vOTU vOTU-018472

vOTU: vOTU-018472

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-018472
Number of genomes	5
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-00261 → vGENUS-00170 → vOTU-018472
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0107768
Biosample ID	N/A
Genome length (bp)	29,967 bps
CheckV completeness	86.02% (Medium-quality)
CDS count	51
CDS density	95.76%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	235	Host agreement	96.6
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	214	Host agreement	92.52

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 86.02)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0107768_1	phrog_199	65.2	7.7e-19	holin	lysis
UniRef90	UHGV-0107768_1	UniRef90_R5AT18	270.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0107768_1	742738.HMPREF9460_01388	147.0	2.9147e-43	Bacteriophage holin family	N/A
Pfam	UHGV-0107768_1	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0107768_1	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0107768_1	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0107768_1	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0107768_2	K01447	66.7	4.9e-19	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0107768_2	phrog_5182	169.7	0	endolysin	lysis
UniRef90	UHGV-0107768_2	UniRef90_R5AZE6	434.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-0107768_2	397288.C806_00777	198.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0107768_2	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0107768_2	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-0107768_2	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0107768_2	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
Pfam	UHGV-0107768_3	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
structural_annotation	UHGV-0107768_3	PF18998,PF20328	N/A	N/A	N/A	N/A
UniRef90	UHGV-0107768_5	UniRef90_A0A7X4ZPD3	49.7	0.00000331	Histidine kinase	N/A
eggNOG-mapper	UHGV-0107768_5	742733.HMPREF9469_05009	58.5	0.00000000155	N/A	N/A
PHROG	UHGV-0107768_6	phrog_13589	206.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0107768_6	742733.HMPREF9469_05009	231.0	0	N/A	N/A
PHROG	UHGV-0107768_7	phrog_31538	58.5	1.4e-16	N/A	unknown function
PHROG	UHGV-0107768_8	phrog_15594	98.2	5e-29	N/A	unknown function
eggNOG-mapper	UHGV-0107768_8	1118055.CAGU01000013_gene763	57.8	0.00000000142	N/A	N/A
structural_annotation	UHGV-0107768_8	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_9	phrog_24267	108.1	8.8e-32	N/A	unknown function
eggNOG-mapper	UHGV-0107768_9	742742.HMPREF9452_00376	129.0	6.51e-36	tail collar domain protein	N/A
COG	UHGV-0107768_9	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0107768_9	COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_10	phrog_38190	56.7	2.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-0107768_10	762211.BSTEL_0610	71.6	0.00000000000302	N/A	N/A
PHROG	UHGV-0107768_11	phrog_6616	61.7	3e-19	tail protein	tail
structural_annotation	UHGV-0107768_11	PF13550,PF16466,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0107768_12	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_13	phrog_1535	125.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0107768_13	UniRef90_A0A810PX76	105.0	6.2e-20	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0107768_13	1449050.JNLE01000003_gene3881	134.0	8.28e-30	domain protein	N/A
COG	UHGV-0107768_13	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0107768_13	PF16789,TIGR02473	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_14	phrog_706	107.9	9.9e-32	N/A	unknown function
UniRef90	UHGV-0107768_14	UniRef90_UPI00164D7633	179.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0107768_14	693746.OBV_18170	171.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0107768_14	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0107768_14	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_15	phrog_11299	100.1	2.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-0107768_15	1449050.JNLE01000003_gene3883	65.1	0.000000000028	N/A	N/A
structural_annotation	UHGV-0107768_15	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_16	phrog_3099	87.5	1.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-0107768_16	693746.OBV_18150	223.0	0	N/A	N/A
structural_annotation	UHGV-0107768_16	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_17	phrog_3266	63.0	4.4e-18	tail completion	connector
eggNOG-mapper	UHGV-0107768_17	476272.RUMHYD_01781	117.0	2.18e-31	N/A	N/A
structural_annotation	UHGV-0107768_17	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_18	phrog_556	63.4	1.2e-18	minor head protein	head and packaging
UniRef90	UHGV-0107768_18	UniRef90_A0A1H7MNM8	116.0	2.3e-30	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0107768_18	476272.RUMHYD_01780	113.0	3.41e-30	N/A	N/A
Pfam	UHGV-0107768_18	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0107768_18	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_19	phrog_3366	49.6	0.000000000000076	N/A	unknown function
structural_annotation	UHGV-0107768_19	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_20	phrog_541	70.1	3.1e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0107768_20	476272.RUMHYD_01778	73.6	0.0000000000000219	N/A	N/A
PHROG	UHGV-0107768_21	phrog_267	55.1	0.0000000000000012	major head protein	head and packaging
eggNOG-mapper	UHGV-0107768_21	33035.JPJF01000030_gene2294	175.0	0	N/A	N/A
structural_annotation	UHGV-0107768_21	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_22	phrog_194	43.2	0.0000000000073	head scaffolding protein	head and packaging
UniRef90	UHGV-0107768_22	UniRef90_UPI001C0EBA51	127.0	2.4e-33	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0107768_22	1539298.JO41_08210	61.6	0.00000000338	Phage minor structural protein GP20	N/A
Pfam	UHGV-0107768_22	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0107768_22	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_23	phrog_581	252.3	0	minor head protein	head and packaging
UniRef90	UHGV-0107768_23	UniRef90_A0A355KVT5	351.0	0	Phage capsid protein (Fragment)	N/A
eggNOG-mapper	UHGV-0107768_23	476272.RUMHYD_01761	223.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0107768_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0107768_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0107768_23	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_24	phrog_533	209.7	0	portal protein	head and packaging
UniRef90	UHGV-0107768_24	UniRef90_A0A173TY48	343.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0107768_24	33035.JPJF01000106_gene3135	328.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0107768_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_25	phrog_1233	95.2	7.7e-28	N/A	unknown function
eggNOG-mapper	UHGV-0107768_25	1415774.U728_832	93.2	3.72e-23	N/A	N/A
structural_annotation	UHGV-0107768_25	PF13058	N/A	N/A	N/A	N/A
KOfam	UHGV-0107768_26	K06909	394.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0107768_26	phrog_5653	145.4	2.70451e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0107768_26	UniRef90_A0A416S378	639.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0107768_26	33035.JPJF01000106_gene3136	600.0	0	Terminase small subunit	N/A
Pfam	UHGV-0107768_26	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0107768_26	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0107768_26	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0107768_26	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0107768_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0107768_26	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0107768_27	PF10922,MF_00839	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_29	phrog_36	57.6	2.8e-16	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0107768_29	428125.CLOLEP_01806	104.0	1.81e-26	N/A	N/A
Pfam	UHGV-0107768_29	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0107768_29	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_31	phrog_2245	101.1	1e-29	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0107768_31	UniRef90_A0A4U9RLZ8	85.5	7.52e-20	N/A	N/A
eggNOG-mapper	UHGV-0107768_31	293826.Amet_2596	94.0	3.7e-23	N/A	N/A
structural_annotation	UHGV-0107768_31	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_32	phrog_5781	71.7	1.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0107768_32	573061.Clocel_3558	79.7	5.72e-17	N/A	N/A
Pfam	UHGV-0107768_32	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0107768_32	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0107768_32	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_33	phrog_1029	222.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0107768_33	1203606.HMPREF1526_01890	368.0	0	N/A	N/A
structural_annotation	UHGV-0107768_33	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_34	phrog_997	41.2	0.000000000035	replication terminator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0107768_34	1519439.JPJG01000059_gene1910	86.7	3.48e-21	N/A	N/A
PHROG	UHGV-0107768_35	phrog_997	66.4	5.7e-19	replication terminator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0107768_35	1519439.JPJG01000059_gene1910	90.5	7.89e-23	N/A	N/A
KOfam	UHGV-0107768_36	K00558	220.5	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0107768_36	phrog_116	257.4	0	DNA methyltransferase	other
UniRef90	UHGV-0107768_36	UniRef90_A0A350THX9	730.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0107768_36	1121334.KB911073_gene1852	612.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0107768_36	MTase_II_00020	94.4	2.7e-30	Type II methyltransferase	RM
Pfam	UHGV-0107768_36	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0107768_36	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0107768_36	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0107768_37	1232449.BAHV02000016_gene1829	136.0	2.41e-39	N/A	N/A
KOfam	UHGV-0107768_38	K03700	87.9	1.5e-25	recU; recombination protein U	N/A
PHROG	UHGV-0107768_38	phrog_843	135.9	1.50001e-40	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0107768_38	UniRef90_A0A1H0W5Y9	163.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0107768_38	1203606.HMPREF1526_01884	149.0	2.86005e-42	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-0107768_38	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-0107768_38	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-0107768_38	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_39	phrog_3584	132.6	3.1e-39	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0107768_39	411470.RUMGNA_02047	135.0	1.58e-35	N/A	N/A
structural_annotation	UHGV-0107768_39	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0107768_42	K06284	120.6	9.1e-36	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	N/A
PHROG	UHGV-0107768_42	phrog_4681	104.9	3e-31	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0107768_42	UniRef90_A0A841SSA0	111.0	3.27e-30	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0107768_42	1120998.AUFC01000033_gene2303	107.0	1.68e-29	TIGRFAM looped-hinge helix DNA binding domain, AbrB family	N/A
Pfam	UHGV-0107768_42	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-0107768_42	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
COG	UHGV-0107768_42	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-0107768_42	PF15937,TIGR01439,NF004424,COG2002	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_44	phrog_585	42.7	0.000000000011	N/A	unknown function
Pfam	UHGV-0107768_44	PF10711	N/A	N/A	N/A	DUF2513
PHROG	UHGV-0107768_45	phrog_750	43.0	0.0000000000046	N/A	unknown function
structural_annotation	UHGV-0107768_45	PF13835,NF040858	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_47	phrog_3240	75.8	5.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-0107768_47	320841.Q4ZC34_9CAUD	55.1	0.00000000813	N/A	N/A
KOfam	UHGV-0107768_49	K07729	40.8	0.000000000048	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0107768_49	UniRef90_UPI0013ECC13D	63.5	0.00000000000758	helix-turn-helix domain-containing protein	N/A
PADLOC	UHGV-0107768_49	retron_type_VI_hth_cluster2_1	41.1	0.000000000054	N/A	Retron
Pfam	UHGV-0107768_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0107768_49	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0107768_49	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0107768_50	K22300	60.9	3e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0107768_50	phrog_8	49.9	0.00000000000007	transcriptional regulator	transcription regulation
UniRef90	UHGV-0107768_50	UniRef90_UPI000E31F980	90.5	4.68e-21	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0107768_50	1125712.HMPREF1316_2394	63.5	0.000000000145	Peptidase S24-like	N/A
PADLOC	UHGV-0107768_50	retron_type_VI_hth_cluster2_1	40.2	0.000000000084	N/A	Retron
Pfam	UHGV-0107768_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0107768_50	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0107768_50	PF13560,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0107768_51	phrog_1914	91.9	7.7e-27	N/A	unknown function
UniRef90	UHGV-0107768_51	UniRef90_R6DVV5	192.0	0	Predicted Zn peptidase	N/A
eggNOG-mapper	UHGV-0107768_51	1160721.RBI_I01604	114.0	4.82e-30	N/A	N/A
Pfam	UHGV-0107768_51	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0107768_51	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0107768	Yes	29,967	57	86	1
UHGV-0190791	No	30,446	56	87	1
UHGV-0264356	No	30,042	56	86	1
UHGV-0290211	No	26,674	55	77	1
UHGV-0071919	No	16,863	57	48	1