vOTU vOTU-018579

vOTU: vOTU-018579

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-018579
Number of genomes	5
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp905215855
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00111 → vOTU-018579
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1479973
Biosample ID	N/A
Genome length (bp)	29,928 bps
CheckV completeness	85.06% (Medium-quality)
CDS count	40
CDS density	90.67%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1467	Host agreement	84.05
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp905215855	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 85.06)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1479973_1	K14059	107.8	1.5e-31	int; integrase	N/A
PHROG	UHGV-1479973_1	phrog_1	127.3	1.5e-37	integrase	integration and excision
UniRef90	UHGV-1479973_1	UniRef90_A0A1G5CL52	750.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-1479973_1	693746.OBV_41260	198.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1479973_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1479973_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1479973_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1479973_3	phrog_1914	146.7	1.30321e-43	N/A	unknown function
UniRef90	UHGV-1479973_3	UniRef90_UPI000E543E50	349.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1479973_3	1160721.RBI_I01604	177.0	0	N/A	N/A
Pfam	UHGV-1479973_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1479973_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1479973_3	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1479973_4	phrog_8	46.5	0.00000000000072	transcriptional regulator	transcription regulation
UniRef90	UHGV-1479973_4	UniRef90_UPI0015F3DE1D	282.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1479973_4	663278.Ethha_2423	73.2	0.0000000000000185	sequence-specific DNA binding	N/A
Pfam	UHGV-1479973_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1479973_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1479973_4	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1479973_5	UniRef90_UPI000E51362F	130.0	1.26e-38	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1479973_5	411461.DORFOR_00030	51.2	0.0000000865	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1479973_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1479973_5	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1479973_7	phrog_585	114.5	6.7e-34	N/A	unknown function
UniRef90	UHGV-1479973_7	UniRef90_UPI00051C896C	142.0	1.88993e-41	N/A	N/A
eggNOG-mapper	UHGV-1479973_7	1033744.CAEL01000029_gene1306	128.0	6.65e-36	N/A	N/A
Pfam	UHGV-1479973_7	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-1479973_7	PF10711,MF_01819,TIGR03433,COG3432	N/A	N/A	N/A	N/A
PHROG	UHGV-1479973_9	phrog_8684	97.0	8.9e-29	N/A	unknown function
UniRef90	UHGV-1479973_9	UniRef90_UPI000E48855B	140.0	2.1e-40	YopX family protein	N/A
eggNOG-mapper	UHGV-1479973_9	1235799.C818_02660	78.2	9.61e-17	YopX protein	N/A
Pfam	UHGV-1479973_9	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1479973_9	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1479973_9	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1479973_10	phrog_6058	41.6	0.000000000013	N/A	unknown function
structural_annotation	UHGV-1479973_10	NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-1479973_12	K03497	157.1	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1479973_12	phrog_6218	240.3	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1479973_12	UniRef90_A0A3D3D7T1	752.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1479973_12	394503.Ccel_3306	240.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-1479973_12	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-1479973_12	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-1479973_12	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-1479973_12	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-1479973_13	phrog_5696	217.1	0	N/A	unknown function
UniRef90	UHGV-1479973_13	UniRef90_UPI001B3C9C54	256.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-1479973_13	397291.C804_06560	150.0	5.4006e-42	N-6 DNA Methylase	N/A
Pfam	UHGV-1479973_13	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-1479973_13	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-1479973_13	COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-1479973_14	phrog_323	79.4	1e-23	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1479973_14	UniRef90_UPI001C01CFF8	306.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-1479973_14	394503.Ccel_3305	345.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
dbAPIS	UHGV-1479973_14	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-1479973_14	PF11112,NF040595	N/A	N/A	N/A	N/A
KOfam	UHGV-1479973_15	K04763	211.6	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1479973_15	phrog_1	173.3	0	integrase	integration and excision
UniRef90	UHGV-1479973_15	UniRef90_UPI001B3C6404	369.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1479973_15	397291.C804_01139	232.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1479973_15	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1479973_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1479973_15	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1479973_15	PF00589,PF13495,MF_01808,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-1479973_16	phrog_24518	74.2	1.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-1479973_16	1519439.JPJG01000077_gene922	106.0	6.59e-26	N/A	N/A
PHROG	UHGV-1479973_17	phrog_824	148.6	1.82169e-44	N/A	unknown function
UniRef90	UHGV-1479973_17	UniRef90_A0A3D3D6C6	243.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1479973_17	397288.C806_00096	159.0	0	VRR_NUC	N/A
Pfam	UHGV-1479973_17	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1479973_17	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-1479973_19	phrog_2118	118.1	7.9e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1479973_19	UniRef90_A0A374DVG7	251.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1479973_19	610130.Closa_0730	149.0	5.60519e-45	HNH endonuclease	N/A
Pfam	UHGV-1479973_19	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1479973_19	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1479973_19	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1479973_20	phrog_8684	83.4	2.7e-25	N/A	unknown function
UniRef90	UHGV-1479973_20	UniRef90_A0A374DV44	254.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1479973_20	563031.HMPREF0666_01127	74.7	0.00000000000000192	YopX protein	N/A
Pfam	UHGV-1479973_20	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1479973_20	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1479973_20	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1479973_23	phrog_3584	145.3	3.69943e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1479973_23	1235800.C819_00515	72.0	0.00000000000374	N/A	N/A
structural_annotation	UHGV-1479973_23	PF21578,NF041486	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1479973_24	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1479973_25	phrog_119	72.3	6.8e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1479973_25	UniRef90_A0A412ULY9	226.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1479973_25	1158607.UAU_01026	103.0	3.57e-27	HNH endonuclease	N/A
Pfam	UHGV-1479973_25	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1479973_25	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1479973_26	phrog_5110	83.8	1.4e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1479973_26	UniRef90_A0A4U7JDP0	114.0	8.67e-31	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1479973_26	1211817.CCAT010000053_gene2128	100.0	4.45e-26	N/A	N/A
Pfam	UHGV-1479973_26	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1479973_26	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1479973_27	phrog_9	290.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1479973_27	UniRef90_A0A412UM03	1047.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1479973_27	86416.Clopa_0337	618.0	0	Phage Terminase	N/A
Pfam	UHGV-1479973_27	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1479973_27	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1479973_27	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1479973_27	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1479973_28	phrog_12	100.0	2e-29	portal protein	head and packaging
UniRef90	UHGV-1479973_28	UniRef90_A0A412ULV9	751.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1479973_28	1415774.U728_1254	263.0	0	Phage portal protein	N/A
Pfam	UHGV-1479973_28	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1479973_28	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1479973_28	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1479973_28	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1479973_29	K01358	143.4	2.10055e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1479973_29	phrog_94	213.3	0	head maturation protease	head and packaging
UniRef90	UHGV-1479973_29	UniRef90_A0A412ULU1	426.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1479973_29	86416.Clopa_0340	172.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1479973_29	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1479973_29	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1479973_29	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1479973_30	phrog_10	121.3	9.7e-36	major head protein	head and packaging
UniRef90	UHGV-1479973_30	UniRef90_A0A412ULW9	693.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1479973_30	1211817.CCAT010000053_gene2132	326.0	0	Phage capsid family	N/A
Pfam	UHGV-1479973_30	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1479973_30	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1479973_30	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1479973_30	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1479973_31	phrog_749	56.1	5.7e-16	N/A	unknown function
UniRef90	UHGV-1479973_31	UniRef90_A0A1G5CMX8	107.0	2.14e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1479973_31	1211817.CCAT010000053_gene2133	60.1	0.000000000207	N/A	N/A
PHROG	UHGV-1479973_32	phrog_19734	72.0	7.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-1479973_32	86416.Clopa_0343	62.4	0.0000000000566	N/A	N/A
structural_annotation	UHGV-1479973_32	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1479973_33	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-1479973_34	UniRef90_UPI000E5564A4	273.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-1479973_34	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1479973_34	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1479973_35	phrog_88	76.2	4.5e-22	major tail protein	tail
UniRef90	UHGV-1479973_35	UniRef90_A0A1G5CNS8	151.0	1.31021e-42	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1479973_35	1321782.HMPREF1986_01362	63.5	0.000000000968	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1479973_35	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1479973_35	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1479973_36	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-1479973_37	K20478	66.7	4.3e-20	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-1479973_37	phrog_5218	304.2	0	N/A	unknown function
UniRef90	UHGV-1479973_37	UniRef90_A0A412ULX0	1595.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1479973_37	588581.Cpap_1264	243.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1479973_37	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1479973_37	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1479973_37	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1479973_38	phrog_33	82.6	7.9e-24	distal tail protein Dit	tail
UniRef90	UHGV-1479973_38	UniRef90_A0A1G5CPA2	117.0	5.1e-28	Phage-related protein	N/A
eggNOG-mapper	UHGV-1479973_38	1160721.RBI_I01575	72.0	0.00000000000403	Phage tail protein	N/A
COG	UHGV-1479973_38	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1479973_38	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1479973_39	phrog_1067	119.4	3.4e-35	minor head protein	head and packaging
UniRef90	UHGV-1479973_39	UniRef90_A0A1G5CPD2	129.0	4.62e-30	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-1479973_39	1567011.A0A0A7RUI9_9VIRU	56.6	0.00000812	N-acetylmuramoyl-L-alanine amidase activity	N/A
structural_annotation	UHGV-1479973_39	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1479973_40	PF10651,NF032891,COG5513	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1479973	Yes	29,928	40	85	1
UHGV-0129825	No	17,968	41	51	1
UHGV-0201597	No	17,851	41	51	1
UHGV-1441926	No	17,689	41	50	1
UHGV-0125183	No	12,142	38	35	1