vOTU vOTU-019784

vOTU: vOTU-019784

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-019784
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00831 → vGENUS-04027 → vOTU-019784
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0180399
Biosample ID	SAMN09781740
Genome length (bp)	51,682 bps
CheckV completeness	88.49% (Medium-quality)
CDS count	59
CDS density	94.80%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens	Total connections	329	Host agreement	70.21
PHIST-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.49)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0180399_1	phrog_21718	44.8	0.0000000000022	N/A	unknown function
eggNOG-mapper	UHGV-0180399_2	476272.RUMHYD_01953	49.7	0.00000062	N/A	N/A
PHROG	UHGV-0180399_3	phrog_16490	85.7	2.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-0180399_3	445972.ANACOL_01880	80.1	0.00000000000000333	N/A	N/A
structural_annotation	UHGV-0180399_4	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180399_5	1378168.N510_03079	59.3	0.0000000203	N/A	N/A
KOfam	UHGV-0180399_6	K06400	384.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0180399_6	phrog_95	366.4	0	integrase	integration and excision
UniRef90	UHGV-0180399_6	UniRef90_E8LBZ4	419.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0180399_6	626939.HMPREF9443_00357	419.0	0	overlaps another CDS with the same product name	N/A
Pfam	UHGV-0180399_6	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0180399_6	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0180399_6	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0180399_6	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0180399_6	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0180399_7	K07448	101.7	8.3e-30	mrr; restriction system protein	N/A
PHROG	UHGV-0180399_7	phrog_17577	106.3	2.1e-31	restriction endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180399_7	UniRef90_A0A2V2ZQP8	87.0	2.6e-17	Restriction system protein	N/A
eggNOG-mapper	UHGV-0180399_7	1196322.A370_02472	72.8	0.00000000000278	Restriction endonuclease	N/A
PADLOC	UHGV-0180399_7	ZorD1_00005	40.7	0.000000000021	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0180399_7	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0180399_7	COG1715	N/A	N/A	Restriction endonuclease Mrr	N/A
UniRef90	UHGV-0180399_9	UniRef90_A0A1M6KQH6	89.4	6.42e-21	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0180399_9	1027292.HMPREF9372_3406	68.2	0.000000000000672	Helix-turn-helix	N/A
Pfam	UHGV-0180399_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0180399_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0180399_10	K07729	64.0	3.2e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0180399_10	phrog_3	47.8	0.00000000000063	transcriptional repressor	transcription regulation
UniRef90	UHGV-0180399_10	UniRef90_A0A1X1KP04	59.3	0.000000000424	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0180399_10	717605.Theco_0932	53.5	0.0000000101	Helix-turn-helix	N/A
PADLOC	UHGV-0180399_10	retron_type_VI_hth_cluster2_1	54.0	0.000000000000005	N/A	Retron
Pfam	UHGV-0180399_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0180399_10	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0180399_10	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0180399_15	phrog_14367	45.1	0.00000000000063	N/A	unknown function
UniRef90	UHGV-0180399_15	UniRef90_A0A3N5LBU6	53.5	0.000000298	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0180399_15	1121934.AUDX01000014_gene1571	51.2	0.000000613	Lysin motif	N/A
Pfam	UHGV-0180399_15	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0180399_15	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0180399_15	MF_02014,NF010723	N/A	N/A	N/A	N/A
PHROG	UHGV-0180399_18	phrog_1366	298.8	0	N/A	unknown function
UniRef90	UHGV-0180399_18	UniRef90_UPI001EDFC883	365.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0180399_18	555779.Dthio_PD3616	266.0	0	SMART AAA ATPase	N/A
Pfam	UHGV-0180399_18	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0180399_18	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0180399_18	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0180399_19	phrog_72	59.7	4.4e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0180399_19	445972.ANACOL_01825	114.0	9e-30	N/A	N/A
structural_annotation	UHGV-0180399_19	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0180399_20	phrog_270	104.0	2e-30	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180399_20	UniRef90_UPI0006877B23	114.0	6.43e-27	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0180399_20	742741.HMPREF9475_03963	110.0	8.23e-26	N/A	N/A
Pfam	UHGV-0180399_20	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0180399_20	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0180399_20	PF02295,MF_01819,TIGR04176,COG3355	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180399_21	UniRef90_A0A316S7J6	99.0	1.28e-22	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0180399_21	1280706.AUJE01000046_gene1152	70.5	0.00000000000177	N/A	N/A
structural_annotation	UHGV-0180399_21	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0180399_23	K22300	52.2	0.000000000000013	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0180399_23	phrog_8	41.4	0.00000000003	transcriptional regulator	transcription regulation
Pfam	UHGV-0180399_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0180399_23	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0180399_23	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180399_28	UniRef90_A0A6N7WVF3	57.4	0.0000000821	Restriction endonuclease subunit S	N/A
PHROG	UHGV-0180399_29	phrog_2776	68.1	1e-19	N/A	unknown function
UniRef90	UHGV-0180399_29	UniRef90_UPI001899258E	84.0	2.33e-17	MmcB family DNA repair protein	N/A
Pfam	UHGV-0180399_29	PF06319	N/A	N/A	DNA repair protein MmcB-like	MmcB-like
structural_annotation	UHGV-0180399_29	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180399_30	PF21098	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180399_34	PF16857,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
KOfam	UHGV-0180399_36	K03111	132.9	3.9e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0180399_36	phrog_44	140.9	8.29989e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180399_36	UniRef90_R6WK64	182.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0180399_36	626939.HMPREF9443_01150	169.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0180399_36	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0180399_36	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0180399_36	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0180399_36	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0180399_36	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0180399_37	phrog_190	147.1	9.52883e-44	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180399_37	UniRef90_UPI0018C4B0C5	126.0	2.24e-35	N/A	N/A
eggNOG-mapper	UHGV-0180399_37	1347392.CCEZ01000043_gene417	115.0	7.79e-32	N/A	N/A
Pfam	UHGV-0180399_37	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0180399_37	PF06356	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180399_38	401526.TcarDRAFT_1279	75.1	0.00000000000000478	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-0180399_38	PF05263,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180399_39	1280689.AUJC01000003_gene960	49.7	0.00000221	N/A	N/A
KOfam	UHGV-0180399_40	K07474	83.9	4.1e-24	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0180399_40	phrog_51	85.5	6.4e-25	terminase small subunit	head and packaging
UniRef90	UHGV-0180399_40	UniRef90_UPI000833FD0A	99.8	4.49e-24	terminase small subunit	N/A
eggNOG-mapper	UHGV-0180399_40	1391647.AVSV01000003_gene1801	91.3	2.18e-21	Terminase small subunit	N/A
Pfam	UHGV-0180399_40	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0180399_40	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0180399_40	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0180399_41	K06909	267.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0180399_41	phrog_3717	235.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0180399_41	UniRef90_A0A316S7L1	766.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0180399_41	1009370.ALO_12436	565.0	0	Phage terminase, large subunit	N/A
Pfam	UHGV-0180399_41	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0180399_41	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0180399_41	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0180399_41	PF04466,PF20454,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
Pfam	UHGV-0180399_42	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-0180399_42	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0180399_43	phrog_156	425.8	0	portal protein	head and packaging
UniRef90	UHGV-0180399_43	UniRef90_F7NK66	510.0	0	Putative phage portal protein	N/A
eggNOG-mapper	UHGV-0180399_43	401526.TcarDRAFT_1284	539.0	0	Tfp pilus assembly protein FimV	N/A
COG	UHGV-0180399_43	COG3170	N/A	N/A	Type IV pilus assembly protein FimV	N/A
structural_annotation	UHGV-0180399_43	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0180399_46	phrog_334	301.0	0	major head protein	head and packaging
UniRef90	UHGV-0180399_46	UniRef90_A0A316SB53	441.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0180399_46	401526.TcarDRAFT_1286	315.0	0	N/A	N/A
Pfam	UHGV-0180399_46	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0180399_46	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0180399_46	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0180399_47	phrog_399	50.0	0.000000000000028	structural protein	head and packaging
Pfam	UHGV-0180399_47	PF20387	N/A	N/A	N/A	DUF6682
structural_annotation	UHGV-0180399_47	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0180399_48	phrog_32822	58.3	1.1e-17	virion structural protein	head and packaging
UniRef90	UHGV-0180399_48	UniRef90_A0A1G6NQU3	323.0	0	Flagellin FlgL	N/A
eggNOG-mapper	UHGV-0180399_48	1111454.HMPREF1250_0263	144.0	1.06e-32	cellulase activity	N/A
COG	UHGV-0180399_48	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0180399_49	phrog_2427	72.9	4.2e-21	N/A	unknown function
KOfam	UHGV-0180399_51	K06236	151.8	2.8026e-45	COL1A; collagen type I alpha	N/A
PHROG	UHGV-0180399_51	phrog_6320	131.6	0	tail fiber protein	tail
Pfam	UHGV-0180399_51	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0180399_51	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0180399_51	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180399_52	PF16116	N/A	N/A	N/A	N/A
PHROG	UHGV-0180399_53	phrog_1141	58.9	8.5e-17	tail fiber protein	tail
UniRef90	UHGV-0180399_53	UniRef90_A0A1Q6R2G9	216.0	0	N/A	N/A
eggNOG-mapper	UHGV-0180399_53	1286631.X805_38770	60.8	0.00000000495	N/A	N/A
Pfam	UHGV-0180399_53	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-0180399_53	PF14301	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180399_54	883156.HMPREF9282_00569	221.0	0	N/A	N/A
structural_annotation	UHGV-0180399_54	PF11134,MF_03008,NF010237,TIGR04362,COG4257	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180399_55	PF00765,MF_02210,NF007644,COG2153	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180399_56	UniRef90_A0A1G6NNF8	145.0	7.8e-38	Intein N-terminal splicing region	N/A
eggNOG-mapper	UHGV-0180399_56	1232428.CAVO010000067_gene416	157.0	2.05991e-43	N/A	N/A
PHROG	UHGV-0180399_58	phrog_10089	1520.9	0	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0180399_58	UniRef90_A0A010ZMB0	571.0	0	SNF2 family protein,Eco57I restriction endonuclease	N/A
eggNOG-mapper	UHGV-0180399_58	1029823.AFIE01000007_gene1881	1315.0	0	methylase	N/A
Pfam	UHGV-0180399_58	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
Pfam	UHGV-0180399_58	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
Pfam	UHGV-0180399_58	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0180399_58	COG0454	N/A	N/A	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0180399	Yes	51,682	45	88	1
UHGV-1532543	No	33,377	44	63	1
UHGV-0047341	No	28,501	44	54	1
UHGV-1711876	No	13,070	44	23	1