vOTU vOTU-018956

vOTU: vOTU-018956

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-018956
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00316 → vOTU-018956
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae
Host range breadth	Family
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1353429
Biosample ID	SAMN07646487
Genome length (bp)	33,107 bps
CheckV completeness	85.88% (Medium-quality)
CDS count	47
CDS density	92.98%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae	Total connections	151	Host agreement	91.39
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	145	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 85.88)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1353429_1	phrog_1194	51.7	0.000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-1353429_1	411471.SUBVAR_06933	113.0	7.6e-31	N/A	N/A
structural_annotation	UHGV-1353429_1	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-1353429_2	phrog_1535	140.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1353429_2	665956.HMPREF1032_03628	247.0	0	domain protein	N/A
COG	UHGV-1353429_2	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1353429_3	phrog_8355	65.9	3.5e-19	N/A	unknown function
UniRef90	UHGV-1353429_3	UniRef90_UPI0018A7EA5D	115.0	1.42e-30	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1353429_3	1507.HMPREF0262_01186	100.0	1.32e-25	N/A	N/A
structural_annotation	UHGV-1353429_3	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1353429_4	phrog_8300	82.4	4.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-1353429_4	1507.HMPREF0262_00213	96.7	1.26e-24	N/A	N/A
structural_annotation	UHGV-1353429_4	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-1353429_5	phrog_820	130.6	6.9e-39	major tail protein	tail
eggNOG-mapper	UHGV-1353429_5	1507.HMPREF0262_01184	204.0	0	domain, Protein	N/A
COG	UHGV-1353429_5	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1353429_5	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1353429_6	phrog_2595	52.7	0.0000000000000069	head-tail connector protein	connector
eggNOG-mapper	UHGV-1353429_6	1507.HMPREF0262_01183	85.5	1.5e-19	N/A	N/A
structural_annotation	UHGV-1353429_6	PF12691,COG5003	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1353429_7	742740.HMPREF9474_03509	96.7	4.13e-24	N/A	N/A
PHROG	UHGV-1353429_8	phrog_8710	105.4	3.4e-31	N/A	unknown function
eggNOG-mapper	UHGV-1353429_8	1507.HMPREF0262_01181	108.0	3.29e-29	N/A	N/A
structural_annotation	UHGV-1353429_8	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1353429_9	phrog_541	59.1	7.7e-17	head-tail adaptor	connector
eggNOG-mapper	UHGV-1353429_9	1294142.CINTURNW_1031	91.3	3.69e-22	N/A	N/A
PHROG	UHGV-1353429_10	phrog_422	69.6	5.3e-20	major head protein	head and packaging
UniRef90	UHGV-1353429_10	UniRef90_R7DBW4	128.0	4.72e-35	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1353429_10	663278.Ethha_1589	138.0	1.28e-38	N/A	N/A
PHROG	UHGV-1353429_11	phrog_422	187.4	0	major head protein	head and packaging
UniRef90	UHGV-1353429_11	UniRef90_A0A1Y4R5U9	277.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1353429_11	445972.ANACOL_01845	237.0	0	N/A	N/A
PHROG	UHGV-1353429_13	phrog_581	246.3	0	minor head protein	head and packaging
UniRef90	UHGV-1353429_13	UniRef90_UPI000A270255	354.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-1353429_13	1507.HMPREF0262_01176	291.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1353429_13	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-1353429_13	PF18810	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
COG	UHGV-1353429_13	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1353429_13	PF06152,PF01129,NF041404	N/A	N/A	N/A	N/A
PHROG	UHGV-1353429_14	phrog_533	212.0	0	portal protein	head and packaging
UniRef90	UHGV-1353429_14	UniRef90_UPI001875FE3B	644.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-1353429_14	1507.HMPREF0262_01175	473.0	0	N/A	N/A
structural_annotation	UHGV-1353429_14	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1353429_15	K06909	75.0	1e-21	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1353429_15	phrog_2	63.0	6.6e-18	terminase large subunit	head and packaging
UniRef90	UHGV-1353429_15	UniRef90_A0A372V3S5	644.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1353429_15	645991.Sgly_0335	568.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-1353429_15	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1353429_15	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1353429_16	K07474	122.5	5.9e-36	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1353429_16	phrog_51	116.2	2.3e-34	terminase small subunit	head and packaging
UniRef90	UHGV-1353429_16	UniRef90_A0A895HF95	135.0	2.01e-37	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1353429_16	1196028.ALEF01000043_gene470	133.0	1.52e-37	Terminase small subunit	N/A
Pfam	UHGV-1353429_16	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1353429_16	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1353429_16	PF03592,COG3728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1353429_17	930166.CD58_16850	71.6	0.000000000171	N/A	N/A
eggNOG-mapper	UHGV-1353429_19	693746.OBV_25230	133.0	2.19e-38	N/A	N/A
structural_annotation	UHGV-1353429_19	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1353429_25	phrog_824	136.0	1.3e-40	N/A	unknown function
UniRef90	UHGV-1353429_25	UniRef90_R7GUQ9	150.0	1.82169e-44	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1353429_25	742738.HMPREF9460_02501	132.0	2.38e-38	VRR_NUC	N/A
Pfam	UHGV-1353429_25	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1353429_25	PF08774	N/A	N/A	N/A	N/A
KOfam	UHGV-1353429_26	K17677	410.8	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1353429_26	phrog_16	242.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1353429_26	UniRef90_UPI001C63D655	719.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-1353429_26	742738.HMPREF9460_02499	641.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-1353429_26	mREase_IV_00005	122.1	3.7e-36	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1353429_26	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1353429_26	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1353429_26	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1353429_26	PF04851,PF16203,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1353429_27	phrog_8841	445.4	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1353429_27	UniRef90_UPI000C77A760	570.0	0	N/A	N/A
eggNOG-mapper	UHGV-1353429_27	742738.HMPREF9460_02495	526.0	0	N/A	N/A
Pfam	UHGV-1353429_27	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-1353429_27	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-1353429_27	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1353429_27	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-1353429_28	K02316	78.3	1.1e-22	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1353429_28	phrog_11992	114.7	1e-33	N/A	unknown function
UniRef90	UHGV-1353429_28	UniRef90_A0A7C6QT44	99.4	1.05e-22	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-1353429_28	1203606.HMPREF1526_01036	101.0	2.62e-22	N/A	N/A
PADLOC	UHGV-1353429_28	drt-cluster192	55.6	0.0000000000000014	DRT	DRT
Pfam	UHGV-1353429_28	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1353429_28	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
KOfam	UHGV-1353429_29	K03111	135.9	4.39999e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1353429_29	phrog_44	138.7	3.59994e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1353429_29	UniRef90_A0A1Q6T150	197.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1353429_29	411471.SUBVAR_04646	192.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1353429_29	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1353429_29	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1353429_29	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1353429_29	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1353429_29	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1353429_30	phrog_1227	143.8	9.69699e-43	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1353429_30	UniRef90_A0A7V6VUR0	115.0	2.45e-27	N/A	N/A
eggNOG-mapper	UHGV-1353429_30	861454.HMPREF9099_00347	105.0	4.34e-24	N/A	N/A
Pfam	UHGV-1353429_30	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-1353429_30	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1353429_30	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-1353429_31	phrog_21613	104.0	9.3e-31	N/A	unknown function
eggNOG-mapper	UHGV-1353429_31	1300143.CCAV010000006_gene4343	75.9	0.0000000000000091	N/A	N/A
KOfam	UHGV-1353429_36	K22300	40.5	0.000000000047	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1353429_36	phrog_2439	42.6	0.0000000000061	transcriptional regulator	transcription regulation
UniRef90	UHGV-1353429_36	UniRef90_A0A6N2UL50	97.4	5.12e-25	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-1353429_36	1504823.CCMM01000008_gene1079	63.5	0.00000000000149	sequence-specific DNA binding	N/A
Pfam	UHGV-1353429_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1353429_36	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1353429_36	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1353429_37	K22300	54.4	0.0000000000000027	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1353429_37	phrog_2967	64.4	1.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1353429_37	UniRef90_A0A412UNH6	81.3	1.88e-17	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1353429_37	911104.AEKT01000001_gene15	68.9	0.000000000000204	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1353429_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1353429_37	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1353429_37	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1353429_38	phrog_87	46.3	0.00000000000048	metallo-protease	other
UniRef90	UHGV-1353429_38	UniRef90_UPI001C3AA0FC	134.0	1.06e-37	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1353429_38	663278.Ethha_2376	90.1	3.53e-21	N/A	N/A
structural_annotation	UHGV-1353429_38	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1353429_39	K03466	233.5	0	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	N/A
PHROG	UHGV-1353429_39	phrog_1358	128.9	2e-38	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1353429_39	UniRef90_A0A3A6JY26	325.0	0	N/A	N/A
eggNOG-mapper	UHGV-1353429_39	411471.SUBVAR_05502	221.0	0	Belongs to the FtsK SpoIIIE SftA family	N/A
PADLOC	UHGV-1353429_39	ZorD1_00005	79.0	5e-23	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-1353429_39	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
Pfam	UHGV-1353429_39	PF09397	N/A	N/A	Ftsk gamma domain	FtsK_gamma
Pfam	UHGV-1353429_39	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-1353429_39	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
KOfam	UHGV-1353429_40	K06400	365.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1353429_40	phrog_95	372.7	0	integrase	integration and excision
UniRef90	UHGV-1353429_40	UniRef90_UPI001D0F283A	617.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1353429_40	718252.FP2_01160	594.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1353429_40	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1353429_40	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1353429_40	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1353429_40	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1353429_40	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1353429_41	phrog_1129	61.6	9.8e-18	holin	lysis
UniRef90	UHGV-1353429_41	UniRef90_A0A367FT42	172.0	0	Enolase	N/A
eggNOG-mapper	UHGV-1353429_41	1007096.BAGW01000036_gene2663	112.0	2.73e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1353429_41	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1353429_41	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1353429_42	phrog_1863	78.4	4.9e-23	N/A	unknown function
eggNOG-mapper	UHGV-1353429_42	693746.OBV_18260	106.0	3.04e-29	N/A	N/A
KOfam	UHGV-1353429_43	K19304	126.9	2e-37	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-1353429_43	phrog_10030	98.7	2.3e-29	tail length tape measure protein	tail
UniRef90	UHGV-1353429_43	UniRef90_A0A367G061	311.0	0	Peptidase_M23 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-1353429_43	1487953.JMKF01000006_gene5804	104.0	4.95e-23	PFAM Peptidase family M23	N/A
Pfam	UHGV-1353429_43	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-1353429_43	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-1353429_43	PF01551,NF040883	N/A	N/A	N/A	N/A
KOfam	UHGV-1353429_45	K03646	46.7	0.0000000000007	tolA; colicin import membrane protein	N/A
eggNOG-mapper	UHGV-1353429_45	476272.RUMHYD_00002	87.4	0.00000000000000543	N/A	N/A
structural_annotation	UHGV-1353429_45	PF10651	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1353429	Yes	33,107	58	86	1
UHGV-0064743	No	30,688	57	79	1
UHGV-1500558	No	28,836	58	74	1
UHGV-1073634	No	23,943	59	62	1
UHGV-1085689	No	13,354	58	34	1