vOTU vOTU-016697

vOTU: vOTU-016697

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-016697
Number of genomes	10
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00089 → vGENUS-08391 → vOTU-016697
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D sp000434695
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1404460
Biosample ID	N/A
Genome length (bp)	28,684 bps
CheckV completeness	81.90% (Medium-quality)
CDS count	40
CDS density	95.76%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D sp000434695	Total connections	48	Host agreement	93.75
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D sp000434695	Total connections	25	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 81.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1404460_1	phrog_9479	183.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1404460_1	1514668.JOOA01000002_gene2680	58.9	0.0000000024	N/A	N/A
structural_annotation	UHGV-1404460_1	PF15529	N/A	N/A	N/A	N/A
PHROG	UHGV-1404460_2	phrog_8680	221.8	0	N/A	unknown function
UniRef90	UHGV-1404460_2	UniRef90_A0A373V619	305.0	0	N/A	N/A
eggNOG-mapper	UHGV-1404460_2	411470.RUMGNA_02208	241.0	0	N/A	N/A
Pfam	UHGV-1404460_2	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-1404460_2	PF14386	N/A	N/A	N/A	N/A
KOfam	UHGV-1404460_3	K07273	174.8	0	acm; lysozyme	N/A
PHROG	UHGV-1404460_3	phrog_291	166.3	0	endolysin	lysis
UniRef90	UHGV-1404460_3	UniRef90_UPI001D06C0C4	509.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-1404460_3	246199.CUS_5914	285.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1404460_3	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1404460_3	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1404460_3	PF01183,PF01471,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1404460_4	phrog_199	86.1	3.7e-25	holin	lysis
UniRef90	UHGV-1404460_4	UniRef90_R6CL31	265.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-1404460_4	887325.HMPREF0381_0407	187.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-1404460_4	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1404460_4	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1404460_4	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1404460_4	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
UniRef90	UHGV-1404460_6	UniRef90_UPI001D08D8A2	497.0	0	phage baseplate upper protein	N/A
Pfam	UHGV-1404460_6	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
PHROG	UHGV-1404460_7	phrog_3558	240.4	0	tail protein	tail
UniRef90	UHGV-1404460_7	UniRef90_UPI001D08FE3D	388.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1404460_7	945021.TEH_17980	148.0	1.73e-37	Prophage endopeptidase tail	N/A
Pfam	UHGV-1404460_7	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-1404460_7	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1404460_7	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
COG	UHGV-1404460_8	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1404460_8	PF19512,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1404460_9	phrog_6900	240.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1404460_9	1321372.AQQB01000060_gene72	294.0	0	phage tail tape measure protein	N/A
COG	UHGV-1404460_9	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1404460_9	PF16535	N/A	N/A	N/A	N/A
PHROG	UHGV-1404460_10	phrog_1633	120.5	8.3e-36	N/A	unknown function
UniRef90	UHGV-1404460_10	UniRef90_UPI001939D555	112.0	1.7e-29	N/A	N/A
eggNOG-mapper	UHGV-1404460_10	873448.STRPO_0293	100.0	1.35e-25	N/A	N/A
Pfam	UHGV-1404460_10	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-1404460_10	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-1404460_11	phrog_1526	76.8	2.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-1404460_11	665950.HMPREF1025_02524	65.1	0.00000000000119	N/A	N/A
PHROG	UHGV-1404460_12	phrog_117	167.9	0	major tail protein	tail
UniRef90	UHGV-1404460_12	UniRef90_R6CIW0	359.0	0	Major tail protein	N/A
eggNOG-mapper	UHGV-1404460_12	1121864.OMO_02158	219.0	0	domain, Protein	N/A
COG	UHGV-1404460_12	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1404460_12	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1404460_13	phrog_123	54.6	0.0000000000000019	tail terminator	connector
UniRef90	UHGV-1404460_13	UniRef90_R6D1D5	228.0	0	N/A	N/A
eggNOG-mapper	UHGV-1404460_13	1123263.AUKY01000068_gene495	113.0	5.23e-31	N/A	N/A
structural_annotation	UHGV-1404460_13	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1404460_14	phrog_387	42.3	0.000000000011	neck protein	connector
PHROG	UHGV-1404460_15	phrog_501	85.8	4e-25	head closure Hc1	connector
UniRef90	UHGV-1404460_15	UniRef90_R6CEU4	235.0	0	N/A	N/A
eggNOG-mapper	UHGV-1404460_15	1214184.ALKY01000039_gene915	131.0	5.02e-38	N/A	N/A
structural_annotation	UHGV-1404460_15	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1404460_16	phrog_137	58.1	1.3e-16	head-tail adaptor Ad1	connector
UniRef90	UHGV-1404460_16	UniRef90_R6C7E8	241.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-1404460_16	873448.STRPO_0287	89.7	4.56e-21	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-1404460_16	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-1404460_16	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1404460_17	phrog_32396	134.0	3.4e-40	N/A	unknown function
UniRef90	UHGV-1404460_17	UniRef90_A0A5R9MH02	491.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1404460_17	1321784.HMPREF1987_01073	333.0	0	Phage capsid family	N/A
Pfam	UHGV-1404460_17	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1404460_17	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1404460_17	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1404460_18	phrog_233	78.8	9.1e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-1404460_18	UniRef90_A0A373VN88	156.0	0	N/A	N/A
eggNOG-mapper	UHGV-1404460_18	706433.HMPREF9430_01266	103.0	2.94e-26	N/A	N/A
structural_annotation	UHGV-1404460_18	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1404460_19	phrog_17688	292.9	0	N/A	unknown function
UniRef90	UHGV-1404460_19	UniRef90_A0A374HI97	802.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1404460_19	665950.HMPREF1025_02532	506.0	0	phage terminase, large subunit	N/A
COG	UHGV-1404460_19	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1404460_19	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1404460_21	phrog_2494	192.6	0	minor head protein	head and packaging
UniRef90	UHGV-1404460_21	UniRef90_R6D1F4	518.0	0	Ntox50 domain-containing protein	N/A
eggNOG-mapper	UHGV-1404460_21	1280698.AUJS01000007_gene1034	144.0	9.77e-37	cell adhesion	N/A
COG	UHGV-1404460_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1404460_21	PF15542	N/A	N/A	N/A	N/A
PHROG	UHGV-1404460_22	phrog_104	263.0	0	portal protein	head and packaging
UniRef90	UHGV-1404460_22	UniRef90_A0A373VNC1	673.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1404460_22	1280698.AUJS01000007_gene1033	489.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-1404460_22	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1404460_23	phrog_338	104.7	9e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1404460_23	UniRef90_R6C7G0	238.0	0	Terminase ATPase subunit gpP-like protein	N/A
eggNOG-mapper	UHGV-1404460_23	936375.HMPREF1152_0672	173.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-1404460_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1404460_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1404460_24	phrog_36	47.5	0.00000000000035	transcriptional regulator	transcription regulation
UniRef90	UHGV-1404460_24	UniRef90_R6CIY5	202.0	0	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1404460_24	1304880.JAGB01000002_gene2225	52.0	0.00000159	N/A	N/A
structural_annotation	UHGV-1404460_24	PF07374	N/A	N/A	N/A	N/A
PHROG	UHGV-1404460_25	phrog_25754	81.4	5.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-1404460_25	1196322.A370_02055	80.9	2.92e-19	N/A	N/A
structural_annotation	UHGV-1404460_25	PF18195,MF_00257,NF041655,COG1923	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1404460_27	PF08141,MF_00667,TIGR02861,COG0231	N/A	N/A	N/A	N/A
KOfam	UHGV-1404460_28	K01160	52.1	0.000000000000017	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1404460_28	phrog_140	90.8	1.6e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1404460_28	UniRef90_UPI001D08BFE8	261.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1404460_28	411462.DORLON_00806	206.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1404460_28	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1404460_28	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1404460_28	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1404460_29	phrog_16687	93.7	9.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-1404460_29	1123511.KB905868_gene197	71.2	0.00000000000000368	N/A	N/A
KOfam	UHGV-1404460_30	K07505	396.0	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1404460_30	phrog_2597	1125.8	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1404460_30	UniRef90_UPI001D078284	1339.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1404460_30	394503.Ccel_3304	951.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1404460_30	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-1404460_30	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1404460_30	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1404460_30	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-1404460_31	K17677	343.0	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1404460_31	phrog_16	285.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1404460_31	UniRef90_UPI001D073100	1026.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-1404460_31	411462.DORLON_00809	789.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-1404460_31	mREase_IV_00005	119.3	3.7e-35	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1404460_31	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1404460_31	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1404460_31	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1404460_31	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1404460_32	phrog_2698	176.4	0	N/A	unknown function
UniRef90	UHGV-1404460_32	UniRef90_UPI001D0882DA	339.0	0	N/A	N/A
eggNOG-mapper	UHGV-1404460_32	742723.HMPREF9477_00927	146.0	2.43966e-42	N/A	N/A
structural_annotation	UHGV-1404460_32	PF17426,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-1404460_33	phrog_124	234.6	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1404460_33	UniRef90_UPI001D0734DA	610.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1404460_33	268407.PWYN_12340	377.0	0	AAA domain	N/A
Pfam	UHGV-1404460_33	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1404460_33	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-1404460_34	K03546	58.1	1.1e-16	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1404460_34	phrog_1499	458.8	0	N/A	unknown function
UniRef90	UHGV-1404460_34	UniRef90_UPI001D0905B9	693.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1404460_34	641112.ACOK01000073_gene2873	512.0	0	domain protein	N/A
Pfam	UHGV-1404460_34	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1404460_34	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1404460_34	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-1404460_38	phrog_757	175.3	0	DNA methyltransferase	other
UniRef90	UHGV-1404460_38	UniRef90_A0A417JTT5	271.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1404460_38	397290.C810_01487	202.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1404460_38	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1404460_38	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1404460_39	PF11372	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1404460	Yes	28,684	56	82	1
UHGV-1432367	No	31,094	53	90	1
UHGV-0086203	No	25,401	53	73	1
UHGV-1582840	No	17,028	56	49	1
UHGV-1593181	No	17,021	56	49	1
UHGV-2141345	No	15,868	56	46	1
UHGV-0049264	No	13,833	56	41	1
UHGV-1858292	No	13,833	56	41	1
UHGV-1627252	No	11,520	57	33	1
UHGV-0252282	No	11,110	56	32	1