vOTU vOTU-015925

vOTU: vOTU-015925

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-015925
Number of genomes	13
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii
Taxonomy (UHGV)	vFAM-00070 → vSUBFAM-01652 → vOTU-015925
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1502970
Biosample ID	N/A
Genome length (bp)	33,347 bps
CheckV completeness	73.57% (Medium-quality)
CDS count	59
CDS density	83.34%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	Total connections	219	Host agreement	80.82
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	Total connections	17	Host agreement	88.24

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 73.57)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1502970_1	K21919	106.4	2.7e-31	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-1502970_1	phrog_9562	119.4	5.5e-36	N/A	unknown function
UniRef90	UHGV-1502970_1	UniRef90_UPI001D005CED	236.0	0	pentapeptide repeat-containing protein	N/A
eggNOG-mapper	UHGV-1502970_1	1232443.BAIA02000078_gene49	164.0	0	Pentapeptide repeat protein	N/A
Pfam	UHGV-1502970_1	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
Pfam	UHGV-1502970_1	PF19062	N/A	N/A	N/A	DUF5758
COG	UHGV-1502970_1	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1502970_1	PF19062,PF13599,NF000139	N/A	N/A	N/A	N/A
PHROG	UHGV-1502970_3	phrog_253	95.8	4.6e-28	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1502970_3	UniRef90_A0A1C5N4H2	175.0	0	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-1502970_3	411470.RUMGNA_02192	133.0	1.46e-37	Siphovirus Gp157	N/A
Pfam	UHGV-1502970_3	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1502970_3	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1502970_4	phrog_14970	198.9	0	N/A	unknown function
UniRef90	UHGV-1502970_4	UniRef90_UPI00164BFA28	171.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-1502970_4	411469.EUBHAL_02677	149.0	9.87915e-43	double-strand break repair protein	N/A
Pfam	UHGV-1502970_4	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-1502970_4	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1502970_4	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1502970_5	phrog_1389	76.4	3.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-1502970_5	1347392.CCEZ01000060_gene3269	84.3	1.17e-19	N/A	N/A
structural_annotation	UHGV-1502970_5	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
KOfam	UHGV-1502970_6	K03111	146.6	2.49431e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1502970_6	phrog_44	151.1	5.60519e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1502970_6	UniRef90_A0A1C7FSG7	260.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1502970_6	445972.ANACOL_00151	166.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1502970_6	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1502970_6	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1502970_6	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1502970_6	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1502970_6	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1502970_7	phrog_15768	88.4	1.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1502970_7	203119.Cthe_2466	95.1	2.71e-22	N/A	N/A
KOfam	UHGV-1502970_8	K17680	177.0	0	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-1502970_8	phrog_239	157.2	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1502970_8	UniRef90_A0A1C7FRV3	840.0	0	SF4 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-1502970_8	1378168.N510_01441	389.0	0	N/A	N/A
Pfam	UHGV-1502970_8	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1502970_8	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1502970_8	PF03796,MF_04154,NF006606,COG0467	N/A	N/A	N/A	N/A
KOfam	UHGV-1502970_10	K01160	46.2	0.0000000000012	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1502970_10	phrog_4632	53.5	8e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1502970_10	UniRef90_A0A1V5ZUM0	118.0	1.37e-31	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1502970_10	469604.HMPREF0946_00819	62.4	0.0000000000824	N/A	N/A
structural_annotation	UHGV-1502970_10	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1502970_11	PF12759	N/A	N/A	N/A	N/A
PHROG	UHGV-1502970_12	phrog_757	184.2	0	DNA methyltransferase	other
UniRef90	UHGV-1502970_12	UniRef90_UPI00189BA758	442.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1502970_12	397290.C810_01487	330.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1502970_12	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1502970_12	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1502970_14	phrog_25732	53.2	3e-21	N/A	unknown function
structural_annotation	UHGV-1502970_14	PF21327,NF011240	N/A	N/A	N/A	N/A
PHROG	UHGV-1502970_15	phrog_1384	128.2	5.3e-38	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-1502970_15	428125.CLOLEP_01816	295.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-1502970_15	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1502970_16	NF000937	N/A	N/A	N/A	N/A
PHROG	UHGV-1502970_17	phrog_37865	90.7	1.7e-29	N/A	unknown function
PHROG	UHGV-1502970_18	phrog_38832	41.6	0.000000000012	N/A	unknown function
eggNOG-mapper	UHGV-1502970_18	665956.HMPREF1032_03087	99.4	3.86e-25	N/A	N/A
PHROG	UHGV-1502970_19	phrog_599	51.6	0.000000000000021	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-1502970_19	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1502970_19	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1502970_19	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1502970_19	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-1502970_20	phrog_22543	46.8	0.00000000000038	N/A	unknown function
PHROG	UHGV-1502970_24	phrog_801	98.9	6.6e-29	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-1502970_24	UniRef90_A0A810QB82	229.0	0	N/A	N/A
eggNOG-mapper	UHGV-1502970_24	1100790.H2ELW3_9CAUD	73.9	0.00000000000000196	Cytidine and deoxycytidylate deaminase zinc-binding region	N/A
Pfam	UHGV-1502970_24	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-1502970_24	PF18909	N/A	N/A	N/A	N/A
PHROG	UHGV-1502970_25	phrog_8684	78.6	1.3e-25	N/A	unknown function
UniRef90	UHGV-1502970_25	UniRef90_UPI001D00D0A2	191.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-1502970_25	1300150.EMQU_2285	116.0	9.86e-32	YopX protein	N/A
Pfam	UHGV-1502970_25	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-1502970_25	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1502970_27	phrog_924	55.5	0.0000000000000011	N/A	unknown function
UniRef90	UHGV-1502970_27	UniRef90_A0A6I7G0Z3	205.0	0	N/A	N/A
Pfam	UHGV-1502970_27	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1502970_27	NF041588	N/A	N/A	N/A	N/A
KOfam	UHGV-1502970_28	K04487	363.9	0	iscS, NFS1; cysteine desulfurase [EC:2.8.1.7]	N/A
PHROG	UHGV-1502970_28	phrog_12787	393.3	0	N/A	unknown function
UniRef90	UHGV-1502970_28	UniRef90_A0A6I7GH67	622.0	0	Cysteine desulfurase	N/A
eggNOG-mapper	UHGV-1502970_28	935948.KE386495_gene2114	275.0	0	Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins	N/A
PADLOC	UHGV-1502970_28	SspA_00001	302.8	0	SspA	SSP
Pfam	UHGV-1502970_28	PF00266	N/A	N/A	Aminotransferase class-V	Aminotran_5
COG	UHGV-1502970_28	COG1104	N/A	N/A	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	N/A
structural_annotation	UHGV-1502970_28	PF00266,MF_00331,TIGR03403,COG1104	N/A	N/A	N/A	N/A
PHROG	UHGV-1502970_30	phrog_22389	108.2	2.1e-32	N/A	unknown function
structural_annotation	UHGV-1502970_30	PF01402,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-1502970_31	UniRef90_UPI0019597901	53.5	0.00000747	replication/maintenance protein RepL	N/A
UniRef90	UHGV-1502970_32	UniRef90_G9YRT9	262.0	0	DnaB domain-containing protein	N/A
Pfam	UHGV-1502970_32	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
COG	UHGV-1502970_32	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1502970_34	PF20549,COG4728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1502970_35	411901.BACCAC_01162	49.3	0.000000247	N/A	N/A
UniRef90	UHGV-1502970_39	UniRef90_A0A3C0NMJ5	79.7	6.43e-18	Arc domain-containing protein	N/A
eggNOG-mapper	UHGV-1502970_39	1378168.N510_03076	60.1	0.0000000000333	N/A	N/A
eggNOG-mapper	UHGV-1502970_40	97139.C824_02759	127.0	4.32e-38	N/A	N/A
KOfam	UHGV-1502970_41	K19157	115.0	6.6e-34	yafQ; mRNA interferase YafQ [EC:3.1.-.-]	N/A
PHROG	UHGV-1502970_41	phrog_7251	110.6	5.8e-33	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1502970_41	UniRef90_UPI00189A1D80	192.0	0	type II toxin-antitoxin system YafQ family toxin	N/A
eggNOG-mapper	UHGV-1502970_41	97139.C824_02760	162.0	0	endonuclease activity	N/A
Pfam	UHGV-1502970_41	PF15738	N/A	N/A	Bacterial toxin of type II toxin-antitoxin system, YafQ	YafQ_toxin
NCBIFam	UHGV-1502970_41	TIGR02385.1	N/A	N/A	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	N/A
COG	UHGV-1502970_41	COG3041	N/A	N/A	mRNA-degrading endonuclease YafQ (mRNA interferase), toxin component of the YafQ-DinJ toxin-antitoxin module	N/A
structural_annotation	UHGV-1502970_41	PF15738,TIGR00053,COG3041	N/A	N/A	N/A	N/A
PHROG	UHGV-1502970_43	phrog_13890	86.0	8e-30	N/A	unknown function
UniRef90	UHGV-1502970_43	UniRef90_G9YP46	213.0	0	Arc-like DNA-binding protein	N/A
eggNOG-mapper	UHGV-1502970_43	1378168.N510_00539	74.3	7.39e-16	N/A	N/A
Pfam	UHGV-1502970_43	PF03869	N/A	N/A	Arc-like DNA binding domain	Arc
Pfam	UHGV-1502970_43	PF08681	N/A	N/A	N/A	DUF1778
eggNOG-mapper	UHGV-1502970_44	633147.Olsu_1237	47.8	0.00000114	N/A	N/A
PHROG	UHGV-1502970_45	phrog_7929	44.8	0.000000000002	N/A	unknown function
UniRef90	UHGV-1502970_45	UniRef90_UPI001D013B08	414.0	0	NYN domain-containing protein	N/A
eggNOG-mapper	UHGV-1502970_45	663278.Ethha_1443	236.0	0	NYN domain	N/A
Pfam	UHGV-1502970_45	PF01936	N/A	N/A	NYN domain	NYN
COG	UHGV-1502970_45	COG1432	N/A	N/A	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	N/A
structural_annotation	UHGV-1502970_45	PF01936,MF_04140,TIGR00288,COG1432	N/A	N/A	N/A	N/A
UniRef90	UHGV-1502970_46	UniRef90_A0A351F9G2	47.8	0.00000984	RHH_1 domain-containing protein	N/A
structural_annotation	UHGV-1502970_46	PF01402,NF040976,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-1502970_47	K04763	194.4	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1502970_47	phrog_1	171.0	0	integrase	integration and excision
UniRef90	UHGV-1502970_47	UniRef90_G9YP38	589.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-1502970_47	883069.HMPREF9238_00245	99.8	2.34e-21	Belongs to the 'phage' integrase family. XerC subfamily	N/A
Pfam	UHGV-1502970_47	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-1502970_47	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1502970_47	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1502970_47	PF00589,PF02899,MF_01808,TIGR02225,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1502970_48	phrog_21357	310.6	0	endolysin	lysis
UniRef90	UHGV-1502970_48	UniRef90_G9YP37	509.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1502970_48	97139.C824_00684	195.0	0	lysozyme activity	N/A
COG	UHGV-1502970_48	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1502970_48	PF10030,TIGR02594,COG4322	N/A	N/A	N/A	N/A
PHROG	UHGV-1502970_49	phrog_18218	70.0	3.4e-20	N/A	unknown function
eggNOG-mapper	UHGV-1502970_49	693746.OBV_18280	137.0	1.75e-40	N/A	N/A
structural_annotation	UHGV-1502970_49	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1502970_51	phrog_937	86.4	2.7e-25	hemolysin	other
PHROG	UHGV-1502970_52	phrog_19111	66.8	4.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-1502970_52	1121335.Clst_0408	55.1	0.00000892	ATPase involved in DNA repair	N/A
COG	UHGV-1502970_52	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
UniRef90	UHGV-1502970_53	UniRef90_A0A1C6J8E7	101.0	1.68e-19	Nitrous oxide reductase family maturation protein NosD	N/A
eggNOG-mapper	UHGV-1502970_53	1120998.AUFC01000016_gene5	99.0	4.14e-19	alginic acid biosynthetic process	N/A
COG	UHGV-1502970_53	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1502970_54	PF05606,MF_00075,TIGR00008,COG0361	N/A	N/A	N/A	N/A
PHROG	UHGV-1502970_55	phrog_1770	101.4	9e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1502970_55	UniRef90_K9RSM4	97.4	5.22e-23	Holliday junction resolvasome, endonuclease subunit	N/A
eggNOG-mapper	UHGV-1502970_55	195253.Syn6312_0894	97.4	8.76e-24	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	N/A
COG	UHGV-1502970_55	COG0817	N/A	N/A	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	N/A
structural_annotation	UHGV-1502970_55	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-1502970_56	phrog_1887	290.0	0	tail protein	tail
UniRef90	UHGV-1502970_57	UniRef90_A0A2Z4QBF5	135.0	4.5e-38	Putative RNA binding protein	N/A
eggNOG-mapper	UHGV-1502970_57	1232443.BAIA02000078_gene12	114.0	1.62e-30	N/A	N/A
KOfam	UHGV-1502970_58	K10455	56.6	2.3e-16	KLHL18; kelch-like protein 18	N/A
PHROG	UHGV-1502970_58	phrog_19111	913.0	0	N/A	unknown function
UniRef90	UHGV-1502970_58	UniRef90_UPI00189979BF	917.0	0	kelch motif-containing protein	N/A
eggNOG-mapper	UHGV-1502970_58	1499967.BAYZ01000016_gene6532	107.0	4.23e-21	cellulose 1,4-beta-cellobiosidase activity	N/A
Pfam	UHGV-1502970_58	PF01344	N/A	N/A	Kelch motif	Kelch_1
COG	UHGV-1502970_58	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1502970	Yes	33,347	52	74	1
UHGV-1439983	No	38,574	51	57	1
UHGV-1773470	No	30,775	52	44	1
UHGV-0482134	No	45,037	51	42	1
UHGV-0420941	No	45,036	51	42	1
UHGV-1798260	No	25,395	51	34	1
UHGV-1708681	No	24,776	51	34	1
UHGV-1622467	No	25,191	52	34	1
UHGV-0211242	No	24,306	52	33	1
UHGV-1757700	No	22,568	52	30	1
UHGV-0821076	No	10,139	51	22	1
UHGV-0448155	No	10,039	50	22	1
UHGV-1952335	No	10,857	52	10	1