vOTU vOTU-019573

vOTU: vOTU-019573

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-019573
Number of genomes	4
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00187 → vGENUS-00579 → vOTU-019573
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0298891
Biosample ID	SAMN11885869
Genome length (bp)	38,657 bps
CheckV completeness	84.94% (Medium-quality)
CDS count	63
CDS density	92.87%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	212	Host agreement	88.21
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 84.94)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0298891_1	1280692.AUJL01000009_gene2997	50.1	0.00000492	DNA polymerase elongation subunit (Family B)	N/A
COG	UHGV-0298891_1	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
PHROG	UHGV-0298891_2	phrog_111	139.9	1.49995e-41	DNA methyltransferase	other
UniRef90	UHGV-0298891_2	UniRef90_A0A1L5KS67	177.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
eggNOG-mapper	UHGV-0298891_2	411468.CLOSCI_00567	176.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0298891_2	oMTase_00015	161.0	0	orphan methyltransferase	RM
Pfam	UHGV-0298891_2	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0298891_2	PF05869,TIGR01712,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-0298891_3	phrog_155	63.5	3.5e-18	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0298891_3	UniRef90_UPI00164E6A42	459.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0298891_3	1121866.AUGK01000003_gene1403	89.0	2.9e-17	DNA replication proofreading	N/A
Pfam	UHGV-0298891_3	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0298891_3	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
structural_annotation	UHGV-0298891_3	PF04404	N/A	N/A	N/A	N/A
PHROG	UHGV-0298891_4	phrog_434	92.8	4.2e-27	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0298891_4	UniRef90_UPI00164ECEF5	691.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0298891_4	1121866.AUGK01000003_gene1405	360.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0298891_4	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
COG	UHGV-0298891_4	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0298891_4	PF09588,TIGR03033,COG5377	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0298891_7	PF05037,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-0298891_8	phrog_1485	103.4	2.5e-30	N/A	unknown function
UniRef90	UHGV-0298891_8	UniRef90_UPI00164CE11C	182.0	0	nucleotide modification associated domain-containing protein	N/A
eggNOG-mapper	UHGV-0298891_8	1415774.U728_1099	104.0	5.89e-28	N/A	N/A
Pfam	UHGV-0298891_8	PF07659	N/A	N/A	Nucleotide modification associated domain 1	DUF1599
PHROG	UHGV-0298891_9	phrog_229	112.0	5.6e-33	MazG-like pyrophosphatase	other
UniRef90	UHGV-0298891_9	UniRef90_UPI001899D94E	194.0	0	nucleoside triphosphate pyrophosphohydrolase family protein	N/A
eggNOG-mapper	UHGV-0298891_9	428125.CLOLEP_01391	126.0	3.27e-36	MazG nucleotide pyrophosphohydrolase domain	N/A
Pfam	UHGV-0298891_9	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-0298891_9	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-0298891_9	PF03819,MF_01020,NF001613,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-0298891_10	phrog_3154	43.4	0.0000000000069	N/A	unknown function
KOfam	UHGV-0298891_11	K03698	50.8	0.000000000000026	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-0298891_11	phrog_5889	106.4	2.1e-31	N/A	unknown function
UniRef90	UHGV-0298891_11	UniRef90_A0A1C5MUY3	244.0	0	Predicted HD-superfamily hydrolase	N/A
eggNOG-mapper	UHGV-0298891_11	1235800.C819_00499	166.0	0	metal-dependent phosphohydrolase, HD sub domain	N/A
COG	UHGV-0298891_11	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0298891_11	PF01966,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
KOfam	UHGV-0298891_12	K03465	190.8	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0298891_12	phrog_85	134.7	6e-40	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0298891_12	UniRef90_UPI001A9AFBB0	423.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0298891_12	1235797.C816_01399	258.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0298891_12	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-0298891_12	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-0298891_12	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-0298891_12	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0298891_15	phrog_30550	178.6	0	N/A	unknown function
UniRef90	UHGV-0298891_15	UniRef90_A0A2N2CRJ1	169.0	0	Hydrolase_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0298891_15	1519439.JPJG01000077_gene920	134.0	3.47e-38	Cell Wall Hydrolase	N/A
structural_annotation	UHGV-0298891_15	TIGR02869	N/A	N/A	N/A	N/A
PHROG	UHGV-0298891_16	phrog_1829	131.3	5.7e-39	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0298891_16	UniRef90_UPI00164DE9BA	509.0	0	primase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0298891_16	1121866.AUGK01000003_gene1409	212.0	0	Phage plasmid primase, P4 family domain protein	N/A
Pfam	UHGV-0298891_16	PF08708	N/A	N/A	Primase C terminal 1 (PriCT-1)	PriCT_1
COG	UHGV-0298891_16	COG4983	N/A	N/A	Primase-polymerase (Primpol) domain protein	N/A
structural_annotation	UHGV-0298891_16	PF08708,PF09250,COG4983	N/A	N/A	N/A	N/A
PHROG	UHGV-0298891_18	phrog_1156	317.6	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0298891_18	UniRef90_UPI00164E4416	1014.0	0	phage/plasmid primase, P4 family	N/A
eggNOG-mapper	UHGV-0298891_18	649747.HMPREF0083_00553	323.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0298891_18	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0298891_18	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0298891_18	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0298891_18	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0298891_18	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0298891_18	PF08706,PF05272,PF02257,MF_04000,NF005477,COG3378	N/A	N/A	N/A	N/A
PHROG	UHGV-0298891_19	phrog_599	48.2	0.00000000000024	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0298891_19	UniRef90_A0A845MWR1	51.6	0.000000267	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0298891_19	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0298891_19	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0298891_19	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0298891_19	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0298891_22	phrog_22389	46.0	0.00000000000055	N/A	unknown function
structural_annotation	UHGV-0298891_22	PF01402,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-0298891_28	K23779	41.4	0.000000000028	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0298891_28	phrog_8	44.2	0.0000000000045	transcriptional regulator	transcription regulation
UniRef90	UHGV-0298891_28	UniRef90_A0A1V5X1Q4	50.8	0.000000747	HTH-type transcriptional regulator SinR	N/A
eggNOG-mapper	UHGV-0298891_28	1123263.AUKY01000012_gene1991	48.1	0.00000145	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0298891_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0298891_28	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0298891_28	PF13560,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0298891_29	phrog_606	44.2	0.0000000000015	terminase small subunit	head and packaging
UniRef90	UHGV-0298891_29	UniRef90_UPI001C012D23	309.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0298891_29	1280663.ATVR01000009_gene2143	67.0	0.0000000000192	N/A	N/A
Pfam	UHGV-0298891_29	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0298891_29	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0298891_31	phrog_4264	65.7	5.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-0298891_31	442493.A8E2H1_BPPHE	52.4	0.00000021	N/A	N/A
structural_annotation	UHGV-0298891_32	PF13742,MF_01959,NF009635,COG3390	N/A	N/A	N/A	N/A
UniRef90	UHGV-0298891_35	UniRef90_UPI001C02D1DF	151.0	0	winged helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0298891_35	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
structural_annotation	UHGV-0298891_35	PF20075,TIGR02612,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0298891_36	UniRef90_A0A0U9HC82	107.0	9.92e-25	Anti-repressor protein	N/A
eggNOG-mapper	UHGV-0298891_36	1151292.QEW_2076	99.8	1.59e-22	BRO family, N-terminal domain	N/A
COG	UHGV-0298891_36	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0298891_36	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0298891_37	PF13744,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0298891_38	K14060	122.8	3.8e-36	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0298891_38	phrog_125	136.5	2e-40	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0298891_38	UniRef90_UPI001C023A41	382.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0298891_38	1408423.JHYA01000001_gene988	158.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0298891_38	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0298891_38	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0298891_38	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0298891_39	phrog_8545	54.5	0.0000000000000022	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0298891_39	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
structural_annotation	UHGV-0298891_39	PF12869,MF_01959,NF009635,COG0361	N/A	N/A	N/A	N/A
PHROG	UHGV-0298891_40	phrog_38	154.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0298891_40	UniRef90_UPI00164E3A67	1092.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0298891_40	1298920.KI911353_gene2682	289.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0298891_40	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0298891_40	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0298891_40	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0298891_41	phrog_64	213.2	0	portal protein	head and packaging
UniRef90	UHGV-0298891_41	UniRef90_UPI001C02F349	712.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0298891_41	1123263.AUKY01000015_gene1609	446.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0298891_41	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0298891_41	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-0298891_43	UniRef90_A0A7C7EK05	59.7	0.00000011	N/A	N/A
PHROG	UHGV-0298891_44	phrog_247	266.3	0	major head protein	head and packaging
UniRef90	UHGV-0298891_44	UniRef90_A0A3D0LY55	386.0	0	Coat protein	N/A
eggNOG-mapper	UHGV-0298891_44	1304866.K413DRAFT_3038	306.0	0	N/A	N/A
structural_annotation	UHGV-0298891_44	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0298891_46	UniRef90_UPI00164E20D5	183.0	0	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0298891_46	1298920.KI911353_gene2658	64.7	0.00000000000411	N/A	N/A
Pfam	UHGV-0298891_46	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0298891_46	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0298891_47	1121866.AUGK01000003_gene1432	69.7	0.000000000000179	N/A	N/A
eggNOG-mapper	UHGV-0298891_48	1232453.BAIF02000058_gene1631	63.5	0.000000000387	N/A	N/A
structural_annotation	UHGV-0298891_49	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0298891_50	phrog_158	59.8	6.1e-17	major tail protein	tail
UniRef90	UHGV-0298891_50	UniRef90_UPI00164D954A	266.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0298891_50	1232453.BAIF02000058_gene1634	101.0	1.11e-25	N/A	N/A
Pfam	UHGV-0298891_50	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0298891_50	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0298891_51	UniRef90_UPI00164D364F	201.0	0	N/A	N/A
eggNOG-mapper	UHGV-0298891_51	469596.HMPREF9488_01311	87.4	7.29e-21	N/A	N/A
Pfam	UHGV-0298891_51	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0298891_51	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0298891_52	1121333.JMLH01000047_gene1011	81.3	1.99e-17	N/A	N/A
PHROG	UHGV-0298891_53	phrog_1535	150.1	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0298891_53	1121866.AUGK01000003_gene1437	283.0	0	phage tail tape measure protein	N/A
COG	UHGV-0298891_53	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-0298891_53	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0298891_54	phrog_1194	131.3	3.4e-39	N/A	unknown function
UniRef90	UHGV-0298891_54	UniRef90_A0A4U9RD70	108.0	2.38e-28	Lj965 prophage protein	N/A
eggNOG-mapper	UHGV-0298891_54	1280692.AUJL01000027_gene2149	108.0	3.88e-29	N/A	N/A
Pfam	UHGV-0298891_54	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0298891_54	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0298891_55	phrog_6616	126.9	6.9e-39	tail protein	tail
UniRef90	UHGV-0298891_55	UniRef90_UPI0008BC4959	80.9	0.00000000000254	gp58-like family protein	N/A
eggNOG-mapper	UHGV-0298891_55	469596.HMPREF9488_01318	286.0	0	N/A	N/A
structural_annotation	UHGV-0298891_55	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0298891_56	phrog_372	200.2	0	tail protein	tail
UniRef90	UHGV-0298891_56	UniRef90_UPI001C0AA9E4	153.0	1.68e-36	N/A	N/A
eggNOG-mapper	UHGV-0298891_56	1235802.C823_05263	112.0	2.98e-23	N/A	N/A
Pfam	UHGV-0298891_56	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0298891_56	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0298891_56	PF05895,NF010681,COG3401	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0298891_57	1536772.R70723_29220	63.9	0.00000016	ATPase involved in DNA repair	N/A
COG	UHGV-0298891_57	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0298891_58	PF00629,NF033675	N/A	N/A	N/A	N/A
PHROG	UHGV-0298891_59	phrog_1794	44.0	0.0000000000038	amidase	lysis
UniRef90	UHGV-0298891_59	UniRef90_A0A7X5ECQ1	68.6	0.000000000000145	N-acetylmuramoyl-L-alanine amidase (Fragment)	N/A
eggNOG-mapper	UHGV-0298891_59	658655.HMPREF0988_00523	70.1	0.000000000000336	Ami_2	N/A
COG	UHGV-0298891_59	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
PHROG	UHGV-0298891_60	phrog_1794	66.5	6e-19	amidase	lysis
UniRef90	UHGV-0298891_60	UniRef90_R5AZE6	209.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-0298891_60	1235802.C823_04986	118.0	1.55e-28	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-0298891_60	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
PHROG	UHGV-0298891_61	phrog_4105	80.0	2.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0298891_61	592026.GCWU0000282_003290	86.7	9.92e-21	N/A	N/A
PHROG	UHGV-0298891_62	phrog_1129	64.9	9.3e-19	holin	lysis
UniRef90	UHGV-0298891_62	UniRef90_A0A2V2CUX8	93.6	3.29e-23	Enolase	N/A
eggNOG-mapper	UHGV-0298891_62	742740.HMPREF9474_03522	93.6	5.52e-24	N/A	N/A
Pfam	UHGV-0298891_62	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0298891_62	PF06946	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0298891	Yes	38,657	50	85	1
UHGV-0156977	No	33,893	49	75	1
UHGV-1815263	No	19,978	51	46	1
UHGV-1862238	No	10,553	51	24	1