58.9	0.0000000706	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0133000_26	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0133000_26	PF12961,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0133000_27	K01160	60.7	4.5e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0133000_27	phrog_34	61.4	1.9e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0133000_27	UniRef90_A0A844DBG8	246.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0133000_27	875454.BAEW01000002_gene491	134.0	3.36e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0133000_27	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0133000_27	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0133000_27	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0133000_29	phrog_36	47.5	0.00000000000034	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0133000_29	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0133000_30	K06909	339.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0133000_30	phrog_3717	141.4	5.29971e-42	terminase large subunit	head and packaging
UniRef90	UHGV-0133000_30	UniRef90_A0A1Y4ES07	501.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0133000_30	665956.HMPREF1032_02957	465.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0133000_30	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
Pfam	UHGV-0133000_30	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0133000_30	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0133000_30	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0133000_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0133000_30	PF04466,PF16677,PF17289,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0133000_31	phrog_64	123.4	8.4e-37	portal protein	head and packaging
UniRef90	UHGV-0133000_31	UniRef90_A0A6N7TNT3	499.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0133000_31	673376.F2VHW1_9CAUD	172.0	1.4013e-45	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0133000_31	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0133000_31	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0133000_32	phrog_2468	77.2	1.2e-22	head morphogenesis	head and packaging
UniRef90	UHGV-0133000_32	UniRef90_A0A844DBI4	601.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0133000_32	1504822.CCNO01000013_gene286	131.0	3.5e-31	cell adhesion	N/A
Pfam	UHGV-0133000_32	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0133000_32	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0133000_32	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0133000_33	706437.HMPREF0813_02005	85.5	1.11e-19	N/A	N/A
PHROG	UHGV-0133000_34	phrog_8680	200.3	0	N/A	unknown function
UniRef90	UHGV-0133000_34	UniRef90_A0A844D688	454.0	0	N/A	N/A
eggNOG-mapper	UHGV-0133000_34	1423790.BN53_04265	183.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-0133000_34	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0133000_34	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0133000_34	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0133000_38	phrog_5	51.7	0.000000000000022	tail completion or Neck1 protein	connector
UniRef90	UHGV-0133000_38	UniRef90_A0A844DDB3	293.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0133000_38	1123309.AQYB01000018_gene814	93.6	1.99e-22	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0133000_38	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0133000_38	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0133000_38	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0133000_40	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0133000_41	phrog_544	141.9	4.69996e-42	major head protein	head and packaging
UniRef90	UHGV-0133000_41	UniRef90_R0BKA1	432.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0133000_41	476272.RUMHYD_01776	325.0	0	N/A	N/A
structural_annotation	UHGV-0133000_41	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0133000_43	phrog_17977	49.4	0.000000000000073	N/A	unknown function
UniRef90	UHGV-0133000_43	UniRef90_A0A844DHJ8	235.0	0	Phage head closure protein	N/A
structural_annotation	UHGV-0133000_43	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0133000_44	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0133000_45	phrog_885	65.2	8.2e-19	major tail protein	tail
UniRef90	UHGV-0133000_45	UniRef90_A0A843J9F0	124.0	2.32e-31	Ig-like domain-containing protein	N/A
COG	UHGV-0133000_45	COG2273	N/A	N/A	Beta-glucanase, GH16 family	N/A
structural_annotation	UHGV-0133000_45	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0133000_48	phrog_9959	87.8	6.9e-26	tail length tape measure protein	tail
UniRef90	UHGV-0133000_48	UniRef90_A0A844DDD5	392.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0133000_48	411470.RUMGNA_02228	142.0	2.88e-32	tape measure	N/A
Pfam	UHGV-0133000_48	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0133000_48	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0133000_48	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0133000_48	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0133000_49	phrog_3558	285.8	0	tail protein	tail
UniRef90	UHGV-0133000_49	UniRef90_UPI001C01D15B	764.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0133000_49	877414.ATWA01000019_gene2050	145.0	2.7e-33	Phage minor structural protein	N/A
Pfam	UHGV-0133000_49	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0133000_49	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0133000_49	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0133000_51	UniRef90_A0A1M6MWV9	75.5	0.000000000000298	Phage tail protein	N/A
eggNOG-mapper	UHGV-0133000_51	1111121.HMPREF1247_1241	75.1	0.0000000000000629	N/A	N/A
structural_annotation	UHGV-0133000_51	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0133000_52	phrog_4636	50.5	4.7e-17	tail spike protein	tail
KOfam	UHGV-0133000_53	K07273	163.7	0	acm; lysozyme	N/A
PHROG	UHGV-0133000_53	phrog_291	133.6	1.9e-39	endolysin	lysis
UniRef90	UHGV-0133000_53	UniRef90_UPI001D0EE7D8	305.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0133000_53	748224.HMPREF9436_00154	278.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0133000_53	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0133000_53	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0133000_53	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0133000_55	phrog_15303	82.9	2.9e-24	N/A	unknown function
KOfam	UHGV-0133000_56	K07741	49.6	0.00000000000013	antB; anti-repressor protein	N/A
PHROG	UHGV-0133000_56	phrog_63	129.5	3e-38	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0133000_56	UniRef90_A0A844D5R9	174.0	0	Phage regulatory protein/antirepressor Ant	N/A
eggNOG-mapper	UHGV-0133000_56	947981.E9LUT0_9CAUD	167.0	0	DNA binding	N/A
Pfam	UHGV-0133000_56	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0133000_56	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-0133000_56	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
structural_annotation	UHGV-0133000_56	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0133000_57	PF07342	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0133000_58	1160721.RBI_I00206	58.9	0.000000000141	N/A	N/A
structural_annotation	UHGV-0133000_58	PF19839,NF040976	N/A	N/A	N/A	N/A
PHROG	UHGV-0133000_59	phrog_3754	94.0	1.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-0133000_59	1485543.JMME01000025_gene2462	101.0	1.92e-26	N/A	N/A
PHROG	UHGV-0133000_60	phrog_21718	87.8	1.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0133000_60	397290.C810_05210	79.0	2.26e-16	N/A	N/A
PHROG	UHGV-0133000_61	phrog_22984	70.6	2.2e-20	N/A	unknown function
PHROG	UHGV-0133000_62	phrog_16490	196.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0133000_62	397290.C810_01328	126.0	1.52e-31	N/A	N/A
PHROG	UHGV-0133000_64	phrog_20016	201.6	0	N/A	unknown function
UniRef90	UHGV-0133000_64	UniRef90_A0A285PT46	200.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0133000_64	1226322.HMPREF1545_00077	182.0	0	N/A	N/A
structural_annotation	UHGV-0133000_64	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0133000_65	PF12510	N/A	N/A	N/A	N/A
UniRef90	UHGV-0133000_67	UniRef90_A0A3E2XNM2	58.2	0.0000000157	GNAT family acetyltransferase	N/A
eggNOG-mapper	UHGV-0133000_67	718252.FP2_18890	197.0	0	N/A	N/A
eggNOG-mapper	UHGV-0133000_68	657322.FPR_31600	69.3	0.000000000000101	N/A	N/A
COG	UHGV-0133000_68	COG3935	N/A	N/A	DNA replication protein DnaD	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0133000	Yes	42,056	53	100	1
UHGV-1381885	No	41,295	53	99	1
UHGV-0133228	No	41,287	53	99	1