vOTU vOTU-016557

vOTU: vOTU-016557

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-016557
Number of genomes	8
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00027 → vGENUS-08661 → vOTU-016557
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0170243
Biosample ID	SAMN06233224
Genome length (bp)	36,766 bps
CheckV completeness	80.12% (Medium-quality)
CDS count	47
CDS density	93.55%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1089	Host agreement	78.6
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	275	Host agreement	82.18

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 80.12)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0170243_1	phrog_20637	55.3	0.0000000000000012	N/A	unknown function
UniRef90	UHGV-0170243_1	UniRef90_A0A3D2HPD9	326.0	0	Catalase	N/A
eggNOG-mapper	UHGV-0170243_1	1160721.RBI_I00418	241.0	0	N/A	N/A
Pfam	UHGV-0170243_1	PF18907	N/A	N/A	N/A	DUF5662
structural_annotation	UHGV-0170243_1	PF18907	N/A	N/A	N/A	N/A
UniRef90	UHGV-0170243_2	UniRef90_UPI001C10E8F8	353.0	0	N/A	N/A
eggNOG-mapper	UHGV-0170243_2	428125.CLOLEP_01608	239.0	0	N/A	N/A
Pfam	UHGV-0170243_2	PF19538	N/A	N/A	N/A	DUF6062
PHROG	UHGV-0170243_5	phrog_18190	53.7	2.3e-23	N/A	unknown function
structural_annotation	UHGV-0170243_5	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0170243_6	phrog_1194	60.5	2.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0170243_6	397290.C810_05238	94.4	7.23e-23	N/A	N/A
Pfam	UHGV-0170243_6	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0170243_6	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0170243_7	phrog_1535	424.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0170243_7	UniRef90_A0A2N0ULX3	1404.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0170243_7	33035.JPJF01000093_gene2243	346.0	0	phage tail tape measure protein	N/A
COG	UHGV-0170243_7	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0170243_7	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0170243_10	phrog_706	139.5	1.99993e-41	N/A	unknown function
UniRef90	UHGV-0170243_10	UniRef90_A0A2N0ULW2	369.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0170243_10	1160721.RBI_II00530	211.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0170243_10	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0170243_10	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0170243_11	phrog_11299	136.2	1.7e-40	N/A	unknown function
eggNOG-mapper	UHGV-0170243_11	1298920.KI911353_gene2067	75.1	0.00000000000000346	N/A	N/A
structural_annotation	UHGV-0170243_11	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0170243_12	phrog_3099	149.7	1.26117e-44	N/A	unknown function
eggNOG-mapper	UHGV-0170243_12	1160721.RBI_II00532	237.0	0	N/A	N/A
structural_annotation	UHGV-0170243_12	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0170243_13	phrog_3266	104.4	7.7e-31	tail completion	connector
eggNOG-mapper	UHGV-0170243_13	1449050.JNLE01000003_gene3885	145.0	1.32002e-42	N/A	N/A
structural_annotation	UHGV-0170243_13	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0170243_14	phrog_556	117.8	3.3e-35	minor head protein	head and packaging
UniRef90	UHGV-0170243_14	UniRef90_UPI00189BC4F9	182.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0170243_14	1449050.JNLE01000003_gene3886	173.0	0	N/A	N/A
Pfam	UHGV-0170243_14	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0170243_14	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0170243_15	phrog_3366	71.4	1.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0170243_15	1449050.JNLE01000003_gene3887	83.6	8.07e-19	N/A	N/A
Pfam	UHGV-0170243_15	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0170243_15	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0170243_16	phrog_541	80.5	1.9e-23	head-tail adaptor	connector
UniRef90	UHGV-0170243_16	UniRef90_A0A371AQT0	109.0	1.94e-28	N/A	N/A
eggNOG-mapper	UHGV-0170243_16	1449050.JNLE01000003_gene3888	82.4	1.2e-18	N/A	N/A
PHROG	UHGV-0170243_17	phrog_422	231.4	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0170243_17	693746.OBV_18090	398.0	0	N/A	N/A
structural_annotation	UHGV-0170243_17	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0170243_18	phrog_194	101.9	8.1e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-0170243_18	UniRef90_A0A2N0ULW9	340.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0170243_18	742765.HMPREF9457_02126	175.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0170243_18	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0170243_18	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0170243_19	phrog_2616	44.9	0.0000000000025	N/A	unknown function
structural_annotation	UHGV-0170243_19	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-0170243_21	phrog_581	315.6	0	minor head protein	head and packaging
UniRef90	UHGV-0170243_21	UniRef90_A0A2N0ULU5	744.0	0	Putative ADP-ribosyltransferase Certhrax	N/A
eggNOG-mapper	UHGV-0170243_21	411470.RUMGNA_02213	368.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0170243_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0170243_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0170243_21	PF06152,PF15887,TIGR01641,COG4307	N/A	N/A	N/A	N/A
PHROG	UHGV-0170243_22	phrog_533	325.8	0	portal protein	head and packaging
UniRef90	UHGV-0170243_22	UniRef90_A0A2N0ULU9	862.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0170243_22	1304866.K413DRAFT_3035	471.0	0	N/A	N/A
structural_annotation	UHGV-0170243_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0170243_23	K06909	397.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0170243_23	phrog_3717	146.5	5.60519e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0170243_23	UniRef90_A0A2N0ULW5	1030.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0170243_23	411461.DORFOR_01162	618.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0170243_23	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0170243_23	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0170243_23	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0170243_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0170243_23	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0170243_24	phrog_36	80.1	3.3e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0170243_24	UniRef90_A0A2N0UXQ6	264.0	0	N/A	N/A
eggNOG-mapper	UHGV-0170243_24	1401067.HMPREF0872_06835	93.6	1.46e-22	N/A	N/A
Pfam	UHGV-0170243_24	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0170243_24	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0170243_25	phrog_8684	98.2	4.1e-30	N/A	unknown function
UniRef90	UHGV-0170243_25	UniRef90_A0A374DV44	173.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0170243_25	411473.RUMCAL_00280	78.2	8.52e-17	YopX protein	N/A
Pfam	UHGV-0170243_25	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0170243_25	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0170243_25	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0170243_28	PF02559,MF_00667,TIGR02861	N/A	N/A	N/A	N/A
KOfam	UHGV-0170243_29	K01160	40.2	0.000000000088	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0170243_29	phrog_140	94.8	1e-27	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0170243_29	UniRef90_A0A2N0UXU6	258.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0170243_29	1235798.C817_03497	204.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0170243_29	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0170243_29	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0170243_29	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0170243_30	K07505	409.5	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0170243_30	phrog_2597	1172.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0170243_30	UniRef90_A0A2N0UXP7	1442.0	0	Regulatory protein RepA	N/A
eggNOG-mapper	UHGV-0170243_30	394503.Ccel_3304	959.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0170243_30	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0170243_30	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0170243_30	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0170243_30	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0170243_31	K17677	362.8	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0170243_31	phrog_16	297.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0170243_31	UniRef90_A0A412ULZ3	1046.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-0170243_31	1235792.C808_05388	844.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0170243_31	mREase_IV_00005	134.3	1.1e-39	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0170243_31	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0170243_31	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0170243_31	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0170243_31	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0170243_32	phrog_2698	176.4	0	N/A	unknown function
UniRef90	UHGV-0170243_32	UniRef90_UPI000F54335B	197.0	0	N/A	N/A
eggNOG-mapper	UHGV-0170243_32	742723.HMPREF9477_00927	138.0	3e-39	N/A	N/A
structural_annotation	UHGV-0170243_32	PF17426,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-0170243_33	phrog_124	261.3	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0170243_33	UniRef90_A0A2N0UXR5	668.0	0	Phage nucleotide-binding protein	N/A
eggNOG-mapper	UHGV-0170243_33	411462.DORLON_00811	427.0	0	AAA domain	N/A
Pfam	UHGV-0170243_33	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0170243_33	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0170243_35	K03546	57.1	1.8e-16	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0170243_35	phrog_1499	480.4	0	N/A	unknown function
UniRef90	UHGV-0170243_35	UniRef90_A0A2N0UXU2	755.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0170243_35	645991.Sgly_0320	503.0	0	domain protein	N/A
Pfam	UHGV-0170243_35	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0170243_35	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0170243_35	TIGR03185,COG5293	N/A	N/A	N/A	N/A
PHROG	UHGV-0170243_36	phrog_323	75.1	1.3e-24	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0170243_36	UniRef90_UPI001C01CFF8	293.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-0170243_36	394503.Ccel_3305	337.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
dbAPIS	UHGV-0170243_36	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-0170243_36	PF11112,NF040595	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0170243_38	1235835.C814_03153	46.6	0.00000999	N/A	N/A
structural_annotation	UHGV-0170243_38	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0170243_41	K15773	50.7	0.000000000000039	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-0170243_41	phrog_3	49.2	0.00000000000024	transcriptional repressor	transcription regulation
UniRef90	UHGV-0170243_41	UniRef90_A0A374N3U7	128.0	1.27e-37	XRE family transcriptional regulator	N/A
Pfam	UHGV-0170243_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0170243_41	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0170243_41	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0170243_42	phrog_3773	51.9	0.000000000000013	N/A	unknown function
structural_annotation	UHGV-0170243_42	PF01423,MF_00257,NF041667	N/A	N/A	N/A	N/A
KOfam	UHGV-0170243_44	K18830	53.2	0.0000000000000076	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0170243_44	phrog_8	44.3	0.0000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0170243_44	UniRef90_A0A1G5CKS8	200.0	0	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0170243_44	537013.CLOSTMETH_02500	100.0	1.2e-25	N/A	N/A
Pfam	UHGV-0170243_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0170243_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0170243_44	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0170243_45	phrog_5783	297.7	0	N/A	unknown function
UniRef90	UHGV-0170243_45	UniRef90_R5XZX4	275.0	0	NYN domain-containing protein	N/A
eggNOG-mapper	UHGV-0170243_45	742742.HMPREF9452_01315	262.0	0	NYN domain	N/A
Pfam	UHGV-0170243_45	PF01936	N/A	N/A	NYN domain	NYN
COG	UHGV-0170243_45	COG1432	N/A	N/A	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	N/A
structural_annotation	UHGV-0170243_45	PF01936,TIGR00288,COG1432	N/A	N/A	N/A	N/A
PHROG	UHGV-0170243_46	phrog_7395	103.5	1.5e-30	N/A	unknown function
UniRef90	UHGV-0170243_46	UniRef90_A0A417IT12	126.0	1.4e-33	N/A	N/A
eggNOG-mapper	UHGV-0170243_46	29306.JOBE01000009_gene6854	60.5	0.00000000429	N/A	N/A
Pfam	UHGV-0170243_46	PF14015	N/A	N/A	N/A	DUF4231
NCBIFam	UHGV-0170243_46	NF033634.1	N/A	N/A	SLATT domain-containing protein	N/A
PHROG	UHGV-0170243_47	phrog_419	81.5	1.3e-25	N/A	unknown function
UniRef90	UHGV-0170243_47	UniRef90_A0A096BXT9	102.0	2.63e-27	Sugar ABC transporter substrate-binding protein	N/A
eggNOG-mapper	UHGV-0170243_47	1401067.HMPREF0872_03940	102.0	4.41e-28	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0170243	Yes	36,766	41	80	1
UHGV-0058671	No	35,286	42	77	1
UHGV-1385505	No	31,443	42	68	1
UHGV-1471898	No	30,746	42	67	1
UHGV-1853145	No	30,669	42	67	1
UHGV-1507464	No	25,661	42	56	1
UHGV-1762257	No	15,096	42	34	1
UHGV-0379722	No	13,892	41	34	1