vOTU vOTU-018962

vOTU: vOTU-018962

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-018962
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00668 → vOTU-018962
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Megasphaeraceae → Megasphaera → Megasphaera sp000417505
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1287097
Biosample ID	SAMEA3951678
Genome length (bp)	27,334 bps
CheckV completeness	60.93% (Medium-quality)
CDS count	37
CDS density	92.28%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Megasphaeraceae → Megasphaera → Megasphaera sp000417505	Total connections	26	Host agreement	73.08
PHIST-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Megasphaeraceae → Caecibacter → Caecibacter hominis	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 60.93)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1287097_1	phrog_1419	45.6	0.0000000000004	tail protein	tail
eggNOG-mapper	UHGV-1287097_2	910314.HMPREF9220_1078	54.3	0.0000000514	N/A	N/A
structural_annotation	UHGV-1287097_2	PF16407,NF032891,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-1287097_3	phrog_5717	75.1	6.8e-22	tail protein	tail
structural_annotation	UHGV-1287097_3	COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-1287097_4	phrog_521	111.1	3.5e-33	tail protein	tail
UniRef90	UHGV-1287097_4	UniRef90_UPI000CF9808B	366.0	0	N/A	N/A
eggNOG-mapper	UHGV-1287097_4	1111454.HMPREF1250_0159	171.0	0	N/A	N/A
Pfam	UHGV-1287097_4	PF10076	N/A	N/A	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
COG	UHGV-1287097_4	COG3778	N/A	N/A	N/A	N/A
PHROG	UHGV-1287097_5	phrog_6	166.2	0	baseplate protein	tail
UniRef90	UHGV-1287097_5	UniRef90_UPI00190E9FD9	426.0	0	baseplate J/gp47 family protein	N/A
eggNOG-mapper	UHGV-1287097_5	1111454.HMPREF1250_0160	334.0	0	Baseplate J-like protein	N/A
Pfam	UHGV-1287097_5	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
COG	UHGV-1287097_5	COG3299	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1287097_5	PF04865,PF21379,MF_04102,TIGR02243,COG3299	N/A	N/A	N/A	N/A
PHROG	UHGV-1287097_6	phrog_120	84.8	8.7e-25	baseplate protein	tail
UniRef90	UHGV-1287097_6	UniRef90_UPI000F8DC559	172.0	0	N/A	N/A
eggNOG-mapper	UHGV-1287097_6	546273.VEIDISOL_00728	162.0	0	N/A	N/A
Pfam	UHGV-1287097_6	PF10934	N/A	N/A	N/A	DUF2634
COG	UHGV-1287097_6	COG3628	N/A	N/A	Phage baseplate assembly protein W	N/A
structural_annotation	UHGV-1287097_6	PF10934,MF_02010,TIGR03357,COG3628	N/A	N/A	N/A	N/A
PHROG	UHGV-1287097_7	phrog_579	86.1	2.7e-25	N/A	unknown function
UniRef90	UHGV-1287097_7	UniRef90_UPI000CFA1C61	192.0	0	N/A	N/A
eggNOG-mapper	UHGV-1287097_7	546273.VEIDISOL_00727	151.0	2.8026e-45	N/A	N/A
Pfam	UHGV-1287097_7	PF10844	N/A	N/A	N/A	DUF2577
structural_annotation	UHGV-1287097_7	PF10844,COG0186	N/A	N/A	N/A	N/A
PHROG	UHGV-1287097_8	phrog_400	254.5	0	tail protein	tail
UniRef90	UHGV-1287097_8	UniRef90_UPI000CF8ACDE	714.0	0	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-1287097_8	1111454.HMPREF1250_0162	579.0	0	PFAM Phage late control gene D protein (GPD)	N/A
Pfam	UHGV-1287097_8	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
COG	UHGV-1287097_8	COG4193	N/A	N/A	Beta- N-acetylglucosaminidase	N/A
structural_annotation	UHGV-1287097_8	PF14594,PF18013,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1287097_9	phrog_380	163.1	0	endolysin	lysis
UniRef90	UHGV-1287097_9	UniRef90_UPI000CFA067D	332.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1287097_9	546273.VEIDISOL_00725	224.0	0	PFAM LysM domain	N/A
Pfam	UHGV-1287097_9	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1287097_9	COG1652	N/A	N/A	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	N/A
PHROG	UHGV-1287097_10	phrog_12798	49.9	0.000000000000032	N/A	unknown function
eggNOG-mapper	UHGV-1287097_10	1042156.CXIVA_01700	179.0	1.4013e-45	tape measure	N/A
COG	UHGV-1287097_10	COG5281	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-1287097_11	phrog_389	112.6	2.5e-33	tail protein XkdN-like	tail
UniRef90	UHGV-1287097_11	UniRef90_T3D7L0	111.0	9.2e-29	Phage XkdN-like family protein	N/A
eggNOG-mapper	UHGV-1287097_11	1151292.QEW_3490	111.0	1.54e-29	Phage XkdN-like tail assembly chaperone protein, TAC	N/A
Pfam	UHGV-1287097_11	PF08890	N/A	N/A	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
structural_annotation	UHGV-1287097_11	PF08890,COG4518	N/A	N/A	N/A	N/A
PHROG	UHGV-1287097_12	phrog_365	150.9	4.2039e-45	tail protein	tail
UniRef90	UHGV-1287097_12	UniRef90_UPI000CF89473	191.0	0	phage tail tube protein	N/A
eggNOG-mapper	UHGV-1287097_12	1123511.KB905868_gene174	171.0	0	Phage tail tube protein	N/A
Pfam	UHGV-1287097_12	PF09393	N/A	N/A	Phage tail tube protein	DUF2001
structural_annotation	UHGV-1287097_12	PF09393,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1287097_13	phrog_279	346.7	0	tail sheath	tail
UniRef90	UHGV-1287097_13	UniRef90_UPI000CF9E28F	541.0	0	phage tail sheath subtilisin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1287097_13	696281.Desru_1315	424.0	0	PFAM Phage tail sheath protein	N/A
Pfam	UHGV-1287097_13	PF17481	N/A	N/A	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
Pfam	UHGV-1287097_13	PF04984	N/A	N/A	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
Pfam	UHGV-1287097_13	PF17482	N/A	N/A	Phage tail sheath C-terminal domain	Phage_sheath_1C
structural_annotation	UHGV-1287097_13	PF17482,PF04984,PF17481,COG4386	N/A	N/A	N/A	N/A
PHROG	UHGV-1287097_14	phrog_966	42.4	0.0000000000088	N/A	unknown function
PHROG	UHGV-1287097_15	phrog_525	73.5	3.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-1287097_15	768710.DesyoDRAFT_5212	70.1	0.000000000000196	N/A	N/A
Pfam	UHGV-1287097_15	PF20765	N/A	N/A	N/A	DUF6838
structural_annotation	UHGV-1287097_15	PF20765,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1287097_16	phrog_5	71.5	1.8e-20	tail completion or Neck1 protein	connector
UniRef90	UHGV-1287097_16	UniRef90_UPI000CF889F3	131.0	8.25e-37	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1287097_16	862517.HMPREF9225_1644	90.5	1.39e-21	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1287097_16	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1287097_16	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1287097_17	phrog_615	66.7	3e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-1287097_17	1042156.CXIVA_01780	67.4	0.00000000000109	N/A	N/A
structural_annotation	UHGV-1287097_17	PF12206,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1287097_18	1111454.HMPREF1250_0173	95.1	1.46e-23	N/A	N/A
structural_annotation	UHGV-1287097_18	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-1287097_19	phrog_422	303.1	0	major head protein	head and packaging
UniRef90	UHGV-1287097_19	UniRef90_R5SNJ0	355.0	0	Lj928 prophage protein	N/A
eggNOG-mapper	UHGV-1287097_19	888060.HMPREF9081_1550	338.0	0	N/A	N/A
structural_annotation	UHGV-1287097_19	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1287097_20	phrog_194	168.0	0	head scaffolding protein	head and packaging
UniRef90	UHGV-1287097_20	UniRef90_UPI000CF9B553	166.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1287097_20	1408823.AXUS01000024_gene2715	121.0	4.1e-32	Phage minor structural protein GP20	N/A
Pfam	UHGV-1287097_20	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1287097_20	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1287097_22	phrog_115	367.0	0	minor head protein	head and packaging
UniRef90	UHGV-1287097_22	UniRef90_UPI000CF99D93	420.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1287097_22	1111454.HMPREF1250_0178	223.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-1287097_22	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1287097_22	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1287097_22	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1287097_22	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1287097_23	phrog_64	311.1	0	portal protein	head and packaging
UniRef90	UHGV-1287097_23	UniRef90_UPI00135B39E5	587.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1287097_23	1203606.HMPREF1526_00321	427.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1287097_23	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1287097_23	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1287097_24	K06909	397.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1287097_24	phrog_3717	189.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1287097_24	UniRef90_A0A1M6P1A0	687.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1287097_24	1232428.CAVO010000021_gene807	621.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1287097_24	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1287097_24	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1287097_24	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1287097_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1287097_24	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1287097_25	K07474	65.6	1.4e-18	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1287097_25	phrog_51	73.5	2.1e-21	terminase small subunit	head and packaging
UniRef90	UHGV-1287097_25	UniRef90_A0A413QU90	207.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1287097_25	1000569.HMPREF1040_0201	172.0	0	terminase, small subunit	N/A
Pfam	UHGV-1287097_25	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1287097_25	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1287097_25	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1287097_26	phrog_36	75.0	1.2e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-1287097_26	UniRef90_U7ULD4	221.0	0	PF07374 family protein	N/A
eggNOG-mapper	UHGV-1287097_26	1111454.HMPREF1250_1040	221.0	0	N/A	N/A
Pfam	UHGV-1287097_26	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1287097_26	PF07374,TIGR02984,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1287097_27	phrog_4074	96.6	1.2e-28	N/A	unknown function
eggNOG-mapper	UHGV-1287097_27	1232428.CAVO010000003_gene1016	72.0	0.00000000000000872	N/A	N/A
structural_annotation	UHGV-1287097_27	TIGR04550	N/A	N/A	N/A	N/A
KOfam	UHGV-1287097_28	K01160	55.4	0.0000000000000016	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1287097_28	phrog_140	123.0	1.8e-36	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1287097_28	UniRef90_A0A848ESG3	166.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1287097_28	706434.HMPREF9429_00539	129.0	1.11e-35	crossover junction endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1287097_28	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1287097_28	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
PHROG	UHGV-1287097_29	phrog_98	100.3	1.5e-29	N/A	unknown function
UniRef90	UHGV-1287097_29	UniRef90_A0A0J6WTJ8	157.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1287097_29	431943.CKL_1904	75.5	0.00000000000000349	YopX protein	N/A
Pfam	UHGV-1287097_29	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1287097_29	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1287097_29	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-1287097_32	UniRef90_UPI0008392BD5	48.1	0.00000941	N/A	N/A
PHROG	UHGV-1287097_34	phrog_9804	158.4	0	N/A	unknown function
UniRef90	UHGV-1287097_34	UniRef90_A0A1C5TFI8	160.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1287097_34	1273103.NM10_01154	246.0	0	N/A	N/A
structural_annotation	UHGV-1287097_34	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1287097_35	phrog_5968	144.5	6.09565e-43	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1287097_35	UniRef90_UPI000943C55F	442.0	0	phage replisome organizer N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1287097_35	1273103.NM10_01159	181.0	0	Replication initiation and membrane attachment	N/A
Pfam	UHGV-1287097_35	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
Pfam	UHGV-1287097_35	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1287097_35	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-1287097_35	PF09681,TIGR01714,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-1287097_36	K07455	162.5	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1287097_36	phrog_148	178.9	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1287097_36	UniRef90_UPI0018C50A8E	328.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1287097_36	1196028.ALEF01000043_gene487	193.0	0	RecT family	N/A
Pfam	UHGV-1287097_36	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1287097_36	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1287097_36	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1287097_36	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1287097_37	phrog_434	339.6	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1287097_37	UniRef90_U7UMV1	370.0	0	YqaJ-like viral recombinase domain protein	N/A
eggNOG-mapper	UHGV-1287097_37	1111454.HMPREF1250_0282	370.0	0	YqaJ viral recombinase family protein	N/A
Pfam	UHGV-1287097_37	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1287097_37	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1287097_37	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1287097_37	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1287097	Yes	27,334	47	61	1
UHGV-0110812	No	24,261	46	54	1
UHGV-1735571	No	21,225	47	47	1
UHGV-1732679	No	15,399	47	34	1
UHGV-1618603	No	13,238	47	29	1