vOTU vOTU-019947

vOTU: vOTU-019947

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-019947
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 → vOTU-019947
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900539375
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-2006231
Biosample ID	N/A
Genome length (bp)	29,175 bps
CheckV completeness	76.55% (Medium-quality)
CDS count	46
CDS density	93.81%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage		Total connections		Host agreement
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900539375	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 76.55)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2006231_1	K06400	364.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2006231_1	phrog_95	405.6	0	integrase	integration and excision
UniRef90	UHGV-2006231_1	UniRef90_A0A1T4XIY8	627.0	0	Site-specific DNA recombinase	N/A
eggNOG-mapper	UHGV-2006231_1	86416.Clopa_0310	575.0	0	resolvase	N/A
Pfam	UHGV-2006231_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2006231_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-2006231_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-2006231_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2006231_1	PF00239,PF13408,PF14235,NF041201,COG1961,COG1579	N/A	N/A	N/A	N/A
UniRef90	UHGV-2006231_2	UniRef90_UPI001C1042B8	70.1	0.0000000000103	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2006231_2	1499683.CCFF01000014_gene3570	55.8	0.00000027	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-2006231_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-2006231_3	UniRef90_A0A1T5KEM5	80.5	1.47e-18	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-2006231_3	293826.Amet_2612	72.4	3.7e-16	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2006231_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2006231_3	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-2006231_3	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2006231_4	phrog_6499	142.3	1.3004e-42	transcriptional regulator	transcription regulation
UniRef90	UHGV-2006231_4	UniRef90_A0A1S8TVH0	153.0	2.8026e-45	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2006231_4	1415774.U728_1274	144.0	1.46996e-42	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2006231_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2006231_4	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-2006231_4	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2006231_11	1304284.L21TH_0487	150.0	2.10195e-44	N/A	N/A
eggNOG-mapper	UHGV-2006231_12	1540257.JQMW01000009_gene2678	85.9	2.02e-18	cell division	N/A
COG	UHGV-2006231_12	COG0849	N/A	N/A	Cell division ATPase FtsA	N/A
KOfam	UHGV-2006231_13	K18640	72.2	8.7e-21	parM, stbA; plasmid segregation protein ParM	N/A
PHROG	UHGV-2006231_13	phrog_691	72.1	6.7e-21	partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2006231_13	UniRef90_UPI000BE38D7F	122.0	5.63e-31	ParM/StbA family protein	N/A
eggNOG-mapper	UHGV-2006231_13	1280689.AUJC01000011_gene1499	85.1	1.09e-17	cell division	N/A
COG	UHGV-2006231_13	COG0849	N/A	N/A	Cell division ATPase FtsA	N/A
Pfam	UHGV-2006231_15	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
PHROG	UHGV-2006231_16	phrog_678	80.7	2.4e-23	replication initiation O-like	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2006231_16	1151292.QEW_4383	121.0	2.91e-30	N/A	N/A
structural_annotation	UHGV-2006231_16	PF08679,MF_01819,TIGR01889,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-2006231_17	K02314	496.8	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-2006231_17	phrog_19	345.5	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2006231_17	UniRef90_S6ELL9	508.0	0	Replicative DNA helicase	N/A
eggNOG-mapper	UHGV-2006231_17	1280689.AUJC01000011_gene1502	496.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-2006231_17	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-2006231_17	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
NCBIFam	UHGV-2006231_17	TIGR00665.1	N/A	N/A	replicative DNA helicase	N/A
COG	UHGV-2006231_17	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-2006231_17	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2006231_18	NF033495	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2006231_21	1414720.CBYM010000017_gene3115	62.8	0.000000000277	EXOIII	N/A
COG	UHGV-2006231_21	COG0847	N/A	N/A	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	N/A
Pfam	UHGV-2006231_23	PF13113	N/A	N/A	N/A	DUF3970
structural_annotation	UHGV-2006231_23	PF13113,NF008362,COG3978	N/A	N/A	N/A	N/A
UniRef90	UHGV-2006231_24	UniRef90_A0A1C6L9R5	70.9	0.0000000000000638	HTH dtxR-type domain-containing protein	N/A
Pfam	UHGV-2006231_24	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
eggNOG-mapper	UHGV-2006231_25	1280689.AUJC01000011_gene1510	53.9	0.0000000758	N/A	N/A
Pfam	UHGV-2006231_25	PF07374	N/A	N/A	N/A	DUF1492
PHROG	UHGV-2006231_26	phrog_9628	107.7	6.8e-32	N/A	unknown function
UniRef90	UHGV-2006231_26	UniRef90_UPI0016490A48	110.0	3.14e-29	DNA-binding response regulator	N/A
eggNOG-mapper	UHGV-2006231_26	86416.Clopa_0331	107.0	1.59e-28	N/A	N/A
Pfam	UHGV-2006231_26	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
structural_annotation	UHGV-2006231_26	PF06056,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-2006231_27	phrog_15827	99.6	1.5e-29	N/A	unknown function
UniRef90	UHGV-2006231_27	UniRef90_A0A3P6JPY1	75.5	2.04e-16	Zn-finger containing protein	N/A
eggNOG-mapper	UHGV-2006231_27	1280689.AUJC01000011_gene1511	89.0	1.73e-22	DNA-directed 5'-3' RNA polymerase activity	N/A
COG	UHGV-2006231_27	COG1996	N/A	N/A	DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger	N/A
structural_annotation	UHGV-2006231_27	PF09723,TIGR02605,COG1996	N/A	N/A	N/A	N/A
KOfam	UHGV-2006231_28	K04763	91.1	1.5e-26	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-2006231_28	phrog_216	132.0	3.6e-39	integrase	integration and excision
UniRef90	UHGV-2006231_28	UniRef90_A0A1I7G3C4	252.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-2006231_28	1211817.CCAT010000007_gene1044	221.0	0	integrase family	N/A
Pfam	UHGV-2006231_28	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2006231_28	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
PHROG	UHGV-2006231_29	phrog_309	123.6	1.1e-36	terminase small subunit	head and packaging
UniRef90	UHGV-2006231_29	UniRef90_A0A316MA76	220.0	0	Transposase	N/A
eggNOG-mapper	UHGV-2006231_29	457396.CSBG_01043	236.0	0	transposase activity	N/A
COG	UHGV-2006231_29	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-2006231_29	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-2006231_31	phrog_4581	113.1	2.1e-33	terminase small subunit	head and packaging
UniRef90	UHGV-2006231_31	UniRef90_A0A1C6JI31	374.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2006231_31	457396.CSBG_01044	349.0	0	HNH endonuclease	N/A
Pfam	UHGV-2006231_31	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2006231_31	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-2006231_31	PF13671,MF_03171,NF005251,NF008448,COG4639	N/A	N/A	N/A	N/A
PHROG	UHGV-2006231_32	phrog_1066	71.7	9.4e-21	N/A	unknown function
UniRef90	UHGV-2006231_32	UniRef90_UPI001E5C7227	156.0	0	zinc-binding protein	N/A
eggNOG-mapper	UHGV-2006231_32	457396.CSBG_01045	155.0	0	N/A	N/A
structural_annotation	UHGV-2006231_32	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-2006231_33	phrog_9	293.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-2006231_33	UniRef90_A0A316ME49	790.0	0	Terminase	N/A
eggNOG-mapper	UHGV-2006231_33	457396.CSBG_01046	800.0	0	Terminase	N/A
Pfam	UHGV-2006231_33	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2006231_33	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2006231_33	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2006231_33	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2006231_34	phrog_12	169.7	0	portal protein	head and packaging
UniRef90	UHGV-2006231_34	UniRef90_A0A316MSJ3	633.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-2006231_34	457396.CSBG_01047	615.0	0	Portal protein	N/A
Pfam	UHGV-2006231_34	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-2006231_34	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2006231_34	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-2006231_35	K06904	132.7	2.1e-39	N/A	N/A
PHROG	UHGV-2006231_35	phrog_80	137.0	1.4e-40	head maturation protease	head and packaging
UniRef90	UHGV-2006231_35	UniRef90_A0A1C6JHX3	525.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-2006231_35	457396.CSBG_01049	539.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-2006231_35	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
Pfam	UHGV-2006231_35	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2006231_35	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2006231_35	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
UniRef90	UHGV-2006231_36	UniRef90_UPI00157576BA	52.4	0.000000651	phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-2006231_36	457396.CSBG_01050	114.0	4.87e-32	N/A	N/A
PHROG	UHGV-2006231_37	phrog_1951	94.7	5.7e-28	head-tail adaptor	connector
UniRef90	UHGV-2006231_37	UniRef90_UPI00071736EE	93.6	9.76e-23	phage head closure protein	N/A
eggNOG-mapper	UHGV-2006231_37	457396.CSBG_01051	101.0	1.68e-26	head-tail adaptor	N/A
NCBIFam	UHGV-2006231_37	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-2006231_37	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-2006231_37	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-2006231_38	UniRef90_UPI001A9B6FBF	184.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2006231_38	457396.CSBG_01052	148.0	4.34403e-44	N/A	N/A
Pfam	UHGV-2006231_38	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-2006231_38	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-2006231_38	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-2006231_39	phrog_957	48.6	0.00000000000011	head protein	head and packaging
eggNOG-mapper	UHGV-2006231_39	457396.CSBG_01053	66.2	0.00000000000255	N/A	N/A
structural_annotation	UHGV-2006231_39	PF11367,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2006231_40	phrog_885	185.4	0	major tail protein	tail
UniRef90	UHGV-2006231_40	UniRef90_UPI00149126AB	206.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-2006231_40	457396.CSBG_01054	200.0	0	Chitobiase/beta-hexosaminidase C-terminal domain	N/A
COG	UHGV-2006231_40	COG2273	N/A	N/A	Beta-glucanase, GH16 family	N/A
structural_annotation	UHGV-2006231_40	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2006231_41	phrog_1021	54.9	0.0000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-2006231_41	457396.CSBG_01055	69.7	0.0000000000000852	N/A	N/A
KOfam	UHGV-2006231_43	K20254	45.1	0.00000000000014	PLIN4; perilipin-4	N/A
PHROG	UHGV-2006231_43	phrog_1272	233.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-2006231_43	642492.Clole_1867	290.0	0	Phage tail tape measure protein TP901	N/A
Pfam	UHGV-2006231_43	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
Pfam	UHGV-2006231_43	PF02987	N/A	N/A	Late embryogenesis abundant protein	LEA_4
COG	UHGV-2006231_43	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-2006231_43	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-2006231_44	phrog_33	108.5	9.7e-32	distal tail protein Dit	tail
UniRef90	UHGV-2006231_44	UniRef90_A0A174QR32	211.0	0	Tail component family protein	N/A
eggNOG-mapper	UHGV-2006231_44	1499683.CCFF01000017_gene2156	197.0	0	tail component	N/A
Pfam	UHGV-2006231_44	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-2006231_44	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-2006231_44	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2006231_44	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2006231_45	phrog_7043	310.9	0	tail protein	tail
UniRef90	UHGV-2006231_45	UniRef90_UPI0018996BD4	540.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-2006231_45	1499683.CCFF01000005_gene80	460.0	0	Phage minor structural protein	N/A
Pfam	UHGV-2006231_45	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-2006231_45	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-2006231_45	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2006231_45	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2006231	Yes	29,175	30	77	1
UHGV-0072121	No	29,601	30	78	1
UHGV-0188167	No	26,608	30	70	1
UHGV-0087198	No	17,529	29	45	1