vOTU vOTU-020114

vOTU: vOTU-020114

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-020114
Number of genomes	5
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp000435555
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00200 → vGENUS-01425 → vOTU-020114
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1437673
Biosample ID	SAMN05414908
Genome length (bp)	20,008 bps
CheckV completeness	56.98% (Medium-quality)
CDS count	24
CDS density	95.29%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	46	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp000435555	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 56.98)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1437673_1	UniRef90_A0A3D1I232	80.9	5.39e-18	zinc_ribbon_2 domain-containing protein	N/A
structural_annotation	UHGV-1437673_1	TIGR04165,COG3478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1437673_2	1262449.CP6013_2082	145.0	7.88931e-43	N/A	N/A
structural_annotation	UHGV-1437673_2	PF11631,TIGR03066	N/A	N/A	N/A	N/A
KOfam	UHGV-1437673_3	K06400	306.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1437673_3	phrog_95	317.5	0	integrase	integration and excision
UniRef90	UHGV-1437673_3	UniRef90_A0A352ULE7	471.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1437673_3	1120746.CCNL01000010_gene1415	371.0	0	recombinase activity	N/A
Pfam	UHGV-1437673_3	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1437673_3	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-1437673_3	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1437673_3	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1437673_4	UniRef90_A0A6N3FXW7	140.0	1.27995e-41	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-1437673_4	742738.HMPREF9460_04059	73.6	0.00000000000000264	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1437673_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1437673_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1437673_4	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1437673_6	K01448	58.7	8.8e-17	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1437673_6	phrog_435	88.9	4.4e-26	endolysin	lysis
UniRef90	UHGV-1437673_6	UniRef90_A0A810PZ73	525.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-1437673_6	697281.Mahau_0053	125.0	3.79e-32	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-1437673_6	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-1437673_6	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-1437673_6	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-1437673_6	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1437673_6	PF01520,PF08230,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-1437673_7	phrog_881	86.9	1.1e-25	holin	lysis
UniRef90	UHGV-1437673_7	UniRef90_UPI00189D3A4F	75.1	2.09e-16	phage holin	N/A
eggNOG-mapper	UHGV-1437673_7	742740.HMPREF9474_02251	77.4	4.74e-18	Putative phage holin Dp-1	N/A
Pfam	UHGV-1437673_7	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1437673_7	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-1437673_8	phrog_1863	68.7	5.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-1437673_8	718252.FP2_04900	112.0	1.12e-31	N/A	N/A
PHROG	UHGV-1437673_9	phrog_1067	328.9	0	minor head protein	head and packaging
UniRef90	UHGV-1437673_9	UniRef90_A0A1C6H6B4	499.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1437673_9	1123263.AUKY01000068_gene489	365.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1437673_9	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1437673_9	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1437673_9	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1437673_9	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1437673_10	phrog_33	63.4	5.7e-18	distal tail protein Dit	tail
UniRef90	UHGV-1437673_10	UniRef90_A0A173Z1X4	157.0	2.66247e-44	Phage-related protein	N/A
eggNOG-mapper	UHGV-1437673_10	536233.CLO_0897	86.3	1.14e-17	tail component	N/A
COG	UHGV-1437673_10	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1437673_10	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1437673_11	phrog_6900	240.7	0	tail length tape measure protein	tail
UniRef90	UHGV-1437673_11	UniRef90_A0A7X8M4B4	256.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-1437673_11	573061.Clocel_3967	303.0	0	tape measure	N/A
COG	UHGV-1437673_11	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1437673_11	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1437673_14	phrog_88	83.9	1.9e-24	major tail protein	tail
UniRef90	UHGV-1437673_14	UniRef90_UPI0018771F27	117.0	1.26e-29	phage tail protein	N/A
eggNOG-mapper	UHGV-1437673_14	33035.JPJF01000039_gene278	71.2	0.00000000000152	N/A	N/A
NCBIFam	UHGV-1437673_14	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1437673_14	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1437673_15	phrog_5	48.4	0.00000000000021	tail completion or Neck1 protein	connector
UniRef90	UHGV-1437673_15	UniRef90_R6UNR2	141.0	4.68e-40	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1437673_15	908340.HMPREF9406_2573	141.0	7.84993e-41	N/A	N/A
structural_annotation	UHGV-1437673_15	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1437673_16	999413.HMPREF1094_02005	84.0	1.96e-19	N/A	N/A
structural_annotation	UHGV-1437673_16	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1437673_17	phrog_19734	112.4	2.5e-33	N/A	unknown function
UniRef90	UHGV-1437673_17	UniRef90_A0A6I7GNS7	127.0	8.39e-35	Phage head closure protein	N/A
eggNOG-mapper	UHGV-1437673_17	349161.Dred_2602	80.5	1.9e-17	N/A	N/A
PHROG	UHGV-1437673_18	phrog_749	62.6	5.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-1437673_18	349161.Dred_2603	86.3	1.06e-20	N/A	N/A
PHROG	UHGV-1437673_19	phrog_10	144.4	1.10002e-42	major head protein	head and packaging
UniRef90	UHGV-1437673_19	UniRef90_G9YSC0	634.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1437673_19	610130.Closa_0744	386.0	0	Phage capsid family	N/A
Pfam	UHGV-1437673_19	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1437673_19	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1437673_19	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1437673_19	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1437673_19	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1437673_20	K01358	141.3	8.59977e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1437673_20	phrog_94	260.5	0	head maturation protease	head and packaging
UniRef90	UHGV-1437673_20	UniRef90_A0A1Y4BT12	337.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1437673_20	349161.Dred_2605	314.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1437673_20	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1437673_20	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1437673_20	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1437673_21	phrog_12	123.1	6.8e-37	portal protein	head and packaging
UniRef90	UHGV-1437673_21	UniRef90_UPI0018755FA4	504.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1437673_21	610130.Closa_0742	300.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1437673_21	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1437673_21	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1437673_21	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1437673_21	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1437673_22	phrog_9	239.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-1437673_22	UniRef90_A0A6I7GGF0	921.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1437673_22	1235792.C808_00083	602.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1437673_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1437673_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1437673_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1437673_22	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1437673_23	phrog_5110	59.6	3.2e-17	terminase small subunit	head and packaging
UniRef90	UHGV-1437673_23	UniRef90_UPI00195E8788	117.0	2.43e-30	P27 family phage terminase small subunit	N/A
Pfam	UHGV-1437673_23	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1437673_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-1437673_24	K03497	54.0	1.2e-16	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1437673_24	phrog_21498	282.0	0	N/A	unknown function
UniRef90	UHGV-1437673_24	UniRef90_A0A7X2P836	293.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1437673_24	469378.Ccur_02830	271.0	0	DNA binding	N/A
PADLOC	UHGV-1437673_24	MTase_II_00015	79.1	6.8e-23	Type II methyltransferase	RM
Pfam	UHGV-1437673_24	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1437673_24	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1437673_24	PF02195,PF05869,MF_02015,TIGR00180,TIGR01712,COG1475	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1437673	Yes	20,008	58	57	1
UHGV-0197840	No	16,018	59	46	1
UHGV-1802900	No	14,774	59	42	1
UHGV-1617806	No	10,429	60	29	1
UHGV-1622918	No	10,429	60	29	1