vOTU vOTU-016086

vOTU: vOTU-016086

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-016086
Number of genomes	11
Taxonomy (ICTV)	Bacteria → Firmicutes_A
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-00048 → vGENUS-00024 → vOTU-016086
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0141284
Biosample ID	SAMN05214691
Genome length (bp)	40,308 bps
CheckV completeness	68.33% (Medium-quality)
CDS count	63
CDS density	90.29%
tRNA count	5
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis	Total connections	3438	Host agreement	76.44
PHIST-predicted host lineage	Bacteria → Firmicutes_A	Total connections	2	Host agreement	50

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 68.33)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0141284_2	phrog_6493	123.7	1.2e-36	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0141284_2	UniRef90_UPI001020B14A	109.0	4.68e-24	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0141284_2	1029718.SFBM_0770	129.0	4.18e-32	DnaD domain protein	N/A
COG	UHGV-0141284_2	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0141284_2	PF07106,NF040642,COG3355	N/A	N/A	N/A	N/A
UniRef90	UHGV-0141284_3	UniRef90_A0A8D9PGW1	128.0	9e-38	HTH psq-type domain-containing protein	N/A
structural_annotation	UHGV-0141284_3	PF05225,COG2886	N/A	N/A	N/A	N/A
UniRef90	UHGV-0141284_6	UniRef90_A0A8D9PG44	166.0	0	Tax1-binding protein	N/A
UniRef90	UHGV-0141284_10	UniRef90_A0A8D9PGN8	177.0	0	Acetyl-coA carboxylase zinc finger domain protein	N/A
PHROG	UHGV-0141284_13	phrog_2316	57.1	4.2e-16	N/A	unknown function
UniRef90	UHGV-0141284_13	UniRef90_A0A3E4YBW5	174.0	0	N/A	N/A
eggNOG-mapper	UHGV-0141284_13	1227349.C170_11270	57.4	0.00000000176	N/A	N/A
structural_annotation	UHGV-0141284_13	PF16475,MF_00436,NF033216,COG1923	N/A	N/A	N/A	N/A
UniRef90	UHGV-0141284_14	UniRef90_UPI0011072322	76.6	9.51e-16	N/A	N/A
eggNOG-mapper	UHGV-0141284_14	1256908.HMPREF0373_00479	72.8	0.00000000000000474	N/A	N/A
structural_annotation	UHGV-0141284_14	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0141284_15	phrog_38	145.4	4.2039e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0141284_15	UniRef90_A0A8D9UIV2	1004.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0141284_15	397290.C810_01390	677.0	0	chromosome segregation	N/A
COG	UHGV-0141284_15	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0141284_15	PF17289,PF03237,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0141284_16	phrog_9529	76.2	4.3e-22	N/A	unknown function
UniRef90	UHGV-0141284_16	UniRef90_UPI000836A084	84.0	1.2e-16	N/A	N/A
eggNOG-mapper	UHGV-0141284_16	202752.JL53_03720	60.1	0.0000000295	N/A	N/A
Pfam	UHGV-0141284_16	PF04480	N/A	N/A	N/A	DUF559
COG	UHGV-0141284_16	COG2852	N/A	N/A	Very-short-patch-repair endonuclease	N/A
PHROG	UHGV-0141284_17	phrog_36	72.7	6.3e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0141284_17	UniRef90_A0A6N7XL46	82.4	3.55e-17	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0141284_17	1123288.SOV_6c01520	77.4	3.8e-16	sigma factor activity	N/A
Pfam	UHGV-0141284_17	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0141284_17	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0141284_17	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0141284_18	phrog_64	147.4	7.9874e-44	portal protein	head and packaging
UniRef90	UHGV-0141284_18	UniRef90_A0A412RQZ0	988.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0141284_18	1232453.BAIF02000058_gene1625	340.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0141284_18	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0141284_18	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0141284_19	phrog_2468	56.5	3.3e-16	head morphogenesis	head and packaging
UniRef90	UHGV-0141284_19	UniRef90_A0A412RR50	397.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0141284_19	1176423.I6R1H0_9VIRU	55.5	0.0000015	Phage Mu protein F like protein	N/A
Pfam	UHGV-0141284_19	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
structural_annotation	UHGV-0141284_19	PF04233,TIGR01641	N/A	N/A	N/A	N/A
UniRef90	UHGV-0141284_20	UniRef90_UPI000E41BB01	54.7	0.00000609	N/A	N/A
PHROG	UHGV-0141284_21	phrog_909	77.8	1.1e-22	major head protein	head and packaging
UniRef90	UHGV-0141284_21	UniRef90_R7BGI8	195.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0141284_21	1078085.HMPREF1210_01145	60.8	0.00000000017	N/A	N/A
PHROG	UHGV-0141284_22	phrog_29	150.5	1.26117e-44	major head protein	head and packaging
UniRef90	UHGV-0141284_22	UniRef90_A0A412RQU1	652.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0141284_22	1118054.CAGW01000102_gene4700	173.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0141284_22	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0141284_22	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0141284_23	UniRef90_A0A8D9UIY7	59.7	0.000000000741	Rho termination factor	N/A
structural_annotation	UHGV-0141284_23	PF21169	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0141284_24	397290.C810_01402	64.7	0.0000000000119	N/A	N/A
PHROG	UHGV-0141284_25	phrog_1863	54.8	7.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-0141284_25	1232452.BAIB02000007_gene1606	58.2	0.00000000224	N/A	N/A
PHROG	UHGV-0141284_26	phrog_18218	137.5	3.89995e-41	N/A	unknown function
UniRef90	UHGV-0141284_26	UniRef90_A0A8D9PGR5	185.0	0	Holin	N/A
eggNOG-mapper	UHGV-0141284_26	411902.CLOBOL_03424	79.3	8.84e-18	N/A	N/A
structural_annotation	UHGV-0141284_26	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0141284_27	1298920.KI911353_gene2656	61.6	0.000000000398	N/A	N/A
structural_annotation	UHGV-0141284_27	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0141284_28	1232453.BAIF02000058_gene1631	115.0	4.38e-30	N/A	N/A
AcrCatalog	UHGV-0141284_28	cluster_24841	145.0	0	NA	N/A
structural_annotation	UHGV-0141284_29	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0141284_30	UniRef90_R7BGF5	90.5	6.26e-20	Phage tail protein	N/A
structural_annotation	UHGV-0141284_30	PF16463,TIGR02126,COG5437	N/A	N/A	N/A	N/A
KOfam	UHGV-0141284_33	K07273	156.7	0	acm; lysozyme	N/A
PHROG	UHGV-0141284_33	phrog_291	131.3	9.7e-39	endolysin	lysis
UniRef90	UHGV-0141284_33	UniRef90_A0A174GRH8	578.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0141284_33	1235800.C819_00458	230.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0141284_33	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0141284_33	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0141284_33	PF01183,PF01471,MF_01672,COG3757,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0141284_34	phrog_1535	200.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0141284_34	UniRef90_A0A1I0JNI7	211.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0141284_34	1232443.BAIA02000078_gene18	197.0	0	phage tail tape measure protein	N/A
COG	UHGV-0141284_34	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0141284_35	phrog_1194	114.9	4.2e-34	N/A	unknown function
eggNOG-mapper	UHGV-0141284_35	997830.HMPREF1124_0608	79.3	1.55e-17	N/A	N/A
Pfam	UHGV-0141284_35	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0141284_35	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0141284_36	phrog_6616	505.2	0	tail protein	tail
UniRef90	UHGV-0141284_36	UniRef90_A0A412RR71	1437.0	0	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0141284_36	476272.RUMHYD_01992	352.0	0	N/A	N/A
Pfam	UHGV-0141284_36	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0141284_36	PF05113,PF20010,NF033848,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0141284_37	1121866.AUGK01000003_gene1445	69.7	0.0000000000104	N/A	N/A
Pfam	UHGV-0141284_37	PF11839	N/A	N/A	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
PHROG	UHGV-0141284_38	phrog_5302	319.2	0	tail protein	tail
UniRef90	UHGV-0141284_38	UniRef90_A0A345BPB9	263.0	0	Lectin	N/A
eggNOG-mapper	UHGV-0141284_38	665956.HMPREF1032_00690	301.0	0	N/A	N/A
structural_annotation	UHGV-0141284_38	COG1262	N/A	N/A	N/A	N/A
PHROG	UHGV-0141284_39	phrog_20201	50.0	0.000000000000061	N/A	unknown function
PHROG	UHGV-0141284_40	phrog_806	40.6	0.000000000024	N/A	unknown function
UniRef90	UHGV-0141284_40	UniRef90_A0A395Z832	60.5	0.000000176	N/A	N/A
eggNOG-mapper	UHGV-0141284_40	1280676.AUJO01000001_gene2313	58.2	0.000000878	N/A	N/A
Pfam	UHGV-0141284_40	PF11611	N/A	N/A	N/A	DUF4352
structural_annotation	UHGV-0141284_40	PF11611,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-0141284_41	phrog_3845	48.0	0.00000000000024	N/A	unknown function
KOfam	UHGV-0141284_42	K22300	56.8	5.1e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0141284_42	phrog_2967	55.2	0.0000000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0141284_42	UniRef90_A0A412RR31	202.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0141284_42	1304866.K413DRAFT_0834	89.4	1.52e-21	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0141284_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0141284_42	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0141284_42	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0141284_43	UniRef90_A0A412RQX5	141.0	1.24996e-42	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0141284_43	1232449.BAHV02000016_gene1846	65.1	0.00000000000617	Peptidase S24-like	N/A
Pfam	UHGV-0141284_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0141284_43	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0141284_43	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0141284_44	phrog_463	202.0	0	anti-repressor	transcription regulation
UniRef90	UHGV-0141284_44	UniRef90_A0A412RQX1	357.0	0	Phage repressor protein	N/A
eggNOG-mapper	UHGV-0141284_44	596329.HMPREF0631_1352	187.0	0	BRO family, N-terminal domain protein	N/A
Pfam	UHGV-0141284_44	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0141284_44	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0141284_44	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0141284_44	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0141284_46	742765.HMPREF9457_03017	107.0	8.98e-26	peptidase	N/A
COG	UHGV-0141284_46	COG4942	N/A	N/A	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	N/A
KOfam	UHGV-0141284_48	K19171	80.0	2.5e-23	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-0141284_48	phrog_77	170.0	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0141284_48	UniRef90_A0A412RQV0	967.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0141284_48	397290.C810_01461	385.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-0141284_48	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0141284_48	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0141284_48	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
KOfam	UHGV-0141284_51	K07455	169.3	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0141284_51	phrog_148	162.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0141284_51	UniRef90_A0A1C5WMV6	369.0	0	p33	N/A
eggNOG-mapper	UHGV-0141284_51	431943.CKL_0416	239.0	0	RecT family	N/A
Pfam	UHGV-0141284_51	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0141284_51	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0141284_51	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0141284_51	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0141284_53	phrog_25456	74.1	1.7e-21	N/A	unknown function
PHROG	UHGV-0141284_54	phrog_392	116.1	2e-34	metal-dependent hydrolase	other
UniRef90	UHGV-0141284_54	UniRef90_A0A412RQX2	354.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0141284_54	1232453.BAIF02000057_gene1138	109.0	1.01e-27	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
COG	UHGV-0141284_54	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0141284_54	PF02112,MF_00457,NF041851,COG2220	N/A	N/A	N/A	N/A
PHROG	UHGV-0141284_56	phrog_8684	106.3	4.1e-32	N/A	unknown function
UniRef90	UHGV-0141284_56	UniRef90_A0A3D5WQK7	114.0	6.29e-30	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0141284_56	742733.HMPREF9469_00912	85.1	2.93e-19	YopX protein	N/A
Pfam	UHGV-0141284_56	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0141284_56	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0141284_56	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-0141284_57	K03111	118.2	1.2e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0141284_57	phrog_44	126.3	2.6e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0141284_57	UniRef90_A0A412RR48	274.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0141284_57	397290.C810_01495	194.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0141284_57	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0141284_57	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0141284_57	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0141284_57	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0141284_57	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0141284_58	phrog_20593	55.4	0.000000000000001	N/A	unknown function
PHROG	UHGV-0141284_60	phrog_19106	280.7	0	N/A	unknown function
UniRef90	UHGV-0141284_60	UniRef90_A0A412RQV5	369.0	0	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-0141284_60	658655.HMPREF0988_00875	224.0	0	N/A	N/A
structural_annotation	UHGV-0141284_60	TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-0141284_62	K07319	50.3	0.000000000000034	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0141284_62	phrog_67	46.6	0.00000000000058	DNA methyltransferase	other
eggNOG-mapper	UHGV-0141284_62	357804.Ping_0705	52.4	0.00000259	Belongs to the N(4) N(6)-methyltransferase family	N/A
COG	UHGV-0141284_62	COG0863	N/A	N/A	DNA modification methylase	N/A
KOfam	UHGV-0141284_63	K00133	158.0	0	asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]	N/A
PHROG	UHGV-0141284_63	phrog_27440	54.7	0.0000000000000024	N/A	unknown function
UniRef90	UHGV-0141284_63	UniRef90_UPI00125CE837	181.0	0	aspartate-semialdehyde dehydrogenase	N/A
eggNOG-mapper	UHGV-0141284_63	1349822.NSB1T_01250	224.0	0	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate	N/A
Pfam	UHGV-0141284_63	PF02774	N/A	N/A	Semialdehyde dehydrogenase, dimerisation domain	Semialdhyde_dhC
COG	UHGV-0141284_63	COG0136	N/A	N/A	Aspartate-semialdehyde dehydrogenase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0141284	Yes	40,308	39	68	1
UHGV-1749565	No	29,134	40	49	1
UHGV-0154121	No	29,097	40	49	1
UHGV-1648916	No	22,821	41	39	1
UHGV-0145468	No	22,257	41	38	1
UHGV-1754173	No	20,313	41	34	1
UHGV-1713535	No	20,124	41	34	1
UHGV-1564295	No	19,660	41	33	1
UHGV-0192195	No	16,185	41	27	1
UHGV-0144734	No	14,603	41	25	1
UHGV-0196527	No	12,663	41	21	1