vOTU vOTU-018903

vOTU: vOTU-018903

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-018903
Number of genomes	7
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-01113 → vGENUS-12822 → vOTU-018903
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1540710
Biosample ID	SAMEA3665082
Genome length (bp)	37,530 bps
CheckV completeness	83.85% (Medium-quality)
CDS count	53
CDS density	92.68%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705	Total connections	152	Host agreement	83.55
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705	Total connections	124	Host agreement	94.35

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 83.85)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1540710_1	K14059	182.0	0	int; integrase	N/A
PHROG	UHGV-1540710_1	phrog_1	169.2	0	integrase	integration and excision
UniRef90	UHGV-1540710_1	UniRef90_UPI001B3C717A	701.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1540710_1	861454.HMPREF9099_00328	227.0	0	Phage integrase family	N/A
Pfam	UHGV-1540710_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1540710_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1540710_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1540710_1	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_2	phrog_1914	131.7	5.2e-39	N/A	unknown function
UniRef90	UHGV-1540710_2	UniRef90_UPI001D082E60	202.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1540710_2	1160721.RBI_I01604	193.0	0	N/A	N/A
Pfam	UHGV-1540710_2	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1540710_2	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1540710_2	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1540710_3	K22300	63.0	5.8e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1540710_3	phrog_8	73.9	3.3e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-1540710_3	UniRef90_A0A136WE02	121.0	4.63e-32	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-1540710_3	1385512.N784_13395	99.8	9.01e-24	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1540710_3	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1540710_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1540710_3	PF13560,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1540710_4	UniRef90_A0A373XYJ8	118.0	3.3e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1540710_4	1121423.JONT01000002_gene2373	79.0	5.98e-18	N/A	N/A
PHROG	UHGV-1540710_5	phrog_750	81.2	9.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-1540710_5	742723.HMPREF9477_00931	100.0	2.21e-26	N/A	N/A
structural_annotation	UHGV-1540710_5	PF13835,NF040858	N/A	N/A	N/A	N/A
UniRef90	UHGV-1540710_9	UniRef90_UPI001B3C932B	162.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1540710_9	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1540710_9	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_13	phrog_408	52.3	0.00000000000001	N/A	unknown function
PHROG	UHGV-1540710_14	phrog_69	344.4	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540710_14	UniRef90_A0A348Z940	774.0	0	N/A	N/A
eggNOG-mapper	UHGV-1540710_14	1296660.S5MUB5_9CAUD	375.0	0	N/A	N/A
Pfam	UHGV-1540710_14	PF10926	N/A	N/A	N/A	DUF2800
structural_annotation	UHGV-1540710_14	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_15	phrog_112	222.1	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540710_15	UniRef90_A0A348Z939	363.0	0	N/A	N/A
eggNOG-mapper	UHGV-1540710_15	1540257.JQMW01000004_gene440	235.0	0	N/A	N/A
Pfam	UHGV-1540710_15	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-1540710_15	PF10991,MF_04153	N/A	N/A	N/A	N/A
KOfam	UHGV-1540710_16	K02334	890.7	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-1540710_16	phrog_17	425.2	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540710_16	UniRef90_A0A348Z938	1291.0	0	POLAc domain-containing protein	N/A
eggNOG-mapper	UHGV-1540710_16	1121342.AUCO01000004_gene620	740.0	0	DNA polymerase	N/A
Pfam	UHGV-1540710_16	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-1540710_16	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-1540710_16	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_17	phrog_256	1086.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540710_17	UniRef90_UPI001D06E26F	883.0	0	virulence-associated E family protein	N/A
eggNOG-mapper	UHGV-1540710_17	1567012.A0A0A7RTG3_9VIRU	836.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-1540710_17	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
structural_annotation	UHGV-1540710_17	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_18	phrog_93	86.8	2.8e-25	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540710_18	UniRef90_A0A348Z936	176.0	0	Nuclease	N/A
eggNOG-mapper	UHGV-1540710_18	1118055.CAGU01000013_gene794	108.0	1.73e-29	VRR_NUC	N/A
KOfam	UHGV-1540710_19	K14440	81.9	4.2e-38	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-1540710_19	phrog_62	410.5	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540710_19	UniRef90_A0A348Z935	889.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-1540710_19	97138.C820_00220	629.0	0	snf2 family	N/A
PADLOC	UHGV-1540710_19	ZorD1_00007	85.3	2.2e-25	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-1540710_19	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1540710_19	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1540710_19	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1540710_19	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1540710_20	PF09889	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_25	phrog_36	82.8	4.2e-24	transcriptional regulator	transcription regulation
UniRef90	UHGV-1540710_25	UniRef90_A0A6B3W4B2	92.8	3.91e-21	N/A	N/A
eggNOG-mapper	UHGV-1540710_25	1408303.JNJJ01000084_gene2550	92.0	1.38e-21	N/A	N/A
Pfam	UHGV-1540710_25	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1540710_25	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1540710_25	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_26	phrog_8680	246.0	0	N/A	unknown function
UniRef90	UHGV-1540710_26	UniRef90_A0A373KTP5	287.0	0	N/A	N/A
eggNOG-mapper	UHGV-1540710_26	411470.RUMGNA_02208	232.0	0	N/A	N/A
Pfam	UHGV-1540710_26	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-1540710_26	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_28	phrog_309	140.2	5.29971e-42	terminase small subunit	head and packaging
UniRef90	UHGV-1540710_28	UniRef90_UPI001B3C9B19	266.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1540710_28	693746.OBV_18020	139.0	3.75e-40	transposase activity	N/A
COG	UHGV-1540710_28	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1540710_28	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-1540710_29	K06909	81.8	9.1e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1540710_29	phrog_2	80.8	2.7e-23	terminase large subunit	head and packaging
UniRef90	UHGV-1540710_29	UniRef90_UPI001B3C8BA8	853.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1540710_29	1304866.K413DRAFT_3034	599.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1540710_29	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1540710_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1540710_29	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_30	phrog_533	299.5	0	portal protein	head and packaging
UniRef90	UHGV-1540710_30	UniRef90_UPI001B3C997D	870.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-1540710_30	1304866.K413DRAFT_3035	448.0	0	N/A	N/A
structural_annotation	UHGV-1540710_30	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_31	phrog_581	318.2	0	minor head protein	head and packaging
UniRef90	UHGV-1540710_31	UniRef90_UPI001B3C97A7	1088.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1540710_31	1449050.JNLE01000003_gene3892	375.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1540710_31	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1540710_31	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1540710_31	PF06152,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_33	phrog_3675	108.3	3.2e-32	N/A	unknown function
UniRef90	UHGV-1540710_33	UniRef90_UPI001C02868E	131.0	1.39e-37	YjcQ family protein	N/A
eggNOG-mapper	UHGV-1540710_33	1235799.C818_04221	130.0	4.44e-38	YjcQ protein	N/A
Pfam	UHGV-1540710_33	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-1540710_33	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_34	phrog_194	105.0	8.5e-31	head scaffolding protein	head and packaging
UniRef90	UHGV-1540710_34	UniRef90_UPI001B3C6D0D	335.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1540710_34	999413.HMPREF1094_00216	132.0	7.88e-37	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1540710_34	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1540710_34	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_35	phrog_422	236.6	0	major head protein	head and packaging
eggNOG-mapper	UHGV-1540710_35	693746.OBV_18090	345.0	0	N/A	N/A
structural_annotation	UHGV-1540710_35	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_36	phrog_541	92.8	3e-27	head-tail adaptor	connector
UniRef90	UHGV-1540710_36	UniRef90_A0A371AQT0	99.8	1.03e-24	N/A	N/A
eggNOG-mapper	UHGV-1540710_36	1449050.JNLE01000003_gene3888	104.0	1.75e-27	N/A	N/A
PHROG	UHGV-1540710_37	phrog_3366	44.6	0.00000000000087	N/A	unknown function
eggNOG-mapper	UHGV-1540710_37	1449050.JNLE01000003_gene3887	64.3	0.00000000000801	N/A	N/A
PHROG	UHGV-1540710_38	phrog_556	119.7	1.1e-35	minor head protein	head and packaging
UniRef90	UHGV-1540710_38	UniRef90_UPI001B3C5A2B	322.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1540710_38	1449050.JNLE01000003_gene3886	138.0	8e-40	N/A	N/A
Pfam	UHGV-1540710_38	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1540710_38	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_39	phrog_3266	99.4	2.6e-29	tail completion	connector
eggNOG-mapper	UHGV-1540710_39	1449050.JNLE01000003_gene3885	149.0	2.8026e-44	N/A	N/A
structural_annotation	UHGV-1540710_39	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_40	phrog_3099	117.0	1.3e-34	N/A	unknown function
eggNOG-mapper	UHGV-1540710_40	1160721.RBI_II00532	191.0	0	N/A	N/A
structural_annotation	UHGV-1540710_40	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_41	phrog_11299	112.2	4.1e-33	N/A	unknown function
eggNOG-mapper	UHGV-1540710_41	1449050.JNLE01000003_gene3883	98.6	2.08e-24	N/A	N/A
structural_annotation	UHGV-1540710_41	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_42	phrog_706	143.1	1.60028e-42	N/A	unknown function
UniRef90	UHGV-1540710_42	UniRef90_UPI001B3C82AE	357.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1540710_42	1160721.RBI_II00530	201.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1540710_42	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1540710_42	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_43	phrog_5319	70.3	2e-20	outer membrane protein	other
UniRef90	UHGV-1540710_43	UniRef90_A0A1Q6JN93	140.0	3.38e-38	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1540710_43	1042156.CXIVA_15870	100.0	1.9e-22	sh3 domain protein	N/A
COG	UHGV-1540710_43	COG3103	N/A	N/A	N/A	N/A
UniRef90	UHGV-1540710_44	UniRef90_A0A358PKZ1	67.0	0.000000000000131	CopG family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1540710_44	445971.ANASTE_00725	62.4	0.00000000000179	N/A	N/A
structural_annotation	UHGV-1540710_44	PF12651,NF041793,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-1540710_46	K07741	93.7	5e-27	antB; anti-repressor protein	N/A
PHROG	UHGV-1540710_46	phrog_130	247.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1540710_46	UniRef90_UPI00085BF623	342.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-1540710_46	1289596.M1PKL6_9CAUD	324.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1540710_46	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1540710_46	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-1540710_46	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_47	phrog_1535	175.7	0	tail length tape measure protein	tail
UniRef90	UHGV-1540710_47	UniRef90_A0A2N0UYY1	510.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1540710_47	1235790.C805_00087	325.0	0	tape measure	N/A
COG	UHGV-1540710_47	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1540710_47	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_48	phrog_1194	41.5	0.000000000019	N/A	unknown function
eggNOG-mapper	UHGV-1540710_48	1235790.C805_00088	85.9	2.1e-19	N/A	N/A
Pfam	UHGV-1540710_48	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1540710_48	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_49	phrog_18190	42.8	5.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-1540710_49	742733.HMPREF9469_01807	66.6	0.00000000819	N/A	N/A
structural_annotation	UHGV-1540710_49	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_52	phrog_918	109.2	1.6e-32	N/A	unknown function
UniRef90	UHGV-1540710_52	UniRef90_UPI001F22DD3C	125.0	9.36e-36	N/A	N/A
eggNOG-mapper	UHGV-1540710_52	298338.Q5ULN6_9CAUD	117.0	3.35e-33	N/A	N/A
Pfam	UHGV-1540710_52	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1540710_52	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-1540710_53	phrog_199	89.8	2.9e-26	holin	lysis
UniRef90	UHGV-1540710_53	UniRef90_A0A348ZBJ4	278.0	0	Holin	N/A
eggNOG-mapper	UHGV-1540710_53	411459.RUMOBE_01714	207.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1540710_53	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1540710_53	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1540710_53	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1540710_53	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1540710	Yes	37,530	35	84	1
UHGV-0001285	No	39,882	35	90	1
UHGV-0023202	No	36,429	35	82	1
UHGV-0030856	No	34,797	35	78	1
UHGV-0033650	No	34,246	35	77	1
UHGV-0025961	No	34,038	35	77	1
UHGV-0005434	No	29,376	35	65	1