vOTU vOTU-016654

vOTU: vOTU-016654

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-016654
Number of genomes	11
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → SFEL01 → SFEL01 sp004557245
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-02495 → vOTU-016654
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → SFEL01 → SFEL01 sp004557245
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0210105
Biosample ID	SAMN10290186
Genome length (bp)	30,266 bps
CheckV completeness	81.30% (Medium-quality)
CDS count	47
CDS density	93.41%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → SFEL01 → SFEL01 sp004557245	Total connections	465	Host agreement	96.34
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → SFEL01 → SFEL01 sp004557245	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 81.3)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0210105_2	phrog_9	293.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0210105_2	UniRef90_A0A0D8IV16	907.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0210105_2	1226322.HMPREF1545_00113	807.0	0	Phage Terminase	N/A
Pfam	UHGV-0210105_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0210105_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0210105_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0210105_2	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0210105_3	phrog_12	177.4	0	portal protein	head and packaging
UniRef90	UHGV-0210105_3	UniRef90_A0A0D8IVL0	549.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0210105_3	1226322.HMPREF1545_00114	467.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0210105_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0210105_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0210105_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0210105_3	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0210105_4	K06904	157.4	0	N/A	N/A
PHROG	UHGV-0210105_4	phrog_80	177.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0210105_4	UniRef90_U2SBX0	261.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-0210105_4	1226322.HMPREF1545_00115	261.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0210105_4	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0210105_4	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0210105_4	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0210105_4	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0210105_5	phrog_10	186.3	0	major head protein	head and packaging
UniRef90	UHGV-0210105_5	UniRef90_A0A1C6H720	614.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0210105_5	1226322.HMPREF1545_00116	553.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0210105_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0210105_5	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0210105_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0210105_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0210105_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0210105_6	phrog_2550	69.7	2.6e-20	N/A	unknown function
UniRef90	UHGV-0210105_6	UniRef90_R5V091	85.9	5.75e-20	Phage related protein	N/A
eggNOG-mapper	UHGV-0210105_6	1226322.HMPREF1545_00117	92.0	3.57e-23	N/A	N/A
structural_annotation	UHGV-0210105_6	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0210105_7	phrog_19734	79.3	5e-23	N/A	unknown function
UniRef90	UHGV-0210105_7	UniRef90_A0A3R6AW46	69.7	0.000000000000492	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0210105_7	1235798.C817_04587	68.6	0.000000000000217	N/A	N/A
structural_annotation	UHGV-0210105_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0210105_8	1232446.BAIE02000002_gene829	103.0	1.76e-27	N/A	N/A
structural_annotation	UHGV-0210105_8	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0210105_9	phrog_5	48.9	0.00000000000015	tail completion or Neck1 protein	connector
UniRef90	UHGV-0210105_9	UniRef90_A0A1C6FG30	145.0	2.34003e-41	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0210105_9	908340.HMPREF9406_2573	119.0	3.15e-32	N/A	N/A
structural_annotation	UHGV-0210105_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0210105_10	phrog_88	90.4	1.9e-26	major tail protein	tail
UniRef90	UHGV-0210105_10	UniRef90_G9YSC5	105.0	7.38e-25	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0210105_10	33035.JPJF01000039_gene278	68.9	0.000000000011	N/A	N/A
NCBIFam	UHGV-0210105_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0210105_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0210105_13	phrog_8462	93.3	3.3e-27	tail length tape measure protein	tail
UniRef90	UHGV-0210105_13	UniRef90_A0A7X6UMX1	159.0	7.81e-40	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0210105_13	498761.HM1_2969	173.0	5.46506e-44	nuclear chromosome segregation	N/A
COG	UHGV-0210105_13	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0210105_13	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0210105_14	phrog_33	93.0	5.4e-27	distal tail protein Dit	tail
UniRef90	UHGV-0210105_14	UniRef90_A0A173Z1X4	196.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0210105_14	1262449.CP6013_2095	108.0	4.66e-26	tail component	N/A
Pfam	UHGV-0210105_14	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0210105_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0210105_14	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0210105_15	phrog_1067	363.1	0	minor head protein	head and packaging
UniRef90	UHGV-0210105_15	UniRef90_A0A1C6H6B4	524.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0210105_15	1123263.AUKY01000068_gene489	379.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0210105_15	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0210105_15	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-0210105_15	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0210105_15	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0210105_15	PF14594,PF13884,TIGR01665,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-0210105_16	K19721	183.1	0	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0210105_16	phrog_819	145.1	0	tail protein	tail
eggNOG-mapper	UHGV-0210105_16	1519439.JPJG01000060_gene1892	82.0	0.000000000000423	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0210105_16	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0210105_16	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
Pfam	UHGV-0210105_18	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-0210105_20	PF14600,COG3979	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0210105_21	PF12988	N/A	N/A	N/A	N/A
KOfam	UHGV-0210105_22	K19303	55.0	0.0000000000000017	mepH; murein DD-endopeptidase [EC:3.4.-.-]	N/A
PHROG	UHGV-0210105_22	phrog_329	49.0	0.000000000000019	minor tail protein	tail
UniRef90	UHGV-0210105_22	UniRef90_A0A2V2EEK9	183.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0210105_22	755731.Clo1100_1179	92.0	1.75e-19	cysteine-type peptidase activity	N/A
Pfam	UHGV-0210105_22	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0210105_22	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0210105_22	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0210105_22	PF00877,PF01471,NF033743,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0210105_23	phrog_1863	51.5	0.000000000000011	N/A	unknown function
UniRef90	UHGV-0210105_23	UniRef90_A0A7X2Z1D1	94.7	2.1e-23	t-SNARE coiled-coil homology domain-containing protein	N/A
eggNOG-mapper	UHGV-0210105_23	1122918.KB907250_gene3599	93.6	1.01e-23	N/A	N/A
PHROG	UHGV-0210105_24	phrog_881	82.5	2.8e-24	holin	lysis
UniRef90	UHGV-0210105_24	UniRef90_A0A4Q7P349	103.0	9.1e-28	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-0210105_24	742740.HMPREF9474_02251	101.0	9.59e-28	Putative phage holin Dp-1	N/A
Pfam	UHGV-0210105_24	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0210105_24	PF16938	N/A	N/A	N/A	N/A
UniRef90	UHGV-0210105_25	UniRef90_A0A345MLR2	56.2	0.0000000541	Chromosome partitioning protein	N/A
Pfam	UHGV-0210105_27	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0210105_27	PF21291,TIGR02607,COG3093	N/A	N/A	N/A	N/A
KOfam	UHGV-0210105_28	K06400	273.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0210105_28	phrog_95	274.9	0	integrase	integration and excision
UniRef90	UHGV-0210105_28	UniRef90_A0A3A9ED02	323.0	0	Site-specific recombinase	N/A
eggNOG-mapper	UHGV-0210105_28	1235792.C808_00650	288.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0210105_28	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0210105_28	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0210105_28	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0210105_28	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0210105_29	1121924.ATWH01000011_gene257	84.3	2.23e-16	TM2 domain	N/A
COG	UHGV-0210105_29	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-0210105_30	K22300	40.5	0.000000000045	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0210105_30	phrog_8	50.0	0.00000000000007	transcriptional regulator	transcription regulation
UniRef90	UHGV-0210105_30	UniRef90_UPI000831CB3C	64.3	0.0000000000488	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0210105_30	742740.HMPREF9474_01673	58.5	0.00000000365	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0210105_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0210105_30	PF12844,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0210105_31	phrog_8	59.7	7.1e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0210105_31	UniRef90_A8U888	76.6	1.08e-16	Transcriptional regulator, Cro/CI family protein	N/A
eggNOG-mapper	UHGV-0210105_31	226185.EF_2040	74.7	1.24e-16	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0210105_31	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0210105_31	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0210105_31	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0210105_33	phrog_10993	63.6	2.7e-18	Hoc-like head decoration	head and packaging
Pfam	UHGV-0210105_33	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0210105_33	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-0210105_34	K07451	42.3	0.000000000012	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0210105_34	phrog_7370	62.8	4.7e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0210105_34	UniRef90_UPI00082FB90B	137.0	6.88e-40	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0210105_34	445972.ANACOL_01826	105.0	2.77e-28	HNH nucleases	N/A
Pfam	UHGV-0210105_34	PF01844	N/A	N/A	HNH endonuclease	HNH
Pfam	UHGV-0210105_36	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
PHROG	UHGV-0210105_37	phrog_10993	50.1	0.000000000000034	Hoc-like head decoration	head and packaging
Pfam	UHGV-0210105_37	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0210105_37	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0210105_38	phrog_24368	44.7	0.00000000000077	N/A	unknown function
PHROG	UHGV-0210105_39	phrog_428	93.4	3.7e-27	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0210105_39	UniRef90_UPI000BFEB725	67.4	0.000000000226	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0210105_39	642492.Clole_1831	85.1	1.02e-17	Helix-turn-helix domain	N/A
Pfam	UHGV-0210105_39	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0210105_39	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0210105_39	COG1846	N/A	N/A	DNA-binding transcriptional regulator, MarR family	N/A
structural_annotation	UHGV-0210105_39	PF09524,TIGR02220	N/A	N/A	N/A	N/A
PHROG	UHGV-0210105_41	phrog_3584	106.7	2.3e-31	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0210105_41	537013.CLOSTMETH_02141	88.6	6.17e-19	N/A	N/A
structural_annotation	UHGV-0210105_41	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-0210105_42	phrog_21498	287.7	0	N/A	unknown function
UniRef90	UHGV-0210105_42	UniRef90_A0A250ETS9	222.0	0	Chromosome partitioning protein ParB	N/A
eggNOG-mapper	UHGV-0210105_42	1095750.HMPREF9970_2290	237.0	0	chromosome segregation	N/A
COG	UHGV-0210105_42	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0210105_42	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-0210105_43	phrog_824	125.8	1.5e-37	N/A	unknown function
UniRef90	UHGV-0210105_43	UniRef90_UPI001C0C5C8A	126.0	4.93e-34	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0210105_43	411470.RUMGNA_02049	123.0	1.89e-33	VRR-NUC domain	N/A
Pfam	UHGV-0210105_47	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0210105_47	NF037951	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0210105	Yes	30,266	54	81	1
UHGV-1329283	No	14,325	57	42	1
UHGV-1711426	No	13,945	56	41	1
UHGV-1851954	No	13,239	55	39	1
UHGV-1802269	No	12,990	55	38	1
UHGV-1811422	No	12,990	55	38	1
UHGV-1812691	No	12,986	55	38	1
UHGV-0279923	No	12,874	56	38	1
UHGV-1592782	No	11,973	56	35	1
UHGV-1668565	No	11,068	55	32	1
UHGV-0090715	No	10,036	56	24	1